Wall clock time and date at job start Wed Apr 1 2020 03:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86792 * 120.00154 * 2 1 4 4 H 1.48497 * 109.47207 * 275.59671 * 3 2 1 5 5 H 1.48496 * 109.47008 * 35.59681 * 3 2 1 6 6 H 1.48510 * 109.46990 * 155.59701 * 3 2 1 7 7 C 1.38818 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99521 * 39.90006 * 7 2 1 9 9 N 1.36926 * 119.99807 * 219.90245 * 7 2 1 10 10 C 1.46969 * 120.59474 * 201.30562 * 9 7 2 11 11 C 1.53367 * 108.63532 * 235.25034 * 10 9 7 12 12 N 1.46971 * 108.63346 * 310.56826 * 11 10 9 13 13 C 1.34770 * 120.59324 * 235.20398 * 12 11 10 14 14 O 1.21665 * 120.00495 * 5.13260 * 13 12 11 15 15 C 1.46919 * 119.99687 * 185.12444 * 13 12 11 16 16 C 1.36368 * 126.76439 * 40.63638 * 15 13 12 17 17 N 1.35474 * 109.76480 * 179.97438 * 16 15 13 18 18 H 0.97003 * 124.78480 * 179.97438 * 17 16 15 19 19 C 1.37953 * 110.43124 * 0.24037 * 17 16 15 20 20 C 1.39127 * 133.19404 * 180.41351 * 19 17 16 21 21 C 1.37762 * 119.93505 * 179.61100 * 20 19 17 22 22 N 1.48017 * 119.68370 * 179.71934 * 21 20 19 23 23 O 1.21803 * 119.99921 * 180.02562 * 22 21 20 24 24 O 1.21797 * 119.99840 * 0.02562 * 22 21 20 25 25 C 1.38755 * 120.63383 * 359.74364 * 21 20 19 26 26 C 1.37760 * 120.30207 * 0.02562 * 25 21 20 27 27 C 1.39278 * 119.66930 * 359.97438 * 26 25 21 28 28 C 1.46959 * 118.80632 * 55.48377 * 12 11 10 29 29 C 1.46963 * 120.60108 * 21.32475 * 9 7 2 30 30 H 0.97000 * 119.99594 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.61404 * 115.49961 * 10 9 7 32 32 H 1.09008 * 109.74598 * 355.07399 * 10 9 7 33 33 H 1.09000 * 109.60801 * 190.82983 * 11 10 9 34 34 H 1.08999 * 109.61596 * 70.31825 * 11 10 9 35 35 H 1.08001 * 125.11927 * 359.95671 * 16 15 13 36 36 H 1.08005 * 120.02727 * 359.33460 * 20 19 17 37 37 H 1.07993 * 119.85107 * 179.97438 * 25 21 20 38 38 H 1.07997 * 120.16487 * 179.97438 * 26 25 21 39 39 H 1.08996 * 109.61496 * 64.26617 * 28 12 11 40 40 H 1.09003 * 109.60516 * 184.77646 * 28 12 11 41 41 H 1.08999 * 109.61275 * 244.50346 * 29 9 7 42 42 H 1.09008 * 109.60679 * 5.00954 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3795 2.1146 -1.3934 5 1 1.5119 2.6155 0.8149 6 1 3.6020 1.4087 0.5785 7 6 2.0103 -1.2022 -0.0005 8 1 1.6588 -2.0283 -0.6009 9 7 3.1404 -1.3407 0.7601 10 6 4.1320 -2.3785 0.4446 11 6 4.3521 -3.2417 1.6930 12 7 4.5952 -2.3554 2.8399 13 6 5.7071 -2.4923 3.5890 14 8 6.5647 -3.2919 3.2644 15 6 5.8837 -1.6758 4.7975 16 6 4.9271 -1.3616 5.7173 17 7 5.4653 -0.5915 6.6933 18 1 4.9776 -0.2443 7.4565 19 6 6.8035 -0.3657 6.4456 20 6 7.7925 0.3376 7.1260 21 6 9.0748 0.3798 6.6242 22 7 10.1212 1.1348 7.3494 23 8 11.2567 1.1764 6.9107 24 8 9.8468 1.7146 8.3848 25 6 9.3947 -0.2782 5.4453 26 6 8.4306 -0.9839 4.7594 27 6 7.1301 -1.0349 5.2554 28 6 3.6010 -1.3212 3.1588 29 6 3.3835 -0.4544 1.9069 30 1 -0.4849 0.8401 -0.0004 31 1 5.0720 -1.9100 0.1533 32 1 3.7657 -3.0019 -0.3713 33 1 5.2155 -3.8897 1.5421 34 1 3.4654 -3.8474 1.8801 35 1 3.8956 -1.6787 5.6740 36 1 7.5541 0.8536 8.0443 37 1 10.4039 -0.2364 5.0631 38 1 8.6820 -1.4949 3.8418 39 1 2.6620 -1.7931 3.4479 40 1 3.9682 -0.7005 3.9761 41 1 4.2702 0.1512 1.7198 42 1 2.5201 0.1937 2.0579 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266653058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:26 Heat of formation + Delta-G solvation = 72.999613 kcal Electronic energy + Delta-G solvation = -29659.422368 eV Core-core repulsion = 25417.105040 eV Total energy + Delta-G solvation = -4242.317328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -42.52838 -41.95085 -39.58436 -37.67718 -37.06823 -36.75705 -34.09579 -32.91900 -31.80829 -31.00148 -30.52162 -29.96138 -27.35877 -26.35130 -24.26160 -23.74968 -23.34652 -22.58992 -22.22327 -20.49686 -19.69018 -19.07737 -18.76107 -17.91801 -17.72577 -17.04952 -16.91129 -16.17966 -15.72653 -15.51643 -15.19314 -14.92456 -14.65214 -14.53156 -14.36879 -14.26062 -13.75249 -13.52333 -13.07821 -12.73506 -12.59041 -12.42008 -12.25599 -12.06045 -11.96926 -11.75100 -11.39203 -11.33914 -11.18552 -10.93021 -10.53085 -10.49950 -10.48727 -10.31045 -9.79855 -9.56957 -9.16460 -8.87030 -8.48669 -8.29549 -7.20780 -6.20936 -3.33707 -0.45747 0.51101 1.09468 1.12308 1.62848 2.35340 2.82887 3.04806 3.25963 3.34370 3.40116 3.46686 3.95095 4.12935 4.23178 4.32839 4.41672 4.50656 4.63501 4.71635 4.83266 4.94580 5.11693 5.15606 5.39151 5.40645 5.47989 5.62375 5.67019 5.74783 5.79969 5.87683 5.94038 6.02136 6.05773 6.12245 6.28375 6.37486 6.46903 6.64068 6.68508 6.79650 7.44238 7.59910 7.73175 8.11272 8.28865 8.76216 9.56455 9.94629 10.92489 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.002848 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.317945 B = 9827.455549 C =10456.689354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.039 3.961 3 Si 0.826 3.174 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.259 1.259 7 C -0.276 4.276 8 H 0.086 0.914 9 N -0.599 5.599 10 C 0.133 3.867 11 C 0.097 3.903 12 N -0.592 5.592 13 C 0.584 3.416 14 O -0.548 6.548 15 C -0.215 4.215 16 C 0.129 3.871 17 N -0.571 5.571 18 H 0.428 0.572 19 C 0.082 3.918 20 C -0.048 4.048 21 C -0.030 4.030 22 N 0.034 4.966 23 O -0.158 6.158 24 O -0.170 6.170 25 C -0.089 4.089 26 C -0.055 4.055 27 C -0.022 4.022 28 C 0.078 3.922 29 C 0.134 3.866 30 H 0.263 0.737 31 H 0.027 0.973 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.194 0.806 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.805 -1.876 15.473 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.162 4.162 3 Si 0.653 3.347 4 H -0.220 1.220 5 H -0.220 1.220 6 H -0.184 1.184 7 C -0.403 4.403 8 H 0.104 0.896 9 N -0.322 5.322 10 C 0.006 3.994 11 C -0.026 4.026 12 N -0.324 5.324 13 C 0.372 3.628 14 O -0.427 6.427 15 C -0.225 4.225 16 C -0.003 4.003 17 N -0.173 5.173 18 H 0.267 0.733 19 C -0.025 4.025 20 C -0.069 4.069 21 C -0.114 4.114 22 N 0.552 4.448 23 O -0.375 6.375 24 O -0.384 6.384 25 C -0.109 4.109 26 C -0.074 4.074 27 C -0.027 4.027 28 C -0.047 4.047 29 C 0.007 3.993 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.211 0.789 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.467 -2.542 15.020 18.483 hybrid contribution 0.209 1.612 0.439 1.684 sum 10.676 -0.930 15.459 18.810 Atomic orbital electron populations 1.70179 1.06216 1.27009 1.47796 1.25071 0.94691 0.97352 0.99095 0.87768 0.82242 0.86488 0.78235 1.21979 1.22048 1.18380 1.18780 0.98443 0.97729 1.25350 0.89647 1.44316 1.22163 1.36402 1.29340 1.21322 0.92446 0.91138 0.94448 1.22254 1.01469 0.92698 0.86195 1.47910 1.20714 1.34236 1.29517 1.17151 0.81737 0.81985 0.81951 1.90768 1.42042 1.37939 1.71930 1.20143 0.92445 1.09751 1.00158 1.22480 0.98898 0.91576 0.87357 1.41519 1.07411 1.44416 1.23912 0.73344 1.17654 0.85140 1.02548 0.97159 1.19598 0.89003 0.98045 1.00291 1.20499 0.88135 1.05092 0.97656 1.43518 1.01867 0.99118 1.00252 1.94545 1.05779 1.66498 1.70637 1.94525 1.87299 1.44544 1.11988 1.20739 1.01811 0.96011 0.92332 1.20581 0.89744 0.96997 1.00107 1.19088 0.93548 0.96634 0.93454 1.22839 0.91460 0.90423 0.99964 1.21722 0.99579 0.92040 0.85970 0.92690 0.95487 0.90596 0.89434 0.91202 0.78898 0.82912 0.82718 0.82928 0.90663 0.90575 0.94981 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.63 13.97 55.49 0.78 -23.86 16 2 C 0.04 1.05 4.80 -17.43 -0.08 0.97 16 3 Si 0.83 19.75 26.33 -169.99 -4.47 15.28 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -5.91 5.03 56.52 0.28 -5.62 16 7 C -0.28 -7.07 9.87 -15.06 -0.15 -7.22 16 8 H 0.09 2.33 8.02 -52.49 -0.42 1.91 16 9 N -0.60 -12.94 2.79 -171.76 -0.48 -13.42 16 10 C 0.13 2.42 6.67 -3.60 -0.02 2.40 16 11 C 0.10 1.53 6.60 -3.60 -0.02 1.51 16 12 N -0.59 -8.98 2.94 -173.67 -0.51 -9.49 16 13 C 0.58 8.78 7.59 -12.75 -0.10 8.68 16 14 O -0.55 -9.76 16.52 5.22 0.09 -9.67 16 15 C -0.21 -2.56 5.40 -103.31 -0.56 -3.11 16 16 C 0.13 1.04 9.43 -16.62 -0.16 0.88 16 17 N -0.57 -3.65 5.99 -10.48 -0.06 -3.71 16 18 H 0.43 1.16 8.96 -40.82 -0.37 0.80 16 19 C 0.08 0.74 7.26 -83.97 -0.61 0.13 16 20 C -0.05 -0.43 9.57 -39.43 -0.38 -0.81 16 21 C -0.03 -0.32 6.85 -79.93 -0.55 -0.86 16 22 N 0.03 0.42 4.45 33.97 0.15 0.57 16 23 O -0.16 -2.07 18.42 -29.46 -0.54 -2.61 16 24 O -0.17 -2.16 18.41 -29.46 -0.54 -2.70 16 25 C -0.09 -0.90 9.53 -39.57 -0.38 -1.28 16 26 C -0.06 -0.61 10.09 -39.37 -0.40 -1.00 16 27 C -0.02 -0.25 6.36 -104.95 -0.67 -0.91 16 28 C 0.08 1.12 5.70 -3.37 -0.02 1.10 16 29 C 0.13 2.57 4.57 -3.37 -0.02 2.56 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.33 7.91 -51.92 -0.41 0.92 16 33 H 0.09 1.34 6.99 -51.93 -0.36 0.98 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.19 1.03 7.22 -52.49 -0.38 0.65 16 36 H 0.15 1.05 7.58 -52.48 -0.40 0.66 16 37 H 0.16 1.34 7.59 -52.49 -0.40 0.94 16 38 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.08 0.87 4.66 -51.93 -0.24 0.63 16 41 H 0.03 0.64 6.90 -51.93 -0.36 0.29 16 42 H 0.08 1.59 5.21 -51.92 -0.27 1.32 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -33.08 351.15 -8.96 -42.04 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.55 Total: -0.74 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -4.10 Total: 3.03 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.13 Total: -49.90 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -1.00 Total: -14.99 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.47 Total: 15.28 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.08 -8.96 -42.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266653058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.036 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds