Wall clock time and date at job start Wed Apr 1 2020 02:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46490 * 109.47276 * 209.70863 * 3 2 1 5 5 C 1.36943 * 120.00030 * 274.99948 * 4 3 2 6 6 H 1.07998 * 120.00409 * 187.46796 * 5 4 3 7 7 C 1.38815 * 119.99780 * 7.47109 * 5 4 3 8 8 N 1.31620 * 120.00080 * 24.38933 * 7 5 4 9 9 Si 1.86797 * 120.00070 * 204.39430 * 7 5 4 10 10 H 1.48501 * 109.47195 * 59.99703 * 9 7 5 11 11 H 1.48497 * 109.47409 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46776 * 299.99683 * 9 7 5 13 13 S 1.65604 * 120.00394 * 94.99643 * 4 3 2 14 14 O 1.42099 * 104.27674 * 159.92676 * 13 4 3 15 15 O 1.42098 * 104.27028 * 32.07181 * 13 4 3 16 16 C 1.81395 * 104.44884 * 276.00032 * 13 4 3 17 17 C 1.53358 * 109.41934 * 305.12190 * 16 13 4 18 18 C 1.53188 * 109.14910 * 178.67626 * 17 16 13 19 19 N 1.46925 * 108.89224 * 54.58001 * 18 17 16 20 20 C 1.34780 * 120.63171 * 126.29880 * 19 18 17 21 21 O 1.21509 * 119.99516 * 359.97438 * 20 19 18 22 22 O 1.34634 * 120.00219 * 179.97438 * 20 19 18 23 23 C 1.45199 * 116.99897 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.47090 * 180.02562 * 23 22 20 25 25 C 1.46927 * 118.74062 * 306.31989 * 19 18 17 26 26 C 1.53040 * 109.45626 * 185.00001 * 16 13 4 27 27 H 4.40640 * 5.51408 * 179.97438 * 4 1 2 28 28 H 1.09002 * 109.46992 * 89.70149 * 3 2 1 29 29 H 1.09004 * 109.47061 * 329.70720 * 3 2 1 30 30 H 0.96999 * 120.00112 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46344 * 65.02800 * 16 13 4 32 32 H 1.09002 * 109.67669 * 58.71303 * 17 16 13 33 33 H 1.08994 * 109.47299 * 298.51509 * 17 16 13 34 34 H 1.09005 * 109.58953 * 294.72700 * 18 17 16 35 35 H 1.08991 * 109.58823 * 174.44032 * 18 17 16 36 36 H 1.08998 * 109.47411 * 300.00288 * 23 22 20 37 37 H 1.09000 * 109.46929 * 60.00835 * 23 22 20 38 38 H 1.08996 * 109.47018 * 180.02562 * 24 23 22 39 39 H 1.08998 * 109.46969 * 300.00241 * 24 23 22 40 40 H 1.08998 * 109.47121 * 59.99741 * 24 23 22 41 41 H 1.09004 * 109.58839 * 173.40072 * 25 19 18 42 42 H 1.09000 * 109.58930 * 293.67661 * 25 19 18 43 43 H 1.08996 * 109.50480 * 61.43524 * 26 16 13 44 44 H 1.09001 * 109.52771 * 301.34710 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2004 0.6845 5 6 3.2641 2.3766 -0.0047 6 1 3.7353 3.2279 0.4641 7 6 2.7904 2.4748 -1.3058 8 7 1.8291 1.6760 -1.7183 9 14 3.5174 3.7406 -2.4714 10 1 4.9707 3.4839 -2.6371 11 1 2.8443 3.6422 -3.7914 12 1 3.3156 5.1015 -1.9126 13 16 3.5277 1.1346 2.2916 14 8 4.3747 2.2579 2.4912 15 8 4.0094 -0.1889 2.4802 16 6 1.9489 1.3664 3.1544 17 6 1.2889 2.6632 2.6701 18 6 -0.0586 2.8359 3.3780 19 7 0.1551 2.7715 4.8301 20 6 -0.2874 3.7589 5.6339 21 8 -0.8689 4.7142 5.1588 22 8 -0.0850 3.6866 6.9629 23 6 -0.5882 4.7860 7.7670 24 6 -0.2664 4.5291 9.2406 25 6 0.8608 1.6106 5.3896 26 6 2.1993 1.4496 4.6619 27 1 -1.0502 -0.0002 -0.0003 28 1 3.0093 -0.0045 -1.0277 29 1 3.0097 -0.8866 0.5184 30 1 1.4984 1.7443 -2.6276 31 1 1.2915 0.5236 2.9414 32 1 1.1304 2.6142 1.5928 33 1 1.9345 3.5093 2.9053 34 1 -0.7366 2.0388 3.0728 35 1 -0.4886 3.8021 3.1144 36 1 -0.1153 5.7151 7.4488 37 1 -1.6677 4.8653 7.6391 38 1 -0.6445 5.3542 9.8442 39 1 -0.7390 3.6000 9.5591 40 1 0.8132 4.4499 9.3683 41 1 1.0398 1.7694 6.4530 42 1 0.2568 0.7140 5.2507 43 1 2.8364 2.3070 4.8782 44 1 2.6899 0.5371 5.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281474936.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:33 Heat of formation + Delta-G solvation = -78.068460 kcal Electronic energy + Delta-G solvation = -29682.907189 eV Core-core repulsion = 25537.190258 eV Total energy + Delta-G solvation = -4145.716931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.53200 -38.06001 -36.43405 -36.23521 -35.81288 -34.60457 -32.91671 -32.05253 -31.63022 -31.24558 -30.78888 -26.63763 -25.65990 -23.96507 -23.50275 -22.89305 -21.40609 -19.78805 -18.52463 -18.09168 -17.83556 -17.06261 -16.75303 -16.65366 -16.47512 -15.56180 -14.85791 -14.73974 -14.66511 -14.55753 -14.01327 -13.71857 -13.50411 -13.37412 -13.34189 -12.95391 -12.91698 -12.49940 -12.30291 -12.04275 -11.97373 -11.85836 -11.73007 -11.31627 -11.13860 -11.02127 -10.86426 -10.82894 -10.59994 -10.59025 -10.50745 -10.44306 -10.32240 -10.25961 -9.76401 -9.45838 -9.26733 -8.89086 -8.57810 -8.30300 -6.62460 -3.98853 1.45829 2.18185 2.89712 3.08227 3.12827 3.18861 3.60073 3.87631 3.96740 4.11513 4.37838 4.61916 4.77262 4.79972 4.88661 4.93687 5.04367 5.11685 5.25194 5.27311 5.42754 5.51057 5.53126 5.58218 5.61188 5.65089 5.73895 5.78167 5.94275 5.99497 6.07047 6.15779 6.25187 6.34620 6.42151 6.63513 6.68492 6.73454 6.93289 7.10112 7.21659 7.44485 8.13822 8.34887 8.51981 8.85019 8.95218 10.26510 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.003657 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.085704 B = 7654.667154 C = 8089.842168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.107 4.107 3 C 0.235 3.765 4 N -0.795 5.795 5 C -0.241 4.241 6 H 0.124 0.876 7 C 0.029 3.971 8 N -0.817 5.817 9 Si 0.929 3.071 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.268 1.268 13 S 2.475 3.525 14 O -0.981 6.981 15 O -0.997 6.997 16 C -0.626 4.626 17 C -0.102 4.102 18 C 0.134 3.866 19 N -0.587 5.587 20 C 0.649 3.351 21 O -0.578 6.578 22 O -0.372 6.372 23 C 0.081 3.919 24 C -0.152 4.152 25 C 0.121 3.879 26 C -0.116 4.116 27 H 0.195 0.805 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.277 0.723 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.113 0.342 10.393 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.109 4.109 3 C 0.110 3.890 4 N -0.616 5.616 5 C -0.388 4.388 6 H 0.142 0.858 7 C -0.183 4.183 8 N -0.455 5.455 9 Si 0.754 3.246 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.193 1.193 13 S 2.574 3.426 14 O -0.970 6.970 15 O -0.987 6.987 16 C -0.724 4.724 17 C -0.141 4.141 18 C 0.013 3.987 19 N -0.327 5.327 20 C 0.403 3.597 21 O -0.468 6.468 22 O -0.286 6.286 23 C 0.006 3.994 24 C -0.209 4.209 25 C -0.002 4.002 26 C -0.156 4.156 27 H 0.212 0.788 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.539 0.375 10.829 11.748 hybrid contribution -1.060 0.736 -0.529 1.395 sum -5.599 1.111 10.301 11.776 Atomic orbital electron populations 1.24165 0.95222 1.04309 1.05143 1.23325 0.94441 0.96696 0.96481 1.18380 0.83880 0.86663 1.00107 1.55018 1.72036 1.14000 1.20571 1.20109 1.30327 0.93867 0.94504 0.85823 1.25586 0.94998 0.98582 0.99179 1.70188 1.20395 1.36144 1.18801 0.85928 0.79705 0.80293 0.78676 1.19287 1.20688 1.19281 1.14225 0.80688 0.73437 0.74246 1.93345 1.66023 1.52630 1.85009 1.93350 1.80714 1.38988 1.85613 1.31162 1.30079 1.04797 1.06372 1.21555 0.95429 0.95264 1.01811 1.21682 0.98046 1.03337 0.75674 1.47003 1.58272 1.20368 1.07067 1.17995 0.78474 0.82517 0.80693 1.90966 1.46901 1.33382 1.75553 1.86220 1.76068 1.48506 1.17850 1.22907 0.99287 0.87601 0.89557 1.21819 1.03200 1.03019 0.92883 1.21644 0.92882 0.87822 0.97900 1.21621 0.97588 1.02732 0.93616 0.78781 0.87009 0.90159 0.91194 0.86816 0.87662 0.90937 0.91107 0.88837 0.91245 0.91363 0.90142 0.91571 0.91435 0.89309 0.91146 0.90747 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.06 19.20 29.55 0.57 -4.49 16 2 C -0.11 -2.17 11.04 -37.12 -0.41 -2.58 16 3 C 0.24 4.92 5.46 -6.83 -0.04 4.88 16 4 N -0.79 -17.57 2.37 -62.78 -0.15 -17.71 16 5 C -0.24 -5.53 8.43 -15.06 -0.13 -5.65 16 6 H 0.12 2.90 7.03 -52.49 -0.37 2.53 16 7 C 0.03 0.65 4.94 -17.43 -0.09 0.56 16 8 N -0.82 -18.17 8.79 55.49 0.49 -17.68 16 9 Si 0.93 17.91 29.62 -169.99 -5.03 12.87 16 10 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 11 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 12 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 13 S 2.48 53.66 4.82 -107.50 -0.52 53.14 16 14 O -0.98 -23.91 16.60 -57.54 -0.96 -24.87 16 15 O -1.00 -23.34 16.69 -57.54 -0.96 -24.31 16 16 C -0.63 -11.20 2.83 -26.53 -0.08 -11.28 16 17 C -0.10 -1.84 5.14 -26.45 -0.14 -1.97 16 18 C 0.13 2.18 6.42 -3.71 -0.02 2.16 16 19 N -0.59 -9.32 2.97 -178.56 -0.53 -9.85 16 20 C 0.65 10.80 8.43 54.06 0.46 11.25 16 21 O -0.58 -11.04 15.54 -19.28 -0.30 -11.34 16 22 O -0.37 -5.22 8.86 -40.31 -0.36 -5.57 16 23 C 0.08 0.88 6.19 37.16 0.23 1.12 16 24 C -0.15 -1.14 10.29 37.16 0.38 -0.76 16 25 C 0.12 1.67 6.45 -3.71 -0.02 1.65 16 26 C -0.12 -1.83 5.37 -26.61 -0.14 -1.98 16 27 H 0.20 3.03 7.80 -54.08 -0.42 2.60 16 28 H 0.11 2.39 6.57 -51.93 -0.34 2.05 16 29 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 30 H 0.28 5.94 8.31 -40.82 -0.34 5.60 16 31 H 0.11 1.95 8.14 -51.92 -0.42 1.53 16 32 H 0.11 2.06 6.94 -51.93 -0.36 1.69 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.58 7.00 -51.93 -0.36 1.22 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.09 6.93 -51.93 -0.36 0.73 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -29.36 374.84 -8.45 -37.81 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.36 Total: 8.95 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 0.57 Total: -7.10 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.19 Total: -45.24 kcal Atomic # 8 Polarization: -63.52 SS G_CDS: -2.57 Total: -66.09 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 53.66 SS G_CDS: -0.52 Total: 53.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.36 -8.45 -37.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281474936.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.258 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds