Wall clock time and date at job start Wed Apr 1 2020 02:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46490 * 109.47276 * 209.70863 * 3 2 1 5 5 C 1.36943 * 120.00030 * 274.99948 * 4 3 2 6 6 H 1.07998 * 120.00409 * 187.46796 * 5 4 3 7 7 C 1.38815 * 119.99780 * 7.47109 * 5 4 3 8 8 N 1.31620 * 120.00080 * 24.38933 * 7 5 4 9 9 Si 1.86797 * 120.00070 * 204.39430 * 7 5 4 10 10 H 1.48501 * 109.47195 * 59.99703 * 9 7 5 11 11 H 1.48497 * 109.47409 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46776 * 299.99683 * 9 7 5 13 13 S 1.65604 * 120.00394 * 94.99643 * 4 3 2 14 14 O 1.42099 * 104.27674 * 159.92676 * 13 4 3 15 15 O 1.42098 * 104.27028 * 32.07181 * 13 4 3 16 16 C 1.81395 * 104.44884 * 276.00032 * 13 4 3 17 17 C 1.53358 * 109.41934 * 305.12190 * 16 13 4 18 18 C 1.53188 * 109.14910 * 178.67626 * 17 16 13 19 19 N 1.46925 * 108.89224 * 54.58001 * 18 17 16 20 20 C 1.34780 * 120.63171 * 126.29880 * 19 18 17 21 21 O 1.21509 * 119.99516 * 359.97438 * 20 19 18 22 22 O 1.34634 * 120.00219 * 179.97438 * 20 19 18 23 23 C 1.45199 * 116.99897 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.47090 * 180.02562 * 23 22 20 25 25 C 1.46927 * 118.74062 * 306.31989 * 19 18 17 26 26 C 1.53040 * 109.45626 * 185.00001 * 16 13 4 27 27 H 4.40640 * 5.51408 * 179.97438 * 4 1 2 28 28 H 1.09002 * 109.46992 * 89.70149 * 3 2 1 29 29 H 1.09004 * 109.47061 * 329.70720 * 3 2 1 30 30 H 0.96999 * 120.00112 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46344 * 65.02800 * 16 13 4 32 32 H 1.09002 * 109.67669 * 58.71303 * 17 16 13 33 33 H 1.08994 * 109.47299 * 298.51509 * 17 16 13 34 34 H 1.09005 * 109.58953 * 294.72700 * 18 17 16 35 35 H 1.08991 * 109.58823 * 174.44032 * 18 17 16 36 36 H 1.08998 * 109.47411 * 300.00288 * 23 22 20 37 37 H 1.09000 * 109.46929 * 60.00835 * 23 22 20 38 38 H 1.08996 * 109.47018 * 180.02562 * 24 23 22 39 39 H 1.08998 * 109.46969 * 300.00241 * 24 23 22 40 40 H 1.08998 * 109.47121 * 59.99741 * 24 23 22 41 41 H 1.09004 * 109.58839 * 173.40072 * 25 19 18 42 42 H 1.09000 * 109.58930 * 293.67661 * 25 19 18 43 43 H 1.08996 * 109.50480 * 61.43524 * 26 16 13 44 44 H 1.09001 * 109.52771 * 301.34710 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2004 0.6845 5 6 3.2641 2.3766 -0.0047 6 1 3.7353 3.2279 0.4641 7 6 2.7904 2.4748 -1.3058 8 7 1.8291 1.6760 -1.7183 9 14 3.5174 3.7406 -2.4714 10 1 4.9707 3.4839 -2.6371 11 1 2.8443 3.6422 -3.7914 12 1 3.3156 5.1015 -1.9126 13 16 3.5277 1.1346 2.2916 14 8 4.3747 2.2579 2.4912 15 8 4.0094 -0.1889 2.4802 16 6 1.9489 1.3664 3.1544 17 6 1.2889 2.6632 2.6701 18 6 -0.0586 2.8359 3.3780 19 7 0.1551 2.7715 4.8301 20 6 -0.2874 3.7589 5.6339 21 8 -0.8689 4.7142 5.1588 22 8 -0.0850 3.6866 6.9629 23 6 -0.5882 4.7860 7.7670 24 6 -0.2664 4.5291 9.2406 25 6 0.8608 1.6106 5.3896 26 6 2.1993 1.4496 4.6619 27 1 -1.0502 -0.0002 -0.0003 28 1 3.0093 -0.0045 -1.0277 29 1 3.0097 -0.8866 0.5184 30 1 1.4984 1.7443 -2.6276 31 1 1.2915 0.5236 2.9414 32 1 1.1304 2.6142 1.5928 33 1 1.9345 3.5093 2.9053 34 1 -0.7366 2.0388 3.0728 35 1 -0.4886 3.8021 3.1144 36 1 -0.1153 5.7151 7.4488 37 1 -1.6677 4.8653 7.6391 38 1 -0.6445 5.3542 9.8442 39 1 -0.7390 3.6000 9.5591 40 1 0.8132 4.4499 9.3683 41 1 1.0398 1.7694 6.4530 42 1 0.2568 0.7140 5.2507 43 1 2.8364 2.3070 4.8782 44 1 2.6899 0.5371 5.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281474936.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:32 Heat of formation + Delta-G solvation = -96.068896 kcal Electronic energy + Delta-G solvation = -29683.687746 eV Core-core repulsion = 25537.190258 eV Total energy + Delta-G solvation = -4146.497488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.75429 -39.30766 -38.06470 -37.73355 -37.46872 -36.52932 -34.25394 -33.64659 -32.84634 -32.52985 -32.02412 -28.25780 -26.96928 -25.62145 -24.65434 -23.96323 -22.66136 -21.10543 -20.17154 -19.61836 -19.21156 -18.65430 -18.19863 -18.03101 -17.76399 -17.22993 -16.50698 -16.21501 -15.97757 -15.72032 -15.35706 -15.15620 -15.05342 -14.76784 -14.55272 -14.25629 -14.13004 -13.69482 -13.64576 -13.50259 -13.32899 -13.08360 -12.92877 -12.77201 -12.68164 -12.58944 -12.53344 -12.39915 -12.22210 -12.02600 -12.00021 -11.86346 -11.64287 -11.55044 -11.39225 -11.05172 -10.81995 -10.44211 -10.03525 -9.81287 -8.25061 -5.72650 -0.28384 1.04144 1.50733 1.55158 1.61684 1.63164 1.95646 2.39076 2.56847 2.76362 2.79004 2.93758 3.31133 3.43104 3.59757 3.83246 3.96177 4.01366 4.02273 4.08602 4.13242 4.24855 4.33312 4.39909 4.49833 4.56566 4.63087 4.64535 4.68723 4.77937 4.87951 4.92798 4.98583 5.03780 5.11977 5.16511 5.32542 5.36387 5.38312 5.51455 5.62090 6.20815 6.43985 6.85237 7.11048 7.27025 7.34577 8.63718 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.003657 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.085704 B = 7654.667154 C = 8089.842168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.141 4.141 3 C 0.239 3.761 4 N -0.814 5.814 5 C -0.279 4.279 6 H 0.107 0.893 7 C 0.008 3.992 8 N -0.835 5.835 9 Si 0.974 3.026 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.272 1.272 13 S 2.503 3.497 14 O -1.009 7.009 15 O -1.012 7.012 16 C -0.604 4.604 17 C -0.096 4.096 18 C 0.141 3.859 19 N -0.589 5.589 20 C 0.646 3.354 21 O -0.609 6.609 22 O -0.369 6.369 23 C 0.071 3.929 24 C -0.143 4.143 25 C 0.124 3.876 26 C -0.122 4.122 27 H 0.227 0.773 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.275 0.725 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.637 -0.412 12.554 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.144 4.144 3 C 0.113 3.887 4 N -0.637 5.637 5 C -0.423 4.423 6 H 0.124 0.876 7 C -0.202 4.202 8 N -0.473 5.473 9 Si 0.798 3.202 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.197 1.197 13 S 2.606 3.394 14 O -0.999 6.999 15 O -1.002 7.002 16 C -0.709 4.709 17 C -0.135 4.135 18 C 0.019 3.981 19 N -0.329 5.329 20 C 0.401 3.599 21 O -0.502 6.502 22 O -0.282 6.282 23 C -0.003 4.003 24 C -0.200 4.200 25 C 0.002 3.998 26 C -0.162 4.162 27 H 0.243 0.757 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.011 -0.373 12.905 14.241 hybrid contribution -0.606 0.916 -0.911 1.428 sum -6.618 0.543 11.993 13.709 Atomic orbital electron populations 1.24893 0.95968 1.02584 1.03357 1.23354 0.94689 0.98241 0.98105 1.18242 0.84819 0.86172 0.99454 1.54433 1.74159 1.14256 1.20823 1.19852 1.33125 0.93547 0.95746 0.87568 1.25955 0.95053 0.99811 0.99418 1.70248 1.20993 1.37332 1.18734 0.85268 0.78733 0.78642 0.77528 1.19888 1.20137 1.19670 1.11906 0.80812 0.72438 0.74288 1.93333 1.67348 1.53593 1.85625 1.93348 1.81452 1.39394 1.86036 1.30802 1.26520 1.05705 1.07833 1.21455 0.96405 0.94435 1.01248 1.21550 0.96744 1.03681 0.76117 1.47077 1.58249 1.20822 1.06777 1.18153 0.78111 0.82082 0.81530 1.90944 1.48325 1.34591 1.76300 1.86238 1.75908 1.49594 1.16509 1.23262 0.99350 0.86715 0.90948 1.21835 1.03401 1.04339 0.90444 1.21796 0.91546 0.87925 0.98570 1.21752 0.99230 1.03566 0.91615 0.75683 0.88274 0.89688 0.91395 0.84882 0.89166 0.92662 0.89133 0.89718 0.91891 0.91233 0.87762 0.90939 0.91407 0.87216 0.88693 0.91678 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -8.87 19.20 74.32 1.43 -7.44 16 2 C -0.14 -5.66 11.04 31.13 0.34 -5.32 16 3 C 0.24 10.11 5.46 84.58 0.46 10.57 16 4 N -0.81 -36.69 2.37 -352.52 -0.84 -37.52 16 5 C -0.28 -13.32 8.43 84.03 0.71 -12.62 16 6 H 0.11 5.27 7.03 -2.91 -0.02 5.25 16 7 C 0.01 0.35 4.94 84.86 0.42 0.76 16 8 N -0.84 -37.83 8.79 21.65 0.19 -37.64 16 9 Si 0.97 37.76 29.62 68.60 2.03 39.79 16 10 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 11 H -0.28 -10.36 7.11 99.48 0.71 -9.65 16 12 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 13 S 2.50 108.12 4.82 -56.49 -0.27 107.84 16 14 O -1.01 -49.94 16.60 -127.65 -2.12 -52.06 16 15 O -1.01 -46.59 16.69 -127.65 -2.13 -48.72 16 16 C -0.60 -20.52 2.83 30.73 0.09 -20.44 16 17 C -0.10 -3.41 5.14 30.78 0.16 -3.25 16 18 C 0.14 4.35 6.42 86.36 0.55 4.90 16 19 N -0.59 -17.25 2.97 -949.25 -2.82 -20.07 16 20 C 0.65 20.36 8.43 129.79 1.09 21.45 16 21 O -0.61 -22.78 15.54 19.81 0.31 -22.47 16 22 O -0.37 -9.49 8.86 -55.43 -0.49 -9.98 16 23 C 0.07 1.42 6.19 71.98 0.45 1.87 16 24 C -0.14 -1.75 10.29 71.98 0.74 -1.00 16 25 C 0.12 2.96 6.45 86.36 0.56 3.52 16 26 C -0.12 -3.50 5.37 30.67 0.16 -3.34 16 27 H 0.23 6.25 7.80 -4.41 -0.03 6.22 16 28 H 0.10 4.40 6.57 -2.39 -0.02 4.38 16 29 H 0.09 3.39 6.92 -2.38 -0.02 3.38 16 30 H 0.28 11.99 8.31 -92.71 -0.77 11.22 16 31 H 0.13 4.15 8.14 -2.39 -0.02 4.13 16 32 H 0.09 3.54 6.94 -2.39 -0.02 3.52 16 33 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.08 2.80 7.00 -2.39 -0.02 2.78 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 2.24 6.93 -2.39 -0.02 2.22 16 42 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -63.66 374.84 2.02 -61.64 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 1.00 Total: 29.52 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 7.16 Total: -10.33 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -3.47 Total: -95.23 kcal Atomic # 8 Polarization: -128.80 SS G_CDS: -4.43 Total: -133.23 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Atomic # 16 Polarization: 108.12 SS G_CDS: -0.27 Total: 107.84 kcal Total: -63.66 2.02 -61.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281474936.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.432 kcal (2) G-P(sol) polarization free energy of solvation -63.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds