Wall clock time and date at job start Wed Apr 1 2020 02:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34887 * 117.00174 * 180.02562 * 3 2 1 5 5 O 1.21621 * 120.00133 * 359.97438 * 4 3 2 6 6 C 1.46491 * 120.00165 * 179.97438 * 4 3 2 7 7 C 1.37993 * 126.26370 * 179.68698 * 6 4 3 8 8 C 1.39806 * 106.97020 * 179.90856 * 7 6 4 9 9 S 1.76194 * 126.08085 * 180.17046 * 8 7 6 10 10 O 1.42103 * 106.40230 * 23.76548 * 9 8 7 11 11 O 1.42096 * 106.40178 * 156.67904 * 9 8 7 12 12 N 1.65600 * 107.22187 * 270.22243 * 9 8 7 13 13 C 1.46494 * 120.00126 * 89.99635 * 12 9 8 14 14 C 1.46497 * 119.99694 * 270.00339 * 12 9 8 15 15 H 1.08997 * 109.47513 * 359.97438 * 14 12 9 16 16 C 1.52999 * 109.47322 * 119.99958 * 14 12 9 17 17 C 1.50705 * 109.46921 * 239.99678 * 14 12 9 18 18 H 1.08001 * 119.99949 * 359.97438 * 17 14 12 19 19 C 1.37871 * 119.99980 * 179.97438 * 17 14 12 20 20 N 1.31512 * 120.00232 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99793 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47282 * 90.00473 * 21 19 17 23 23 H 1.48506 * 109.47112 * 210.00132 * 21 19 17 24 24 H 1.48496 * 109.47118 * 330.00153 * 21 19 17 25 25 C 1.35488 * 107.83747 * 0.36313 * 8 7 6 26 26 N 1.34957 * 108.99076 * 359.77122 * 25 8 7 27 27 C 1.46493 * 125.63796 * 179.97438 * 26 25 8 28 28 H 1.09000 * 109.47050 * 299.99913 * 1 2 3 29 29 H 1.09001 * 109.46801 * 60.00026 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 120.00258 * 2 1 3 32 32 H 1.09000 * 109.47050 * 240.00087 * 2 1 3 33 33 H 1.08003 * 126.51550 * 0.03568 * 7 6 4 34 34 H 1.09009 * 109.46792 * 89.99882 * 13 12 9 35 35 H 1.08998 * 109.47604 * 210.00397 * 13 12 9 36 36 H 1.09000 * 109.47152 * 330.00422 * 13 12 9 37 37 H 1.08997 * 109.47151 * 59.99380 * 16 14 12 38 38 H 1.09004 * 109.47203 * 179.97438 * 16 14 12 39 39 H 1.08999 * 109.46816 * 299.99927 * 16 14 12 40 40 H 0.97002 * 120.00169 * 179.97438 * 20 19 17 41 41 H 1.08001 * 125.50280 * 179.80266 * 25 8 7 42 42 H 1.08997 * 109.47500 * 270.04150 * 27 26 25 43 43 H 1.08997 * 109.47447 * 30.04720 * 27 26 25 44 44 H 1.09004 * 109.47012 * 150.04627 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5458 -0.0005 5 8 4.0922 0.5813 -0.0005 6 6 3.9112 2.8995 -0.0011 7 6 5.2513 3.2285 0.0044 8 6 5.3288 4.6244 -0.0007 9 16 6.8081 5.5815 -0.0012 10 8 7.8238 4.7500 -0.5454 11 8 6.4661 6.8484 -0.5464 12 7 7.2197 5.8487 1.5804 13 6 8.0909 4.9017 2.2805 14 6 6.7125 7.0320 2.2794 15 1 6.0867 7.6135 1.6024 16 6 5.8853 6.5940 3.4897 17 6 7.8713 7.8771 2.7422 18 1 8.8842 7.5638 2.5366 19 6 7.6383 9.0502 3.4281 20 7 6.4049 9.4315 3.6789 21 14 9.0747 10.0974 4.0025 22 1 9.4273 11.0773 2.9439 23 1 8.6944 10.8225 5.2414 24 1 10.2441 9.2248 4.2787 25 6 4.0640 5.1103 -0.0009 26 7 3.1964 4.0765 -0.0012 27 6 1.7357 4.1881 -0.0009 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 6.0824 2.5387 0.0094 34 1 9.1312 5.1999 2.1496 35 1 7.8448 4.8981 3.3423 36 1 7.9451 3.9023 1.8705 37 1 6.5114 6.0126 4.1665 38 1 5.5083 7.4745 4.0100 39 1 5.0473 5.9827 3.1549 40 1 6.2410 10.2566 4.1618 41 1 3.7938 6.1559 -0.0013 42 1 1.3736 4.2160 1.0268 43 1 1.4411 5.1029 -0.5150 44 1 1.3056 3.3281 -0.5143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273605702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:58 Heat of formation + Delta-G solvation = -127.328602 kcal Electronic energy + Delta-G solvation = -28891.662191 eV Core-core repulsion = 24743.809180 eV Total energy + Delta-G solvation = -4147.853011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.76874 -41.10379 -38.18590 -37.82430 -37.80455 -36.75244 -34.47052 -34.24255 -32.76545 -30.90866 -30.82136 -27.83614 -27.22717 -26.94061 -25.52603 -23.42234 -22.87605 -22.25587 -21.23202 -20.02909 -19.21157 -18.48592 -18.20880 -18.10852 -17.81289 -17.03755 -16.68589 -16.61932 -16.41142 -16.18960 -15.20307 -15.07254 -14.99486 -14.75376 -14.59082 -14.51434 -13.89378 -13.66376 -13.63996 -13.50026 -13.31703 -13.26524 -13.09592 -13.05565 -12.98882 -12.92409 -12.75044 -12.53067 -12.50456 -12.32810 -12.16122 -12.08280 -11.94193 -11.77141 -11.61289 -11.09007 -10.45559 -10.38326 -9.77923 -9.57556 -8.06776 -6.18636 -0.38671 -0.04214 0.81222 1.30053 1.45982 1.48343 1.56891 1.66952 1.77940 2.35358 2.49791 2.99752 3.21975 3.33103 3.46915 3.84523 3.88846 3.98732 4.03219 4.14863 4.19216 4.32466 4.37494 4.40811 4.61123 4.67692 4.75453 4.83835 4.90009 4.91376 5.05044 5.05302 5.09089 5.19263 5.19699 5.23611 5.30794 5.45953 5.67359 5.80606 5.87570 5.94314 6.19098 6.36759 6.49685 6.88256 7.49596 8.97374 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.019304 B = 0.002981 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.107603 B = 9391.076092 C = 9859.763212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.352 6.352 4 C 0.548 3.452 5 O -0.525 6.525 6 C -0.066 4.066 7 C -0.020 4.020 8 C -0.766 4.766 9 S 2.721 3.279 10 O -0.994 6.994 11 O -0.992 6.992 12 N -0.989 5.989 13 C 0.102 3.898 14 C 0.272 3.728 15 H 0.037 0.963 16 C -0.136 4.136 17 C -0.536 4.536 18 H 0.055 0.945 19 C 0.020 3.980 20 N -0.912 5.912 21 Si 0.951 3.049 22 H -0.282 1.282 23 H -0.280 1.280 24 H -0.270 1.270 25 C 0.163 3.837 26 N -0.399 5.399 27 C 0.049 3.951 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.164 0.836 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.264 0.736 41 H 0.212 0.788 42 H 0.100 0.900 43 H 0.120 0.880 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.909 -15.569 -5.185 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.269 6.269 4 C 0.395 3.605 5 O -0.415 6.415 6 C -0.175 4.175 7 C -0.045 4.045 8 C -0.860 4.860 9 S 2.814 3.186 10 O -0.984 6.984 11 O -0.982 6.982 12 N -0.829 5.829 13 C -0.043 4.043 14 C 0.168 3.832 15 H 0.055 0.945 16 C -0.196 4.196 17 C -0.576 4.576 18 H 0.073 0.927 19 C -0.179 4.179 20 N -0.551 5.551 21 Si 0.777 3.223 22 H -0.208 1.208 23 H -0.205 1.205 24 H -0.194 1.194 25 C 0.016 3.984 26 N -0.070 5.070 27 C -0.090 4.090 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.181 0.819 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.229 0.771 42 H 0.118 0.882 43 H 0.138 0.862 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.818 -15.563 -5.818 22.940 hybrid contribution 0.498 0.261 0.672 0.876 sum -15.320 -15.302 -5.146 22.256 Atomic orbital electron populations 1.21836 0.89820 1.04596 1.03924 1.23405 0.97270 0.78418 1.02905 1.86582 1.21844 1.34453 1.84060 1.19524 0.81335 0.87140 0.72528 1.90902 1.61176 1.41523 1.47924 1.19519 0.91268 0.84295 1.22432 1.21061 0.94979 0.92832 0.95658 1.31021 1.17765 1.07185 1.30062 1.00576 0.73348 0.72223 0.72426 1.93468 1.56927 1.70345 1.77676 1.93503 1.85484 1.41691 1.77556 1.57301 1.61254 1.33407 1.30905 1.21348 0.93412 0.90705 0.98870 1.18470 0.93289 0.80623 0.90833 0.94510 1.21931 0.97850 1.00540 0.99271 1.21660 0.93564 1.06438 1.35912 0.92652 1.25556 0.98003 0.98364 0.96014 1.69948 1.19973 1.23659 1.41552 0.85665 0.80043 0.78890 0.77677 1.20775 1.20502 1.19437 1.22159 0.86918 0.94869 0.94441 1.44477 1.08974 1.04107 1.49459 1.22850 0.72705 1.07170 1.06253 0.91054 0.90924 0.88147 0.91164 0.91032 0.81878 0.93642 0.90425 0.90522 0.94223 0.91168 0.94785 0.92664 0.77130 0.88187 0.86187 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 10.29 71.98 0.74 -0.26 16 2 C 0.05 0.73 6.20 71.98 0.45 1.17 16 3 O -0.35 -6.54 7.65 -58.01 -0.44 -6.98 16 4 C 0.55 14.00 7.92 69.97 0.55 14.55 16 5 O -0.53 -16.09 16.68 19.44 0.32 -15.77 16 6 C -0.07 -1.79 6.89 40.31 0.28 -1.51 16 7 C -0.02 -0.61 10.46 22.59 0.24 -0.37 16 8 C -0.77 -24.78 6.17 22.01 0.14 -24.64 16 9 S 2.72 108.61 5.78 -56.49 -0.33 108.28 16 10 O -0.99 -42.32 16.95 -128.00 -2.17 -44.49 16 11 O -0.99 -45.34 16.41 -128.00 -2.10 -47.44 16 12 N -0.99 -41.17 3.06 -520.45 -1.59 -42.76 16 13 C 0.10 3.67 9.53 127.77 1.22 4.89 16 14 C 0.27 13.07 2.62 44.25 0.12 13.19 16 15 H 0.04 1.94 6.91 -2.39 -0.02 1.93 16 16 C -0.14 -6.00 8.95 71.98 0.64 -5.35 16 17 C -0.54 -28.73 8.37 25.60 0.21 -28.52 16 18 H 0.06 2.98 7.65 -2.91 -0.02 2.96 16 19 C 0.02 1.10 5.30 84.65 0.45 1.55 16 20 N -0.91 -49.88 11.32 21.44 0.24 -49.64 16 21 Si 0.95 42.95 29.54 68.60 2.03 44.97 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.16 4.32 11.09 83.58 0.93 5.24 16 26 N -0.40 -8.89 3.15 -534.87 -1.68 -10.58 16 27 C 0.05 0.59 10.56 127.77 1.35 1.94 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.16 4.88 8.06 -2.91 -0.02 4.86 16 34 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.08 2.66 6.43 -2.39 -0.02 2.65 16 36 H 0.08 2.33 7.79 -2.39 -0.02 2.31 16 37 H 0.04 1.65 6.66 -2.39 -0.02 1.64 16 38 H 0.07 3.43 6.07 -2.38 -0.01 3.41 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 41 H 0.21 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.11 1.18 6.15 -2.38 -0.01 1.17 16 Total: -1.00 -73.39 381.56 2.59 -70.80 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.01 Total: 11.73 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 7.31 Total: -18.13 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -3.03 Total: -102.98 kcal Atomic # 8 Polarization: -110.28 SS G_CDS: -4.39 Total: -114.67 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 108.61 SS G_CDS: -0.33 Total: 108.28 kcal Total: -73.39 2.59 -70.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273605702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.529 kcal (2) G-P(sol) polarization free energy of solvation -73.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds