Wall clock time and date at job start Wed Apr 1 2020 02:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34887 * 117.00174 * 180.02562 * 3 2 1 5 5 O 1.21621 * 120.00133 * 359.97438 * 4 3 2 6 6 C 1.46491 * 120.00165 * 179.97438 * 4 3 2 7 7 C 1.37993 * 126.26370 * 179.68698 * 6 4 3 8 8 C 1.39806 * 106.97020 * 179.90856 * 7 6 4 9 9 S 1.76194 * 126.08085 * 180.17046 * 8 7 6 10 10 O 1.42103 * 106.40230 * 23.76548 * 9 8 7 11 11 O 1.42096 * 106.40178 * 156.67904 * 9 8 7 12 12 N 1.65600 * 107.22187 * 270.22243 * 9 8 7 13 13 C 1.46494 * 120.00126 * 89.99635 * 12 9 8 14 14 C 1.46497 * 119.99694 * 270.00339 * 12 9 8 15 15 H 1.08997 * 109.47513 * 359.97438 * 14 12 9 16 16 C 1.52999 * 109.47322 * 119.99958 * 14 12 9 17 17 C 1.50705 * 109.46921 * 239.99678 * 14 12 9 18 18 H 1.08001 * 119.99949 * 359.97438 * 17 14 12 19 19 C 1.37871 * 119.99980 * 179.97438 * 17 14 12 20 20 N 1.31512 * 120.00232 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99793 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47282 * 90.00473 * 21 19 17 23 23 H 1.48506 * 109.47112 * 210.00132 * 21 19 17 24 24 H 1.48496 * 109.47118 * 330.00153 * 21 19 17 25 25 C 1.35488 * 107.83747 * 0.36313 * 8 7 6 26 26 N 1.34957 * 108.99076 * 359.77122 * 25 8 7 27 27 C 1.46493 * 125.63796 * 179.97438 * 26 25 8 28 28 H 1.09000 * 109.47050 * 299.99913 * 1 2 3 29 29 H 1.09001 * 109.46801 * 60.00026 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 120.00258 * 2 1 3 32 32 H 1.09000 * 109.47050 * 240.00087 * 2 1 3 33 33 H 1.08003 * 126.51550 * 0.03568 * 7 6 4 34 34 H 1.09009 * 109.46792 * 89.99882 * 13 12 9 35 35 H 1.08998 * 109.47604 * 210.00397 * 13 12 9 36 36 H 1.09000 * 109.47152 * 330.00422 * 13 12 9 37 37 H 1.08997 * 109.47151 * 59.99380 * 16 14 12 38 38 H 1.09004 * 109.47203 * 179.97438 * 16 14 12 39 39 H 1.08999 * 109.46816 * 299.99927 * 16 14 12 40 40 H 0.97002 * 120.00169 * 179.97438 * 20 19 17 41 41 H 1.08001 * 125.50280 * 179.80266 * 25 8 7 42 42 H 1.08997 * 109.47500 * 270.04150 * 27 26 25 43 43 H 1.08997 * 109.47447 * 30.04720 * 27 26 25 44 44 H 1.09004 * 109.47012 * 150.04627 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5458 -0.0005 5 8 4.0922 0.5813 -0.0005 6 6 3.9112 2.8995 -0.0011 7 6 5.2513 3.2285 0.0044 8 6 5.3288 4.6244 -0.0007 9 16 6.8081 5.5815 -0.0012 10 8 7.8238 4.7500 -0.5454 11 8 6.4661 6.8484 -0.5464 12 7 7.2197 5.8487 1.5804 13 6 8.0909 4.9017 2.2805 14 6 6.7125 7.0320 2.2794 15 1 6.0867 7.6135 1.6024 16 6 5.8853 6.5940 3.4897 17 6 7.8713 7.8771 2.7422 18 1 8.8842 7.5638 2.5366 19 6 7.6383 9.0502 3.4281 20 7 6.4049 9.4315 3.6789 21 14 9.0747 10.0974 4.0025 22 1 9.4273 11.0773 2.9439 23 1 8.6944 10.8225 5.2414 24 1 10.2441 9.2248 4.2787 25 6 4.0640 5.1103 -0.0009 26 7 3.1964 4.0765 -0.0012 27 6 1.7357 4.1881 -0.0009 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 6.0824 2.5387 0.0094 34 1 9.1312 5.1999 2.1496 35 1 7.8448 4.8981 3.3423 36 1 7.9451 3.9023 1.8705 37 1 6.5114 6.0126 4.1665 38 1 5.5083 7.4745 4.0100 39 1 5.0473 5.9827 3.1549 40 1 6.2410 10.2566 4.1618 41 1 3.7938 6.1559 -0.0013 42 1 1.3736 4.2160 1.0268 43 1 1.4411 5.1029 -0.5150 44 1 1.3056 3.3281 -0.5143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273605702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:59 Heat of formation + Delta-G solvation = -105.299264 kcal Electronic energy + Delta-G solvation = -28890.706927 eV Core-core repulsion = 24743.809180 eV Total energy + Delta-G solvation = -4146.897747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70340 -40.12539 -36.86058 -36.51997 -36.09587 -35.09596 -33.27924 -32.54009 -32.14979 -29.83473 -29.04287 -26.97535 -25.52040 -25.10994 -24.63307 -22.69630 -21.58698 -20.57586 -20.22116 -18.86389 -17.69246 -17.24423 -16.97653 -16.72017 -16.30811 -15.74550 -15.56529 -15.36123 -15.08648 -14.46511 -14.31253 -14.11796 -13.71666 -13.46716 -13.15654 -13.05922 -12.83895 -12.82458 -12.67746 -12.52524 -12.28369 -11.92385 -11.91267 -11.63550 -11.38250 -11.29905 -11.15349 -11.01388 -10.92942 -10.90943 -10.78048 -10.70502 -10.39460 -10.23410 -9.96126 -9.29595 -9.20577 -8.64629 -8.42799 -7.89544 -6.05322 -4.10910 1.03142 1.14565 2.02853 2.23196 2.57885 2.86681 3.31693 3.37982 3.41533 3.89191 4.34365 4.41388 4.47435 4.52377 4.52521 4.57368 4.73030 4.86060 4.92505 5.01829 5.15445 5.23947 5.26691 5.34445 5.39040 5.48844 5.56822 5.71575 5.82090 6.05591 6.24944 6.34293 6.45051 6.56648 6.69071 6.80347 6.84108 6.86422 7.04570 7.49397 7.49567 7.67258 7.81882 8.06417 8.30613 8.91674 9.54724 11.00487 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.019304 B = 0.002981 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.107603 B = 9391.076092 C = 9859.763212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.363 6.363 4 C 0.543 3.457 5 O -0.499 6.499 6 C -0.066 4.066 7 C -0.001 4.001 8 C -0.754 4.754 9 S 2.710 3.290 10 O -0.975 6.975 11 O -0.958 6.958 12 N -0.981 5.981 13 C 0.109 3.891 14 C 0.267 3.733 15 H 0.061 0.939 16 C -0.149 4.149 17 C -0.516 4.516 18 H 0.064 0.936 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.160 3.840 26 N -0.413 5.413 27 C 0.060 3.940 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.165 0.835 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.034 0.966 38 H 0.093 0.907 39 H 0.009 0.991 40 H 0.262 0.738 41 H 0.193 0.807 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.932 -14.640 -5.409 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.389 3.611 5 O -0.386 6.386 6 C -0.173 4.173 7 C -0.026 4.026 8 C -0.844 4.844 9 S 2.797 3.203 10 O -0.965 6.965 11 O -0.948 6.948 12 N -0.822 5.822 13 C -0.038 4.038 14 C 0.165 3.835 15 H 0.078 0.922 16 C -0.209 4.209 17 C -0.556 4.556 18 H 0.082 0.918 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.199 1.199 25 C 0.016 3.984 26 N -0.085 5.085 27 C -0.081 4.081 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.182 0.818 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.111 0.889 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.210 0.790 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.849 -14.641 -6.048 21.041 hybrid contribution 0.020 0.084 0.799 0.803 sum -13.829 -14.557 -5.249 20.753 Atomic orbital electron populations 1.21820 0.92453 1.03176 1.03492 1.23062 0.95313 0.79820 1.02933 1.86580 1.23873 1.32741 1.84873 1.19630 0.80479 0.87865 0.73137 1.90913 1.60266 1.40825 1.46626 1.19434 0.91444 0.83224 1.23212 1.20977 0.93893 0.93174 0.94585 1.31718 1.18454 1.07172 1.27025 1.01393 0.72921 0.72809 0.73142 1.93502 1.55254 1.70252 1.77458 1.93554 1.84830 1.39540 1.76919 1.57412 1.60320 1.33557 1.30869 1.21176 0.94081 0.90034 0.98461 1.18751 0.94177 0.79913 0.90700 0.92161 1.22132 0.97321 1.01213 1.00205 1.21350 0.93043 1.05527 1.35675 0.91815 1.24892 0.95879 0.97330 0.95778 1.69851 1.18740 1.23344 1.41204 0.86504 0.82474 0.80398 0.78076 1.20551 1.21279 1.19858 1.21891 0.87400 0.93731 0.95404 1.44221 1.07366 1.05336 1.51618 1.22425 0.75714 1.05295 1.04651 0.91398 0.91495 0.90059 0.90959 0.91019 0.81785 0.93074 0.91025 0.93016 0.94693 0.88899 0.97188 0.92782 0.79002 0.89740 0.88878 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.37 16 2 C 0.06 0.49 6.20 37.16 0.23 0.72 16 3 O -0.36 -3.78 7.65 -41.00 -0.31 -4.09 16 4 C 0.54 7.33 7.92 34.06 0.27 7.60 16 5 O -0.50 -7.82 16.68 -19.36 -0.32 -8.14 16 6 C -0.07 -0.93 6.89 -81.99 -0.56 -1.50 16 7 C 0.00 -0.01 10.46 -39.09 -0.41 -0.42 16 8 C -0.75 -12.40 6.17 -39.98 -0.25 -12.64 16 9 S 2.71 53.40 5.78 -107.50 -0.62 52.77 16 10 O -0.97 -20.44 16.95 -57.17 -0.97 -21.41 16 11 O -0.96 -21.42 16.41 -57.17 -0.94 -22.36 16 12 N -0.98 -20.29 3.06 -115.86 -0.35 -20.65 16 13 C 0.11 1.97 9.53 59.84 0.57 2.54 16 14 C 0.27 6.37 2.62 -69.08 -0.18 6.19 16 15 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 16 C -0.15 -3.31 8.95 37.16 0.33 -2.98 16 17 C -0.52 -13.68 8.37 -34.44 -0.29 -13.97 16 18 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 20 N -0.89 -24.29 11.32 55.43 0.63 -23.67 16 21 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.16 2.25 11.09 -17.16 -0.19 2.06 16 26 N -0.41 -5.09 3.15 -120.41 -0.38 -5.47 16 27 C 0.06 0.47 10.56 59.84 0.63 1.10 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.16 2.44 8.06 -52.48 -0.42 2.01 16 34 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 36 H 0.05 0.80 7.79 -51.93 -0.40 0.39 16 37 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 38 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.19 2.31 8.06 -52.49 -0.42 1.88 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.72 6.15 -51.93 -0.32 0.40 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -33.96 381.56 -8.36 -42.32 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.26 Total: -0.89 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 0.44 Total: -10.08 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.11 Total: -49.78 kcal Atomic # 8 Polarization: -53.46 SS G_CDS: -2.54 Total: -56.00 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 53.40 SS G_CDS: -0.62 Total: 52.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.96 -8.36 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273605702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.975 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds