Wall clock time and date at job start Wed Apr 1 2020 02:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.47034 * 2 1 4 4 C 1.34887 * 117.00403 * 179.97438 * 3 2 1 5 5 O 1.21624 * 119.99726 * 0.02562 * 4 3 2 6 6 C 1.46491 * 120.00543 * 180.02562 * 4 3 2 7 7 C 1.37991 * 126.26611 * 180.18847 * 6 4 3 8 8 C 1.39794 * 106.96807 * 180.25494 * 7 6 4 9 9 S 1.76202 * 126.07879 * 179.77731 * 8 7 6 10 10 O 1.42097 * 106.40246 * 23.49817 * 9 8 7 11 11 O 1.42105 * 106.40202 * 156.42009 * 9 8 7 12 12 N 1.65602 * 107.22054 * 269.95782 * 9 8 7 13 13 C 1.46501 * 120.00162 * 270.00309 * 12 9 8 14 14 C 1.53000 * 109.47174 * 94.99583 * 13 12 9 15 15 C 1.46502 * 119.99803 * 89.99841 * 12 9 8 16 16 C 1.50692 * 109.47054 * 95.00306 * 15 12 9 17 17 H 1.08003 * 120.00196 * 0.02562 * 16 15 12 18 18 C 1.37874 * 120.00111 * 179.97438 * 16 15 12 19 19 N 1.31518 * 119.99882 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00246 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47236 * 59.99788 * 20 18 16 22 22 H 1.48504 * 109.47385 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47064 * 300.00038 * 20 18 16 24 24 C 1.35485 * 107.84326 * 359.74279 * 8 7 6 25 25 N 1.34957 * 108.98658 * 359.97438 * 24 8 7 26 26 C 1.46499 * 125.63725 * 180.02562 * 25 24 8 27 27 H 1.08999 * 109.47326 * 299.99801 * 1 2 3 28 28 H 1.08996 * 109.47583 * 60.00018 * 1 2 3 29 29 H 1.09009 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47326 * 240.00198 * 2 1 3 31 31 H 1.08997 * 109.47077 * 120.00110 * 2 1 3 32 32 H 1.08002 * 126.51550 * 359.97438 * 7 6 4 33 33 H 1.08997 * 109.46954 * 214.99547 * 13 12 9 34 34 H 1.09003 * 109.47041 * 334.99492 * 13 12 9 35 35 H 1.09003 * 109.46979 * 180.02562 * 14 13 12 36 36 H 1.08997 * 109.47151 * 299.99844 * 14 13 12 37 37 H 1.09003 * 109.47210 * 60.00013 * 14 13 12 38 38 H 1.08999 * 109.46818 * 215.00503 * 15 12 9 39 39 H 1.09002 * 109.47178 * 335.00187 * 15 12 9 40 40 H 0.97001 * 119.99871 * 180.02562 * 19 18 16 41 41 H 1.08004 * 125.50845 * 179.97438 * 24 8 7 42 42 H 1.09002 * 109.47391 * 90.02143 * 26 25 24 43 43 H 1.09001 * 109.46813 * 330.02199 * 26 25 24 44 44 H 1.09004 * 109.47041 * 210.02326 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3512 1.5458 0.0005 5 8 4.0921 0.5813 0.0005 6 6 3.9111 2.8995 0.0011 7 6 5.2512 3.2285 -0.0019 8 6 5.3286 4.6243 0.0060 9 16 6.8080 5.5814 0.0116 10 8 7.8241 4.7530 -0.5365 11 8 6.4662 6.8515 -0.5266 12 7 7.2187 5.8398 1.5949 13 6 6.7112 7.0192 2.3003 14 6 5.4430 6.6462 3.0707 15 6 8.0896 4.8888 2.2903 16 6 9.5165 5.3680 2.2168 17 1 9.7511 6.2890 1.7039 18 6 10.5223 4.6312 2.8053 19 7 10.2365 3.5099 3.4304 20 14 12.2910 5.2255 2.7149 21 1 12.3987 6.5589 3.3597 22 1 13.1736 4.2621 3.4207 23 1 12.7065 5.3283 1.2929 24 6 4.0639 5.1102 0.0078 25 7 3.1964 4.0764 0.0007 26 6 1.7356 4.1880 -0.0004 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 6.0823 2.5388 -0.0048 33 1 7.4675 7.3787 2.9979 34 1 6.4807 7.8029 1.5787 35 1 5.0651 7.5239 3.5952 36 1 4.6866 6.2867 2.3731 37 1 5.6735 5.8625 3.7924 38 1 7.7849 4.8133 3.3341 39 1 8.0102 3.9102 1.8169 40 1 10.9441 2.9917 3.8447 41 1 3.7937 6.1559 0.0138 42 1 1.3746 4.2212 -1.0284 43 1 1.4405 5.1003 0.5179 44 1 1.3050 3.3255 0.5083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273671945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:27 Heat of formation + Delta-G solvation = -109.735889 kcal Electronic energy + Delta-G solvation = -28894.282727 eV Core-core repulsion = 24747.192593 eV Total energy + Delta-G solvation = -4147.090133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69517 -40.07712 -36.79667 -36.48976 -35.96201 -35.02823 -33.28995 -32.58814 -32.11554 -29.99940 -29.75737 -26.98707 -26.52148 -24.63176 -23.05956 -22.66596 -21.80891 -21.27489 -20.19207 -18.84514 -17.70296 -17.18818 -16.92578 -16.63436 -16.28238 -15.81572 -15.59613 -15.36046 -15.18597 -14.36886 -14.27546 -14.10675 -13.84082 -13.61023 -13.31782 -13.08976 -12.93546 -12.78020 -12.75407 -12.50215 -12.25750 -12.02060 -11.92953 -11.87541 -11.60124 -11.33484 -11.22484 -10.93478 -10.92278 -10.85677 -10.84491 -10.65051 -10.38743 -10.33340 -9.91447 -9.69331 -9.24908 -8.62647 -8.35473 -7.98062 -5.97570 -4.01280 1.06569 1.17578 2.02499 2.26324 2.56750 2.92902 3.39929 3.43623 3.48297 3.89367 4.35709 4.43249 4.50392 4.56224 4.58063 4.60672 4.65820 4.84435 4.91027 4.96469 5.15664 5.22125 5.36405 5.37638 5.44511 5.48356 5.52798 5.60281 5.73477 5.76623 5.91192 6.02893 6.10993 6.31683 6.35681 6.60358 6.62471 6.71295 6.84470 7.34518 7.50067 7.56440 7.70766 7.99726 8.29608 9.00731 9.63321 11.10965 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.003312 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.089700 B = 8453.172802 C = 9387.328526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.541 3.459 5 O -0.492 6.492 6 C -0.064 4.064 7 C 0.008 3.992 8 C -0.751 4.751 9 S 2.710 3.290 10 O -0.942 6.942 11 O -0.983 6.983 12 N -0.981 5.981 13 C 0.117 3.883 14 C -0.171 4.171 15 C 0.257 3.743 16 C -0.527 4.527 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.147 3.853 25 N -0.413 5.413 26 C 0.061 3.939 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.169 0.831 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.035 0.965 39 H 0.040 0.960 40 H 0.263 0.737 41 H 0.189 0.811 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.459 -0.254 -4.394 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.283 6.283 4 C 0.386 3.614 5 O -0.379 6.379 6 C -0.172 4.172 7 C -0.018 4.018 8 C -0.841 4.841 9 S 2.797 3.203 10 O -0.932 6.932 11 O -0.973 6.973 12 N -0.821 5.821 13 C -0.009 4.009 14 C -0.230 4.230 15 C 0.135 3.865 16 C -0.567 4.567 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.200 1.200 24 C 0.004 3.996 25 N -0.086 5.086 26 C -0.080 4.080 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.206 0.794 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.179 -0.562 -5.011 23.721 hybrid contribution 0.311 -0.378 0.399 0.631 sum -22.868 -0.939 -4.611 23.347 Atomic orbital electron populations 1.21813 0.92519 1.03167 1.03364 1.23060 0.95217 0.79861 1.03048 1.86558 1.23943 1.32742 1.85035 1.19626 0.80460 0.87904 0.73379 1.90945 1.60183 1.40729 1.46092 1.19449 0.91384 0.83140 1.23199 1.21102 0.94029 0.93369 0.93257 1.31761 1.18187 1.07524 1.26671 1.01431 0.72756 0.72990 0.73172 1.93596 1.53879 1.69364 1.76381 1.93472 1.85539 1.40557 1.77739 1.57437 1.60583 1.33233 1.30828 1.21162 0.95550 0.87313 0.96901 1.22262 0.98095 1.01792 1.00892 1.19061 0.87688 0.86755 0.92949 1.21455 0.91819 1.08386 1.35001 0.92131 1.24919 0.99144 0.94796 0.95122 1.69917 1.33244 1.14284 1.36031 0.86600 0.84286 0.78349 0.78457 1.20258 1.21289 1.19964 1.21745 0.87460 0.93417 0.97011 1.44188 1.07204 1.05395 1.51804 1.22403 0.75907 1.05332 1.04368 0.91499 0.91536 0.90066 0.90979 0.90901 0.81363 0.89543 0.90393 0.92291 0.93660 0.91916 0.94661 0.94210 0.92704 0.79449 0.89984 0.89077 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.40 16 2 C 0.06 0.52 6.20 37.16 0.23 0.75 16 3 O -0.36 -3.94 7.65 -41.00 -0.31 -4.26 16 4 C 0.54 7.77 7.92 34.06 0.27 8.04 16 5 O -0.49 -8.47 16.68 -19.36 -0.32 -8.79 16 6 C -0.06 -0.95 6.88 -82.00 -0.56 -1.51 16 7 C 0.01 0.13 10.46 -39.09 -0.41 -0.28 16 8 C -0.75 -12.43 6.18 -39.98 -0.25 -12.67 16 9 S 2.71 54.20 5.79 -107.50 -0.62 53.58 16 10 O -0.94 -22.85 16.84 -57.17 -0.96 -23.82 16 11 O -0.98 -19.56 16.40 -57.17 -0.94 -20.49 16 12 N -0.98 -20.14 2.77 -115.66 -0.32 -20.46 16 13 C 0.12 1.96 6.40 -4.04 -0.03 1.94 16 14 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 15 C 0.26 6.44 5.10 -5.20 -0.03 6.41 16 16 C -0.53 -14.78 9.38 -34.45 -0.32 -15.10 16 17 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 20 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.15 1.88 10.28 -17.16 -0.18 1.70 16 25 N -0.41 -4.84 3.15 -120.40 -0.38 -5.22 16 26 C 0.06 0.42 10.57 59.85 0.63 1.05 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.17 3.02 8.06 -52.49 -0.42 2.60 16 33 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 34 H 0.08 1.20 6.91 -51.93 -0.36 0.84 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.55 7.31 -51.93 -0.38 0.17 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 39 H 0.04 1.07 7.61 -51.93 -0.40 0.67 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.19 1.75 8.06 -52.48 -0.42 1.32 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.70 6.13 -51.93 -0.32 0.38 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -36.33 388.45 -8.75 -45.08 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.49 Total: -2.44 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 0.03 Total: -10.35 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.04 Total: -51.36 kcal Atomic # 8 Polarization: -54.82 SS G_CDS: -2.54 Total: -57.36 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 54.20 SS G_CDS: -0.62 Total: 53.58 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.33 -8.75 -45.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273671945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.654 kcal (2) G-P(sol) polarization free energy of solvation -36.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds