Wall clock time and date at job start Wed Apr 1 2020 02:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34845 * 119.87236 * 2 1 4 4 O 1.21779 * 120.30200 * 359.97438 * 3 2 1 5 5 C 1.41574 * 119.38543 * 180.30044 * 3 2 1 6 6 C 1.35020 * 119.11450 * 359.41534 * 5 3 2 7 7 N 1.36828 * 119.68665 * 0.27830 * 6 5 3 8 8 C 1.46501 * 119.69360 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47102 * 90.00016 * 8 7 6 10 10 O 1.20831 * 119.99951 * 0.02562 * 9 8 7 11 11 O 1.34229 * 119.99941 * 180.02562 * 9 8 7 12 12 C 1.45201 * 117.00136 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.47453 * 180.02562 * 12 11 9 14 14 C 1.38640 * 119.74734 * 269.72812 * 13 12 11 15 15 C 1.37618 * 120.24770 * 179.71772 * 14 13 12 16 16 C 1.40717 * 119.74380 * 0.57321 * 15 14 13 17 17 C 1.41390 * 120.24213 * 179.67897 * 16 15 14 18 18 H 1.08002 * 119.99855 * 204.39886 * 17 16 15 19 19 C 1.39941 * 120.00274 * 24.40549 * 17 16 15 20 20 N 1.30832 * 120.00119 * 17.85364 * 19 17 16 21 21 Si 1.86803 * 120.00300 * 197.85466 * 19 17 16 22 22 H 1.48506 * 109.46681 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47015 * 119.99426 * 21 19 17 24 24 H 1.48493 * 109.47240 * 240.00046 * 21 19 17 25 25 C 1.40716 * 119.51078 * 359.70038 * 16 15 14 26 26 C 1.37624 * 119.74734 * 0.02562 * 25 16 15 27 27 C 1.34550 * 120.62015 * 359.97438 * 7 6 5 28 28 O 1.21586 * 119.53469 * 179.97438 * 27 7 6 29 29 H 1.09002 * 109.47150 * 270.31123 * 1 2 3 30 30 H 1.08998 * 109.47073 * 30.30681 * 1 2 3 31 31 H 1.08998 * 109.47578 * 150.31381 * 1 2 3 32 32 H 1.08003 * 120.43974 * 179.69628 * 5 3 2 33 33 H 1.07994 * 120.15476 * 180.30231 * 6 5 3 34 34 H 1.08991 * 109.47349 * 210.00084 * 8 7 6 35 35 H 1.08995 * 109.46724 * 330.00032 * 8 7 6 36 36 H 1.09003 * 109.47002 * 300.00545 * 12 11 9 37 37 H 1.09003 * 109.47214 * 59.99740 * 12 11 9 38 38 H 1.08000 * 119.87408 * 359.97438 * 14 13 12 39 39 H 1.07993 * 120.12651 * 180.27965 * 15 14 13 40 40 H 0.96991 * 119.99737 * 180.02562 * 20 19 17 41 41 H 1.07999 * 120.13002 * 179.97438 * 25 16 15 42 42 H 1.07992 * 119.87535 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1365 1.1693 0.0000 4 8 1.5309 2.2258 -0.0005 5 6 3.5522 1.1573 -0.0065 6 6 4.1992 -0.0278 -0.0005 7 7 3.4805 -1.1922 0.0059 8 6 4.1823 -2.4781 0.0130 9 6 4.4229 -2.9112 1.4362 10 8 4.0463 -2.2172 2.3508 11 8 5.0555 -4.0681 1.6879 12 6 5.2532 -4.4215 3.0822 13 6 5.9752 -5.7415 3.1684 14 6 5.2484 -6.9212 3.2168 15 6 5.8972 -8.1326 3.2898 16 6 7.3034 -8.1703 3.3273 17 6 7.9806 -9.4088 3.4091 18 1 8.9769 -9.4531 3.8237 19 6 7.3601 -10.5771 2.9528 20 7 6.3314 -10.5000 2.1481 21 14 8.0006 -12.2469 3.4924 22 1 9.1640 -12.0621 4.3967 23 1 6.9274 -12.9801 4.2109 24 1 8.4191 -13.0257 2.2994 25 6 8.0305 -6.9664 3.2834 26 6 7.3608 -5.7667 3.2048 27 6 2.1352 -1.1672 0.0068 28 8 1.5163 -2.2137 0.0121 29 1 -0.3633 0.0056 1.0277 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3634 -0.8927 -0.5089 32 1 4.1073 2.0838 -0.0115 33 1 5.2787 -0.0566 -0.0003 34 1 3.5752 -3.2262 -0.4967 35 1 5.1375 -2.3735 -0.5014 36 1 5.8476 -3.6501 3.5719 37 1 4.2855 -4.5033 3.5771 38 1 4.1692 -6.8895 3.1930 39 1 5.3293 -9.0506 3.3228 40 1 5.9011 -11.3098 1.8322 41 1 9.1100 -6.9836 3.3121 42 1 7.9167 -4.8414 3.1714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271908218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:28 Heat of formation + Delta-G solvation = -91.796877 kcal Electronic energy + Delta-G solvation = -28486.306925 eV Core-core repulsion = 24204.550735 eV Total energy + Delta-G solvation = -4281.756191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.70175 -40.41216 -39.22177 -37.89664 -37.51555 -36.21244 -35.49428 -33.95224 -32.51860 -30.94250 -29.45815 -29.08893 -28.13020 -27.03162 -24.30090 -24.11304 -23.61500 -21.35381 -21.15438 -20.14575 -19.61250 -18.24438 -18.10846 -17.46333 -17.38599 -17.06704 -16.43989 -16.33913 -15.73542 -15.44321 -15.40860 -14.66862 -14.26244 -14.22639 -14.08568 -13.91930 -13.77637 -13.56654 -12.99034 -12.90968 -12.62748 -12.51614 -12.25365 -12.14626 -12.09340 -11.81057 -11.24728 -11.23083 -11.05853 -10.96401 -10.60593 -10.58124 -10.48490 -10.31325 -10.08688 -9.78634 -9.54651 -9.29431 -9.01835 -7.64025 -7.53200 -6.93359 -4.53345 0.62060 1.36819 1.67075 2.10488 2.30369 2.60789 2.84733 2.93918 2.99101 3.03925 3.09848 3.30877 3.80664 3.97085 4.15973 4.40123 4.46455 4.72845 4.82672 4.86491 5.04111 5.07047 5.13721 5.26264 5.40380 5.50982 5.54844 5.58215 5.64318 5.95462 5.99442 6.15852 6.24257 6.61587 6.80470 6.82299 6.90964 7.10737 7.16017 7.19104 7.44398 7.55429 7.64922 7.76761 7.89226 7.93175 8.12073 8.47232 8.71686 8.79510 10.00205 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.029166 B = 0.001869 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.787725 B =14980.947820 C =15470.649738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.555 5.555 3 C 0.549 3.451 4 O -0.519 6.519 5 C -0.295 4.295 6 C 0.183 3.817 7 N -0.522 5.522 8 C 0.116 3.884 9 C 0.441 3.559 10 O -0.509 6.509 11 O -0.343 6.343 12 C 0.138 3.862 13 C -0.240 4.240 14 C -0.074 4.074 15 C -0.171 4.171 16 C 0.119 3.881 17 C -0.454 4.454 18 H 0.081 0.919 19 C 0.074 3.926 20 N -0.783 5.783 21 Si 0.910 3.090 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.273 1.273 25 C -0.231 4.231 26 C -0.062 4.062 27 C 0.699 3.301 28 O -0.531 6.531 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.283 0.717 41 H 0.095 0.905 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 15.604 -7.004 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.299 5.299 3 C 0.345 3.655 4 O -0.394 6.394 5 C -0.322 4.322 6 C 0.060 3.940 7 N -0.242 5.242 8 C -0.007 4.007 9 C 0.282 3.718 10 O -0.398 6.398 11 O -0.259 6.259 12 C 0.067 3.933 13 C -0.241 4.241 14 C -0.093 4.093 15 C -0.190 4.190 16 C 0.116 3.884 17 C -0.482 4.482 18 H 0.099 0.901 19 C -0.145 4.145 20 N -0.407 5.407 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.250 4.250 26 C -0.081 4.081 27 C 0.402 3.598 28 O -0.403 6.403 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.191 0.809 33 H 0.198 0.802 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.026 15.492 -6.828 17.661 hybrid contribution 0.302 -0.746 0.361 0.882 sum -4.723 14.747 -6.467 16.781 Atomic orbital electron populations 1.21918 0.75204 1.04936 1.04097 1.46327 1.10492 1.06199 1.66930 1.17390 0.88994 0.82863 0.76217 1.90875 1.70807 1.29268 1.48484 1.21902 0.92969 0.99072 1.18228 1.22383 0.99071 0.84068 0.88520 1.44382 1.05210 1.07606 1.67006 1.21347 1.00917 0.84752 0.93727 1.23646 0.75552 0.80639 0.91985 1.90689 1.47959 1.54444 1.46754 1.86720 1.68428 1.36390 1.34322 1.21808 0.99448 0.95471 0.76595 1.18636 0.93272 0.91492 1.20727 1.20553 0.97239 0.92599 0.98883 1.21304 0.94729 0.96175 1.06786 1.17703 0.92007 0.92276 0.86435 1.19727 1.02173 0.91217 1.35101 0.90056 1.25994 0.94096 1.01835 0.92587 1.69830 1.17791 1.31454 1.21612 0.86224 0.80044 0.80752 0.79562 1.18252 1.19543 1.19830 1.20965 0.97781 0.92461 1.13821 1.20377 0.92920 0.96449 0.98332 1.15794 0.81275 0.84508 0.78255 1.91050 1.65668 1.30118 1.53490 0.90781 0.88829 0.88946 0.80911 0.80249 0.83733 0.83968 0.91914 0.91885 0.89276 0.86198 0.90584 0.88664 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.12 59.84 0.61 1.35 16 2 N -0.56 -6.32 2.96 -131.50 -0.39 -6.71 16 3 C 0.55 6.26 7.44 -14.96 -0.11 6.15 16 4 O -0.52 -7.26 16.70 5.12 0.09 -7.17 16 5 C -0.30 -2.34 10.00 -39.45 -0.39 -2.73 16 6 C 0.18 1.20 10.38 -16.47 -0.17 1.03 16 7 N -0.52 -4.94 2.10 -122.83 -0.26 -5.20 16 8 C 0.12 1.01 5.93 -5.19 -0.03 0.98 16 9 C 0.44 6.05 8.02 36.01 0.29 6.34 16 10 O -0.51 -8.41 16.18 -18.75 -0.30 -8.71 16 11 O -0.34 -5.59 10.20 -39.25 -0.40 -5.99 16 12 C 0.14 2.46 5.58 36.00 0.20 2.66 16 13 C -0.24 -5.02 5.54 -104.33 -0.58 -5.60 16 14 C -0.07 -1.67 9.67 -39.66 -0.38 -2.05 16 15 C -0.17 -4.25 8.70 -38.87 -0.34 -4.59 16 16 C 0.12 3.01 5.57 -106.83 -0.60 2.41 16 17 C -0.45 -11.41 9.05 -37.75 -0.34 -11.75 16 18 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 19 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 20 N -0.78 -19.26 10.95 55.55 0.61 -18.65 16 21 Si 0.91 17.66 29.60 -169.99 -5.03 12.63 16 22 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 C -0.23 -5.35 9.80 -38.87 -0.38 -5.73 16 26 C -0.06 -1.31 9.67 -39.66 -0.38 -1.70 16 27 C 0.70 8.52 8.11 -87.28 -0.71 7.81 16 28 O -0.53 -7.86 15.35 5.29 0.08 -7.78 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.78 7.43 -51.93 -0.39 0.40 16 31 H 0.09 0.81 7.39 -51.93 -0.38 0.42 16 32 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 34 H 0.14 1.26 7.37 -51.93 -0.38 0.88 16 35 H 0.14 0.59 8.03 -51.93 -0.42 0.17 16 36 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 37 H 0.06 1.11 8.07 -51.93 -0.42 0.70 16 38 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.12 3.08 6.15 -52.49 -0.32 2.76 16 40 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 41 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 42 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -33.21 371.26 -8.24 -41.45 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -4.82 Total: 4.29 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -3.41 Total: -3.75 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: -0.04 Total: -30.56 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.54 Total: -29.66 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.21 -8.24 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271908218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.346 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds