Wall clock time and date at job start Wed Apr 1 2020 02:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.46918 * 2 1 4 4 C 1.34893 * 116.99732 * 179.97438 * 3 2 1 5 5 O 1.21622 * 119.99788 * 0.02562 * 4 3 2 6 6 C 1.46492 * 119.99889 * 179.97438 * 4 3 2 7 7 C 1.37994 * 126.25997 * 179.97438 * 6 4 3 8 8 C 1.39804 * 106.96677 * 180.02562 * 7 6 4 9 9 S 1.76195 * 126.07851 * 179.97438 * 8 7 6 10 10 O 1.42096 * 106.40349 * 336.48221 * 9 8 7 11 11 O 1.42108 * 106.40295 * 203.56304 * 9 8 7 12 12 N 1.65606 * 107.21884 * 90.02515 * 9 8 7 13 13 C 1.46497 * 119.99739 * 269.99846 * 12 9 8 14 14 C 1.46497 * 120.00188 * 89.99923 * 12 9 8 15 15 H 1.09007 * 109.47078 * 359.97438 * 14 12 9 16 16 C 1.53000 * 109.47021 * 240.00233 * 14 12 9 17 17 C 1.50694 * 109.47115 * 120.00014 * 14 12 9 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.35491 * 107.84099 * 0.22606 * 8 7 6 26 26 N 1.34954 * 108.98339 * 359.62702 * 25 8 7 27 27 C 1.46508 * 125.63540 * 180.15200 * 26 25 8 28 28 H 1.09001 * 109.46716 * 60.00315 * 1 2 3 29 29 H 1.09002 * 109.46797 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47019 * 300.00012 * 1 2 3 31 31 H 1.09001 * 109.47112 * 239.99439 * 2 1 3 32 32 H 1.09001 * 109.46716 * 119.99685 * 2 1 3 33 33 H 1.07998 * 126.51982 * 0.02562 * 7 6 4 34 34 H 1.09001 * 109.46905 * 270.00036 * 13 12 9 35 35 H 1.09005 * 109.47144 * 29.99977 * 13 12 9 36 36 H 1.08993 * 109.47302 * 150.00165 * 13 12 9 37 37 H 1.09002 * 109.47106 * 299.99878 * 16 14 12 38 38 H 1.08998 * 109.47089 * 59.99825 * 16 14 12 39 39 H 1.08995 * 109.47131 * 179.97438 * 16 14 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 41 41 H 1.07995 * 125.50513 * 179.77705 * 25 8 7 42 42 H 1.09002 * 109.46592 * 270.26657 * 27 26 25 43 43 H 1.08995 * 109.46894 * 30.26425 * 27 26 25 44 44 H 1.08996 * 109.47140 * 150.26528 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5457 0.0005 5 8 4.0921 0.5811 0.0005 6 6 3.9112 2.8994 0.0000 7 6 5.2514 3.2283 0.0010 8 6 5.3289 4.6242 0.0006 9 16 6.8082 5.5813 0.0020 10 8 7.8234 4.7500 0.5475 11 8 6.4657 6.8486 0.5461 12 7 7.2214 5.8476 -1.5794 13 6 8.0933 4.9001 -2.2781 14 6 6.7150 7.0306 -2.2796 15 1 6.0878 7.6121 -1.6037 16 6 5.8889 6.5918 -3.4904 17 6 7.8742 7.8753 -2.7417 18 1 8.8869 7.5625 -2.5343 19 6 7.6420 9.0481 -3.4286 20 7 6.4088 9.4293 -3.6808 21 14 9.0789 10.0955 -4.0008 22 1 8.5656 11.2947 -4.7107 23 1 9.8804 10.5209 -2.8253 24 1 9.9329 9.3035 -4.9219 25 6 4.0641 5.1102 0.0045 26 7 3.1966 4.0764 -0.0010 27 6 1.7358 4.1880 -0.0023 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 6.0824 2.5386 0.0018 34 1 9.1334 5.1984 -2.1463 35 1 7.9470 3.9010 -1.8677 36 1 7.8483 4.8961 -3.3401 37 1 6.5157 6.0101 -4.1663 38 1 5.0505 5.9808 -3.1560 39 1 5.5118 7.4720 -4.0111 40 1 6.2454 10.2545 -4.1636 41 1 3.7940 6.1558 0.0086 42 1 1.3727 4.2160 1.0251 43 1 1.4418 5.1028 -0.5166 44 1 1.3062 3.3281 -0.5161 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273605703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:03 Heat of formation + Delta-G solvation = -105.263342 kcal Electronic energy + Delta-G solvation = -28889.998197 eV Core-core repulsion = 24743.102008 eV Total energy + Delta-G solvation = -4146.896189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70361 -40.12496 -36.86014 -36.51959 -36.09445 -35.09518 -33.27807 -32.53800 -32.14940 -29.83484 -29.04222 -26.97542 -25.51925 -25.10771 -24.63263 -22.69603 -21.58671 -20.57439 -20.22081 -18.86352 -17.69186 -17.24484 -16.97481 -16.71871 -16.30747 -15.74292 -15.56592 -15.36501 -15.08220 -14.46759 -14.31282 -14.11710 -13.71742 -13.46777 -13.15013 -13.07057 -12.84037 -12.80942 -12.68255 -12.52200 -12.28471 -11.93352 -11.90153 -11.63480 -11.38196 -11.29385 -11.16116 -11.01749 -10.91763 -10.90936 -10.76710 -10.70227 -10.40629 -10.24871 -9.95644 -9.29785 -9.20681 -8.64609 -8.42579 -7.89530 -6.05124 -4.10755 1.03132 1.14593 2.02749 2.23238 2.58023 2.86604 3.33214 3.36936 3.41021 3.89167 4.34472 4.41509 4.47896 4.52164 4.52806 4.57752 4.73511 4.86080 4.90851 5.01847 5.15258 5.24337 5.26736 5.34452 5.39128 5.48908 5.56882 5.71631 5.82151 6.05593 6.24985 6.34334 6.45022 6.56716 6.69122 6.80464 6.84228 6.86440 7.04661 7.49452 7.49610 7.67241 7.81934 8.06553 8.30797 8.91499 9.54745 11.00650 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.002981 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.046785 B = 9392.021225 C = 9860.433144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.363 6.363 4 C 0.543 3.457 5 O -0.499 6.499 6 C -0.066 4.066 7 C -0.001 4.001 8 C -0.754 4.754 9 S 2.710 3.290 10 O -0.975 6.975 11 O -0.958 6.958 12 N -0.981 5.981 13 C 0.109 3.891 14 C 0.268 3.732 15 H 0.061 0.939 16 C -0.149 4.149 17 C -0.517 4.517 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.893 5.893 21 Si 0.898 3.102 22 H -0.287 1.287 23 H -0.276 1.276 24 H -0.277 1.277 25 C 0.160 3.840 26 N -0.413 5.413 27 C 0.060 3.940 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.165 0.835 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.009 0.991 39 H 0.092 0.908 40 H 0.263 0.737 41 H 0.193 0.807 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.942 -14.619 5.292 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.389 3.611 5 O -0.386 6.386 6 C -0.173 4.173 7 C -0.026 4.026 8 C -0.844 4.844 9 S 2.797 3.203 10 O -0.965 6.965 11 O -0.948 6.948 12 N -0.822 5.822 13 C -0.038 4.038 14 C 0.165 3.835 15 H 0.078 0.922 16 C -0.209 4.209 17 C -0.557 4.557 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.726 3.274 22 H -0.213 1.213 23 H -0.201 1.201 24 H -0.203 1.203 25 C 0.016 3.984 26 N -0.085 5.085 27 C -0.081 4.081 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.182 0.818 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.028 0.972 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.210 0.790 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.864 -14.613 5.931 20.999 hybrid contribution 0.032 0.070 -0.758 0.761 sum -13.832 -14.543 5.173 20.727 Atomic orbital electron populations 1.21820 0.92454 1.03177 1.03492 1.23063 0.95312 0.79822 1.02933 1.86582 1.23873 1.32739 1.84875 1.19632 0.80479 0.87865 0.73136 1.90913 1.60275 1.40815 1.46625 1.19432 0.91449 0.83227 1.23203 1.20977 0.93894 0.93174 0.94590 1.31715 1.18460 1.07172 1.27020 1.01396 0.72920 0.72812 0.73146 1.93501 1.55291 1.70265 1.77414 1.93556 1.84824 1.39503 1.76956 1.57412 1.60285 1.33565 1.30889 1.21175 0.94064 0.90032 0.98483 1.18744 0.94167 0.79911 0.90666 0.92174 1.22134 0.97319 1.01207 1.00217 1.21313 0.93015 1.05621 1.35729 0.91869 1.24895 0.95886 0.97310 0.95770 1.69844 1.18784 1.23427 1.41091 0.86558 0.82417 0.79563 0.78872 1.21308 1.20113 1.20262 1.21892 0.87399 0.93733 0.95405 1.44222 1.07369 1.05333 1.51614 1.22429 0.75708 1.05534 1.04416 0.91425 0.90059 0.91468 0.90966 0.91011 0.81783 0.93080 0.93013 0.91023 0.94693 0.97189 0.88907 0.92724 0.78999 0.89942 0.88749 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.37 16 2 C 0.06 0.49 6.20 37.16 0.23 0.72 16 3 O -0.36 -3.78 7.65 -41.02 -0.31 -4.09 16 4 C 0.54 7.33 7.92 34.06 0.27 7.60 16 5 O -0.50 -7.82 16.68 -19.36 -0.32 -8.14 16 6 C -0.07 -0.93 6.88 -82.00 -0.56 -1.50 16 7 C 0.00 -0.01 10.46 -39.09 -0.41 -0.42 16 8 C -0.75 -12.40 6.18 -39.98 -0.25 -12.64 16 9 S 2.71 53.42 5.79 -107.50 -0.62 52.79 16 10 O -0.97 -20.45 16.94 -57.17 -0.97 -21.42 16 11 O -0.96 -21.43 16.41 -57.17 -0.94 -22.37 16 12 N -0.98 -20.29 3.06 -115.86 -0.35 -20.64 16 13 C 0.11 1.96 9.53 59.85 0.57 2.53 16 14 C 0.27 6.38 2.62 -69.09 -0.18 6.20 16 15 H 0.06 1.55 6.91 -51.92 -0.36 1.19 16 16 C -0.15 -3.31 8.95 37.16 0.33 -2.98 16 17 C -0.52 -13.70 8.37 -34.44 -0.29 -13.99 16 18 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 20 N -0.89 -24.29 11.32 55.43 0.63 -23.67 16 21 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.16 2.25 11.09 -17.16 -0.19 2.06 16 26 N -0.41 -5.09 3.15 -120.40 -0.38 -5.47 16 27 C 0.06 0.47 10.56 59.85 0.63 1.10 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.16 2.44 8.06 -52.49 -0.42 2.01 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.80 7.79 -51.93 -0.40 0.39 16 36 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 37 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 40 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.19 2.31 8.06 -52.49 -0.42 1.88 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.75 6.15 -51.93 -0.32 0.43 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -33.93 381.56 -8.36 -42.30 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.26 Total: -0.85 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 0.44 Total: -10.09 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.11 Total: -49.78 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -2.54 Total: -56.02 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 53.42 SS G_CDS: -0.62 Total: 52.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.93 -8.36 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273605703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.965 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds