Wall clock time and date at job start Wed Apr 1 2020 02:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.47034 * 2 1 4 4 C 1.34887 * 117.00403 * 179.97438 * 3 2 1 5 5 O 1.21624 * 119.99726 * 0.02562 * 4 3 2 6 6 C 1.46491 * 120.00543 * 180.02562 * 4 3 2 7 7 C 1.37991 * 126.26611 * 180.18847 * 6 4 3 8 8 C 1.39794 * 106.96807 * 180.25494 * 7 6 4 9 9 S 1.76202 * 126.07879 * 179.77731 * 8 7 6 10 10 O 1.42097 * 106.40246 * 23.49817 * 9 8 7 11 11 O 1.42105 * 106.40202 * 156.42009 * 9 8 7 12 12 N 1.65602 * 107.22054 * 269.95782 * 9 8 7 13 13 C 1.46501 * 120.00162 * 270.00309 * 12 9 8 14 14 C 1.53000 * 109.47174 * 94.99583 * 13 12 9 15 15 C 1.46502 * 119.99803 * 89.99841 * 12 9 8 16 16 C 1.50692 * 109.47054 * 95.00306 * 15 12 9 17 17 H 1.08003 * 120.00196 * 0.02562 * 16 15 12 18 18 C 1.37874 * 120.00111 * 179.97438 * 16 15 12 19 19 N 1.31518 * 119.99882 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00246 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47236 * 59.99788 * 20 18 16 22 22 H 1.48504 * 109.47385 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47064 * 300.00038 * 20 18 16 24 24 C 1.35485 * 107.84326 * 359.74279 * 8 7 6 25 25 N 1.34957 * 108.98658 * 359.97438 * 24 8 7 26 26 C 1.46499 * 125.63725 * 180.02562 * 25 24 8 27 27 H 1.08999 * 109.47326 * 299.99801 * 1 2 3 28 28 H 1.08996 * 109.47583 * 60.00018 * 1 2 3 29 29 H 1.09009 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47326 * 240.00198 * 2 1 3 31 31 H 1.08997 * 109.47077 * 120.00110 * 2 1 3 32 32 H 1.08002 * 126.51550 * 359.97438 * 7 6 4 33 33 H 1.08997 * 109.46954 * 214.99547 * 13 12 9 34 34 H 1.09003 * 109.47041 * 334.99492 * 13 12 9 35 35 H 1.09003 * 109.46979 * 180.02562 * 14 13 12 36 36 H 1.08997 * 109.47151 * 299.99844 * 14 13 12 37 37 H 1.09003 * 109.47210 * 60.00013 * 14 13 12 38 38 H 1.08999 * 109.46818 * 215.00503 * 15 12 9 39 39 H 1.09002 * 109.47178 * 335.00187 * 15 12 9 40 40 H 0.97001 * 119.99871 * 180.02562 * 19 18 16 41 41 H 1.08004 * 125.50845 * 179.97438 * 24 8 7 42 42 H 1.09002 * 109.47391 * 90.02143 * 26 25 24 43 43 H 1.09001 * 109.46813 * 330.02199 * 26 25 24 44 44 H 1.09004 * 109.47041 * 210.02326 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3512 1.5458 0.0005 5 8 4.0921 0.5813 0.0005 6 6 3.9111 2.8995 0.0011 7 6 5.2512 3.2285 -0.0019 8 6 5.3286 4.6243 0.0060 9 16 6.8080 5.5814 0.0116 10 8 7.8241 4.7530 -0.5365 11 8 6.4662 6.8515 -0.5266 12 7 7.2187 5.8398 1.5949 13 6 6.7112 7.0192 2.3003 14 6 5.4430 6.6462 3.0707 15 6 8.0896 4.8888 2.2903 16 6 9.5165 5.3680 2.2168 17 1 9.7511 6.2890 1.7039 18 6 10.5223 4.6312 2.8053 19 7 10.2365 3.5099 3.4304 20 14 12.2910 5.2255 2.7149 21 1 12.3987 6.5589 3.3597 22 1 13.1736 4.2621 3.4207 23 1 12.7065 5.3283 1.2929 24 6 4.0639 5.1102 0.0078 25 7 3.1964 4.0764 0.0007 26 6 1.7356 4.1880 -0.0004 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 6.0823 2.5388 -0.0048 33 1 7.4675 7.3787 2.9979 34 1 6.4807 7.8029 1.5787 35 1 5.0651 7.5239 3.5952 36 1 4.6866 6.2867 2.3731 37 1 5.6735 5.8625 3.7924 38 1 7.7849 4.8133 3.3341 39 1 8.0102 3.9102 1.8169 40 1 10.9441 2.9917 3.8447 41 1 3.7937 6.1559 0.0138 42 1 1.3746 4.2212 -1.0284 43 1 1.4405 5.1003 0.5179 44 1 1.3050 3.3255 0.5083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273671945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:26 Heat of formation + Delta-G solvation = -134.803654 kcal Electronic energy + Delta-G solvation = -28895.369747 eV Core-core repulsion = 24747.192593 eV Total energy + Delta-G solvation = -4148.177153 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.78254 -41.12759 -38.15282 -37.83828 -37.60279 -36.72452 -34.66987 -34.24297 -32.78528 -31.48648 -30.89022 -28.44984 -27.79318 -25.58128 -24.88502 -23.46670 -23.24262 -22.52689 -21.25346 -20.02154 -19.28679 -18.39904 -18.24139 -18.20916 -17.83555 -17.20088 -16.65615 -16.59277 -16.43353 -16.22368 -15.40153 -15.09762 -15.00534 -14.72790 -14.64056 -14.55603 -13.92690 -13.76066 -13.64352 -13.59277 -13.41983 -13.31952 -13.26222 -13.03385 -13.00682 -12.92395 -12.71173 -12.62250 -12.51878 -12.30076 -12.11916 -12.10375 -11.93523 -11.71269 -11.63414 -11.54151 -10.55513 -10.36910 -9.80097 -9.68386 -8.15455 -6.27302 -0.37810 -0.06012 0.81289 1.27224 1.41159 1.45725 1.52416 1.66944 1.75369 2.33779 2.46194 3.00104 3.15421 3.34474 3.47027 3.83542 3.90212 3.96755 4.02496 4.09882 4.14102 4.31180 4.41017 4.41639 4.52855 4.55771 4.64784 4.69740 4.78508 4.85396 4.90675 5.03670 5.10932 5.15078 5.22607 5.24500 5.29184 5.43399 5.48193 5.59268 5.77535 5.90997 6.03410 6.16164 6.48196 6.81432 7.41099 8.92021 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.003312 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.089700 B = 8453.172802 C = 9387.328526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.348 6.348 4 C 0.545 3.455 5 O -0.531 6.531 6 C -0.065 4.065 7 C -0.028 4.028 8 C -0.769 4.769 9 S 2.720 3.280 10 O -0.999 6.999 11 O -0.982 6.982 12 N -0.989 5.989 13 C 0.106 3.894 14 C -0.164 4.164 15 C 0.275 3.725 16 C -0.545 4.545 17 H 0.056 0.944 18 C 0.009 3.991 19 N -0.927 5.927 20 Si 0.956 3.044 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.277 1.277 24 C 0.173 3.827 25 N -0.395 5.395 26 C 0.048 3.952 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.140 0.860 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.027 0.973 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.234 0.766 42 H 0.103 0.897 43 H 0.129 0.871 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.846 1.580 -4.360 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.265 6.265 4 C 0.392 3.608 5 O -0.421 6.421 6 C -0.174 4.174 7 C -0.054 4.054 8 C -0.864 4.864 9 S 2.812 3.188 10 O -0.989 6.989 11 O -0.973 6.973 12 N -0.827 5.827 13 C -0.018 4.018 14 C -0.223 4.223 15 C 0.151 3.849 16 C -0.585 4.585 17 H 0.074 0.926 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.781 3.219 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.203 1.203 24 C 0.026 3.974 25 N -0.067 5.067 26 C -0.090 4.090 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.158 0.842 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.250 0.750 42 H 0.121 0.879 43 H 0.147 0.853 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -26.588 1.325 -4.968 27.081 hybrid contribution 1.161 -0.982 0.344 1.559 sum -25.427 0.343 -4.624 25.847 Atomic orbital electron populations 1.21824 0.89372 1.04628 1.04085 1.23418 0.97530 0.78515 1.02728 1.86565 1.21487 1.34322 1.84109 1.19623 0.81413 0.87278 0.72520 1.90927 1.61385 1.41859 1.47922 1.19355 0.90871 0.84564 1.22565 1.20977 0.94924 0.93708 0.95805 1.31015 1.18258 1.06733 1.30382 1.00611 0.73041 0.72635 0.72509 1.93523 1.57241 1.70614 1.77567 1.93454 1.85674 1.40581 1.77583 1.57301 1.60856 1.33751 1.30799 1.21467 0.96718 0.86348 0.97310 1.22203 0.96787 1.02693 1.00633 1.18531 0.87479 0.86476 0.92377 1.21832 0.93591 1.08310 1.34730 0.92562 1.25776 1.03422 0.94955 0.94817 1.70029 1.34547 1.15314 1.36824 0.85637 0.79268 0.78705 0.78285 1.18514 1.20407 1.20271 1.22309 0.85870 0.95217 0.93962 1.44477 1.09123 1.03774 1.49306 1.22904 0.72260 1.07391 1.06427 0.90798 0.90716 0.88238 0.91300 0.91467 0.84240 0.90703 0.88541 0.88913 0.91847 0.93839 0.95520 0.97177 0.92528 0.74979 0.87866 0.85294 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 10.29 71.98 0.74 -0.33 16 2 C 0.05 0.80 6.20 71.98 0.45 1.25 16 3 O -0.35 -6.96 7.65 -58.01 -0.44 -7.40 16 4 C 0.55 15.67 7.92 69.97 0.55 16.22 16 5 O -0.53 -19.10 16.68 19.43 0.32 -18.78 16 6 C -0.06 -1.89 6.88 40.31 0.28 -1.62 16 7 C -0.03 -1.03 10.46 22.59 0.24 -0.79 16 8 C -0.77 -25.42 6.18 22.01 0.14 -25.28 16 9 S 2.72 111.52 5.79 -56.49 -0.33 111.19 16 10 O -1.00 -51.69 16.84 -128.00 -2.16 -53.84 16 11 O -0.98 -38.23 16.40 -128.00 -2.10 -40.33 16 12 N -0.99 -41.63 2.77 -519.85 -1.44 -43.06 16 13 C 0.11 3.48 6.40 86.38 0.55 4.04 16 14 C -0.16 -4.11 10.24 71.98 0.74 -3.38 16 15 C 0.28 14.51 5.10 85.63 0.44 14.94 16 16 C -0.55 -31.71 9.38 25.60 0.24 -31.47 16 17 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 18 C 0.01 0.55 5.46 84.65 0.46 1.01 16 19 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 20 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 24 C 0.17 3.87 10.28 83.58 0.86 4.72 16 25 N -0.40 -8.06 3.15 -534.85 -1.68 -9.74 16 26 C 0.05 0.43 10.57 127.77 1.35 1.78 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.14 5.68 8.06 -2.91 -0.02 5.66 16 33 H 0.07 2.59 8.11 -2.39 -0.02 2.57 16 34 H 0.10 2.78 6.91 -2.39 -0.02 2.76 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.34 7.31 -2.39 -0.02 1.32 16 37 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.03 1.43 8.11 -2.39 -0.02 1.41 16 39 H 0.01 0.59 7.61 -2.39 -0.02 0.57 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.23 3.01 8.06 -2.91 -0.02 2.99 16 42 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.10 0.96 6.13 -2.38 -0.01 0.95 16 Total: -1.00 -84.29 388.45 2.52 -81.77 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.00 Total: 7.44 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 7.03 Total: -18.91 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -2.84 Total: -109.05 kcal Atomic # 8 Polarization: -115.98 SS G_CDS: -4.37 Total: -120.35 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 111.52 SS G_CDS: -0.33 Total: 111.19 kcal Total: -84.29 2.52 -81.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273671945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.035 kcal (2) G-P(sol) polarization free energy of solvation -84.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds