Wall clock time and date at job start Wed Apr 1 2020 03:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34817 * 116.99753 * 2 1 4 4 O 1.21529 * 120.00167 * 359.97438 * 3 2 1 5 5 C 1.47144 * 119.99582 * 180.02562 * 3 2 1 6 6 C 1.36634 * 125.81079 * 180.02562 * 5 3 2 7 7 C 1.40044 * 106.91574 * 179.97438 * 6 5 3 8 8 C 1.36571 * 106.93491 * 359.97438 * 7 6 5 9 9 C 1.47325 * 125.79848 * 179.97438 * 8 7 6 10 10 O 1.21608 * 120.00074 * 354.56628 * 9 8 7 11 11 N 1.34776 * 120.00395 * 174.56106 * 9 8 7 12 12 C 1.46504 * 120.00420 * 184.83073 * 11 9 8 13 13 C 1.50699 * 109.46967 * 275.04283 * 12 11 9 14 14 H 1.07996 * 120.00178 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99750 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00371 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99905 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47019 * 59.99563 * 17 15 13 19 19 H 1.48500 * 109.46764 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46967 * 299.99529 * 17 15 13 21 21 C 1.46504 * 119.99859 * 4.83286 * 11 9 8 22 22 C 1.50696 * 109.47209 * 84.48952 * 21 11 9 23 23 C 1.38225 * 119.61808 * 95.02174 * 22 21 11 24 24 C 1.38628 * 119.15960 * 179.74492 * 23 22 21 25 25 C 1.38681 * 118.42131 * 0.47694 * 24 23 22 26 26 C 1.38176 * 119.15976 * 359.50325 * 25 24 23 27 27 N 1.31853 * 119.61741 * 275.00070 * 22 21 11 28 28 O 1.34531 * 108.40512 * 0.26543 * 8 7 6 29 29 H 1.09000 * 109.46886 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47530 * 300.00511 * 1 2 3 31 31 H 1.09003 * 109.47008 * 60.00810 * 1 2 3 32 32 H 1.07996 * 126.54608 * 359.97196 * 6 5 3 33 33 H 1.07999 * 126.53333 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.46874 * 35.03941 * 12 11 9 35 35 H 1.09001 * 109.47358 * 155.03886 * 12 11 9 36 36 H 0.97001 * 120.00286 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.46477 * 324.49027 * 21 11 9 38 38 H 1.09004 * 109.47106 * 204.49220 * 21 11 9 39 39 H 1.08000 * 120.42160 * 359.95671 * 23 22 21 40 40 H 1.08003 * 120.79299 * 180.23279 * 24 23 22 41 41 H 1.07993 * 120.41614 * 179.78290 * 25 24 23 42 42 H 1.07996 * 119.61772 * 180.25352 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2013 0.0000 4 8 1.4021 2.2205 -0.0005 5 6 3.5335 1.2782 -0.0006 6 6 4.2739 2.4266 -0.0001 7 6 5.6208 2.0430 -0.0004 8 6 5.6455 0.6775 -0.0003 9 6 6.8558 -0.1625 -0.0010 10 8 7.9531 0.3522 -0.1015 11 7 6.7471 -1.5013 0.1097 12 6 7.9521 -2.3279 0.2155 13 6 8.4777 -2.6286 -1.1644 14 1 7.9652 -2.2431 -2.0334 15 6 9.6122 -3.3970 -1.3176 16 7 10.2360 -3.8669 -0.2595 17 14 10.2634 -3.7705 -3.0282 18 1 10.5949 -2.4991 -3.7201 19 1 11.4848 -4.6082 -2.9208 20 1 9.2283 -4.5006 -3.8033 21 6 5.4240 -2.1300 0.1242 22 6 4.9534 -2.3428 -1.2915 23 6 5.1646 -3.5631 -1.9055 24 6 4.7231 -3.7502 -3.2062 25 6 4.0916 -2.6949 -3.8472 26 6 3.9155 -1.5038 -3.1692 27 7 4.3446 -1.3630 -1.9301 28 8 4.3769 0.2297 -0.0060 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 3.8932 3.4372 0.0003 33 1 6.4768 2.7015 0.0003 34 1 8.7115 -1.7918 0.7847 35 1 7.7090 -3.2613 0.7232 36 1 11.0344 -4.4072 -0.3673 37 1 4.7201 -1.4831 0.6477 38 1 5.4838 -3.0909 0.6355 39 1 5.6642 -4.3618 -1.3774 40 1 4.8709 -4.6941 -3.7099 41 1 3.7380 -2.8042 -4.8617 42 1 3.4210 -0.6785 -3.6599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269292521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:46 Heat of formation + Delta-G solvation = -41.017846 kcal Electronic energy + Delta-G solvation = -30837.598730 eV Core-core repulsion = 26558.044483 eV Total energy + Delta-G solvation = -4279.554247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.63000 -40.30339 -39.90139 -38.69318 -36.66201 -35.43423 -33.02413 -32.79006 -32.07623 -31.18639 -30.58087 -28.23907 -27.52739 -26.20233 -24.50802 -23.23771 -22.87121 -21.94714 -21.53601 -20.77018 -19.50801 -18.29106 -17.26270 -17.03017 -16.91019 -16.61401 -16.28424 -16.06071 -15.70928 -15.27213 -15.14972 -14.55530 -14.21426 -14.00813 -13.69359 -13.39621 -13.30585 -13.18011 -13.09590 -12.90866 -12.71323 -12.63505 -12.35889 -12.22565 -11.65896 -11.46259 -11.28089 -11.02380 -11.00526 -10.98233 -10.65701 -10.27652 -9.95733 -9.78816 -9.54612 -9.47451 -9.12100 -8.70799 -8.66523 -8.48482 -7.89390 -6.10833 -4.14345 0.70316 1.39336 1.62978 1.98776 2.21724 2.86763 2.93618 3.27275 3.32618 3.36468 3.59385 3.73191 4.20769 4.39368 4.60959 4.66548 4.88469 4.89974 4.95933 4.97236 5.05024 5.09179 5.24397 5.29777 5.34896 5.42401 5.56044 5.58789 5.67536 5.81485 5.87195 6.04532 6.06571 6.12420 6.30857 6.42851 6.50812 6.70938 6.95401 7.00596 7.24651 7.34744 7.53874 7.85137 8.06242 8.15183 8.33688 8.65979 8.90249 9.50252 10.97444 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.004191 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.336953 B = 6680.170483 C = 7894.904277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.340 6.340 3 C 0.558 3.442 4 O -0.495 6.495 5 C -0.055 4.055 6 C -0.119 4.119 7 C -0.165 4.165 8 C 0.005 3.995 9 C 0.588 3.412 10 O -0.503 6.503 11 N -0.578 5.578 12 C 0.247 3.753 13 C -0.519 4.519 14 H 0.056 0.944 15 C 0.065 3.935 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.154 3.846 22 C 0.120 3.880 23 C -0.131 4.131 24 C -0.081 4.081 25 C -0.177 4.177 26 C 0.090 3.910 27 N -0.462 5.462 28 O -0.099 6.099 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.264 0.736 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.529 3.433 -0.549 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.256 6.256 3 C 0.403 3.597 4 O -0.385 6.385 5 C -0.107 4.107 6 C -0.139 4.139 7 C -0.185 4.185 8 C -0.051 4.051 9 C 0.372 3.628 10 O -0.379 6.379 11 N -0.309 5.309 12 C 0.128 3.872 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.137 4.137 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.203 1.203 21 C 0.030 3.970 22 C -0.019 4.019 23 C -0.151 4.151 24 C -0.107 4.107 25 C -0.197 4.197 26 C -0.067 4.067 27 N -0.172 5.172 28 O 0.008 5.992 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.181 0.819 33 H 0.183 0.817 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.201 4.299 -0.086 18.702 hybrid contribution 0.384 -0.921 -1.762 2.025 sum -17.817 3.379 -1.848 18.229 Atomic orbital electron populations 1.23325 0.75812 1.03960 1.02593 1.86708 1.23486 1.31658 1.83732 1.19367 0.85621 0.81952 0.72751 1.90899 1.64566 1.36073 1.46946 1.20855 0.88020 0.87105 1.14714 1.21824 0.92132 0.98645 1.01253 1.21843 0.97570 0.93706 1.05408 1.23093 0.83076 0.94432 1.04504 1.16800 0.85235 0.82082 0.78649 1.90866 1.24750 1.72694 1.49628 1.48244 1.08131 1.05332 1.69176 1.19480 0.80333 0.89319 0.98019 1.21277 1.10635 1.31747 0.92130 0.92569 1.24861 0.96222 0.95747 0.96883 1.69902 1.19450 1.35300 1.28680 0.86620 0.78301 0.78371 0.84550 1.20204 1.21146 1.20292 1.20609 0.84878 1.00249 0.91253 1.21502 0.93710 0.89452 0.97202 1.22000 0.98409 0.98999 0.95723 1.21521 0.95596 0.98983 0.94639 1.22028 1.01742 0.94997 1.00955 1.22557 0.97114 0.96319 0.90745 1.67480 1.08969 1.31747 1.08959 1.84590 1.14537 1.32429 1.67607 0.87851 0.91713 0.91727 0.81939 0.81676 0.93632 0.94171 0.92603 0.88558 0.88271 0.84405 0.85312 0.85598 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.37 16 2 O -0.34 -4.25 10.58 -42.24 -0.45 -4.69 16 3 C 0.56 7.72 7.95 34.35 0.27 8.00 16 4 O -0.50 -7.31 16.65 -19.29 -0.32 -7.63 16 5 C -0.05 -0.80 7.19 -36.55 -0.26 -1.06 16 6 C -0.12 -1.61 10.60 -39.48 -0.42 -2.03 16 7 C -0.16 -2.52 10.60 -39.51 -0.42 -2.94 16 8 C 0.01 0.09 6.58 -36.49 -0.24 -0.15 16 9 C 0.59 12.54 7.56 -12.56 -0.10 12.44 16 10 O -0.50 -12.50 16.58 5.27 0.09 -12.41 16 11 N -0.58 -12.00 2.47 -177.74 -0.44 -12.44 16 12 C 0.25 6.02 5.12 -5.19 -0.03 6.00 16 13 C -0.52 -13.97 9.35 -34.44 -0.32 -14.29 16 14 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 17 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.15 2.59 5.44 -5.19 -0.03 2.56 16 22 C 0.12 2.05 6.31 -82.59 -0.52 1.53 16 23 C -0.13 -2.11 9.72 -39.44 -0.38 -2.49 16 24 C -0.08 -1.15 10.18 -39.27 -0.40 -1.55 16 25 C -0.18 -2.33 10.11 -39.44 -0.40 -2.73 16 26 C 0.09 1.30 11.18 -17.55 -0.20 1.11 16 27 N -0.46 -7.72 7.74 -9.48 -0.07 -7.79 16 28 O -0.10 -1.59 4.99 4.13 0.02 -1.57 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.17 2.32 8.06 -52.49 -0.42 1.90 16 34 H 0.05 1.25 7.65 -51.93 -0.40 0.85 16 35 H 0.04 0.96 7.79 -51.93 -0.40 0.56 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.10 1.51 5.24 -51.93 -0.27 1.24 16 38 H 0.10 1.46 7.69 -51.93 -0.40 1.06 16 39 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -33.00 374.32 -7.11 -40.11 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.82 Total: 1.54 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -2.47 Total: 7.44 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.22 Total: -44.84 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.66 Total: -26.30 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.00 -7.11 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269292521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.912 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds