Wall clock time and date at job start Wed Apr 1 2020 02:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00190 * 2 1 4 4 C 1.52999 * 109.47337 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47313 * 66.25762 * 4 3 2 6 6 C 1.46499 * 119.99895 * 274.31731 * 5 4 3 7 7 C 1.50707 * 109.46983 * 280.61099 * 6 5 4 8 8 H 1.08003 * 119.99891 * 3.97856 * 7 6 5 9 9 C 1.37879 * 120.00105 * 183.97445 * 7 6 5 10 10 N 1.31509 * 119.99731 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99786 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47199 * 90.00050 * 11 9 7 13 13 H 1.48504 * 109.46687 * 209.99793 * 11 9 7 14 14 H 1.48493 * 109.47255 * 329.99741 * 11 9 7 15 15 S 1.65598 * 119.99800 * 94.30936 * 5 4 3 16 16 O 1.42097 * 106.40343 * 330.08028 * 15 5 4 17 17 O 1.42095 * 106.40085 * 197.15932 * 15 5 4 18 18 N 1.65601 * 107.21806 * 83.62144 * 15 5 4 19 19 C 1.46498 * 120.00087 * 64.13299 * 18 15 5 20 20 C 1.50700 * 109.47237 * 164.86858 * 19 18 15 21 21 C 1.38262 * 119.94595 * 90.00239 * 20 19 18 22 22 C 1.38146 * 120.05628 * 180.02562 * 21 20 19 23 23 C 1.38739 * 119.94352 * 359.97438 * 22 21 20 24 24 O 1.35891 * 120.05369 * 180.02562 * 23 22 21 25 25 C 1.38736 * 119.88609 * 0.28588 * 23 22 21 26 26 C 1.38148 * 119.94206 * 359.46224 * 25 23 22 27 27 H 1.09003 * 109.46382 * 299.99826 * 1 2 3 28 28 H 1.08998 * 109.47170 * 59.99206 * 1 2 3 29 29 H 1.08999 * 109.47320 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47205 * 60.00621 * 3 2 1 31 31 H 1.09000 * 109.47439 * 300.00423 * 3 2 1 32 32 H 1.09004 * 109.47120 * 306.25833 * 4 3 2 33 33 H 1.08995 * 109.47725 * 186.26297 * 4 3 2 34 34 H 1.08998 * 109.47703 * 40.61192 * 6 5 4 35 35 H 1.09002 * 109.46935 * 160.61770 * 6 5 4 36 36 H 0.97000 * 119.99690 * 179.97438 * 10 9 7 37 37 H 0.97002 * 120.00198 * 244.14068 * 18 15 5 38 38 H 1.09005 * 109.47348 * 44.86313 * 19 18 15 39 39 H 1.08999 * 109.47547 * 284.86830 * 19 18 15 40 40 H 1.08000 * 119.97171 * 0.02562 * 21 20 19 41 41 H 1.07997 * 120.03159 * 179.97438 * 22 21 20 42 42 H 0.96709 * 113.99761 * 90.00694 * 24 23 22 43 43 H 1.08002 * 120.02619 * 179.72011 * 25 23 22 44 44 H 1.08006 * 119.96886 * 180.23690 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9779 0.5919 -1.2653 6 6 4.0171 -0.8646 -1.4174 7 6 5.2596 -1.4054 -0.7578 8 1 5.9177 -0.7402 -0.2184 9 6 5.5561 -2.7492 -0.8427 10 7 6.6400 -3.2211 -0.2666 11 14 4.4180 -3.8995 -1.7760 12 1 4.8424 -3.9701 -3.1973 13 1 4.4811 -5.2551 -1.1727 14 1 3.0260 -3.3881 -1.6998 15 16 4.4335 1.5684 -2.5227 16 8 3.6788 2.7656 -2.3949 17 8 4.4122 0.7569 -3.6890 18 7 6.0166 1.9846 -2.2715 19 6 7.0563 0.9526 -2.2854 20 6 8.4096 1.6045 -2.4072 21 6 9.1069 1.9651 -1.2691 22 6 10.3473 2.5633 -1.3780 23 6 10.8935 2.8018 -2.6309 24 8 12.1137 3.3897 -2.7407 25 6 10.1893 2.4440 -3.7715 26 6 8.9516 1.8413 -3.6570 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6888 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8501 0.5499 0.8278 33 1 3.9785 2.1741 0.1115 34 1 3.1365 -1.3029 -0.9480 35 1 4.0285 -1.1190 -2.4773 36 1 6.8484 -4.1666 -0.3260 37 1 6.2555 2.9116 -2.1150 38 1 6.8961 0.2867 -3.1335 39 1 7.0114 0.3790 -1.3597 40 1 8.6815 1.7789 -0.2940 41 1 10.8915 2.8452 -0.4888 42 1 12.8515 2.7646 -2.7563 43 1 10.6104 2.6327 -4.7480 44 1 8.4047 1.5590 -4.5445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282588775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:33 Heat of formation + Delta-G solvation = -133.761348 kcal Electronic energy + Delta-G solvation = -28999.018590 eV Core-core repulsion = 24850.886634 eV Total energy + Delta-G solvation = -4148.131956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.74639 -37.82236 -37.20165 -36.70779 -35.49549 -35.30041 -34.48043 -32.51241 -30.96683 -29.91320 -29.78533 -27.19362 -25.79606 -25.05784 -22.76929 -22.64748 -21.63923 -21.36105 -18.89304 -18.44268 -17.51568 -17.11948 -16.83734 -16.19337 -15.91493 -15.82806 -15.65803 -15.41070 -14.99433 -14.76844 -14.43193 -14.11562 -13.76076 -13.58620 -13.46123 -12.96482 -12.58835 -12.47112 -12.26163 -12.22618 -12.06853 -11.93093 -11.84993 -11.79149 -11.52070 -11.33664 -11.20384 -11.01817 -10.88067 -10.65003 -10.47571 -10.32642 -10.16893 -9.61148 -9.36844 -9.02481 -8.94299 -8.59774 -8.53752 -8.07649 -6.13045 -4.11895 1.02219 1.36923 1.38911 3.30651 3.37002 3.41090 3.45037 3.70929 4.08362 4.09913 4.19303 4.40889 4.84232 4.90583 4.98094 5.08023 5.20651 5.30033 5.36388 5.45035 5.48116 5.50083 5.59214 5.63930 5.71910 5.74019 5.84156 5.87582 5.96524 6.12423 6.25021 6.32839 6.41351 6.42056 6.51052 6.75063 6.83692 7.04109 7.18959 7.30634 7.45264 7.51716 7.56625 7.64402 8.43974 8.87630 9.49359 10.98684 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.003985 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.672486 B = 7024.253647 C = 8459.241648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.042 3.958 4 C 0.137 3.863 5 N -0.980 5.980 6 C 0.212 3.788 7 C -0.538 4.538 8 H 0.081 0.919 9 C 0.078 3.922 10 N -0.895 5.895 11 Si 0.866 3.134 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.261 1.261 15 S 2.784 3.216 16 O -1.000 7.000 17 O -0.980 6.980 18 N -1.126 6.126 19 C 0.156 3.844 20 C -0.092 4.092 21 C -0.083 4.083 22 C -0.148 4.148 23 C 0.099 3.901 24 O -0.503 6.503 25 C -0.149 4.149 26 C -0.088 4.088 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.041 0.959 36 H 0.264 0.736 37 H 0.408 0.592 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.388 0.612 43 H 0.126 0.874 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 10.527 -0.872 10.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.037 4.037 4 C 0.010 3.990 5 N -0.820 5.820 6 C 0.089 3.911 7 C -0.576 4.576 8 H 0.099 0.901 9 C -0.125 4.125 10 N -0.533 5.533 11 Si 0.693 3.307 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.185 1.185 15 S 2.792 3.208 16 O -0.984 6.984 17 O -0.963 6.963 18 N -0.885 5.885 19 C 0.031 3.969 20 C -0.094 4.094 21 C -0.101 4.101 22 C -0.166 4.166 23 C 0.055 3.945 24 O -0.313 6.313 25 C -0.168 4.168 26 C -0.107 4.107 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.240 0.760 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.244 0.756 43 H 0.144 0.856 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.057 10.746 -1.631 10.920 hybrid contribution 0.047 -0.660 -0.010 0.662 sum 1.103 10.086 -1.641 10.278 Atomic orbital electron populations 1.22708 0.82308 1.02363 0.99314 1.88058 1.18507 1.27399 1.95210 1.23145 0.95371 0.85011 1.00155 1.21084 0.91198 0.98248 0.88495 1.57422 1.78992 1.18491 1.27086 1.19688 0.99067 0.74462 0.97910 1.21425 1.07289 0.94172 1.34755 0.90076 1.24796 0.94813 0.97986 0.94917 1.69882 1.25040 1.14409 1.43928 0.86987 0.82581 0.80537 0.80626 1.19903 1.21263 1.18513 1.01772 0.72670 0.72380 0.73960 1.93552 1.69265 1.47987 1.87563 1.93565 1.86484 1.69754 1.46537 1.56014 1.25472 1.16305 1.90690 1.20381 0.82491 0.88490 1.05551 1.20062 0.96726 0.99509 0.93101 1.21083 0.93767 0.96364 0.98927 1.21401 0.97232 1.00990 0.97013 1.18497 0.87102 0.96506 0.92434 1.84805 1.14242 1.36192 1.96055 1.21377 0.96392 1.00679 0.98331 1.21084 0.94774 0.97183 0.97632 0.94596 0.94555 0.89967 0.92995 0.92961 0.88629 0.90195 0.93017 0.94116 0.92607 0.76012 0.89549 0.87889 0.84976 0.85512 0.75620 0.85598 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.42 9.10 -35.23 -0.32 -6.74 16 3 C 0.04 0.64 6.28 37.16 0.23 0.88 16 4 C 0.14 2.23 5.72 -4.04 -0.02 2.21 16 5 N -0.98 -18.93 2.83 -115.66 -0.33 -19.26 16 6 C 0.21 4.85 4.41 -5.19 -0.02 4.83 16 7 C -0.54 -13.53 9.07 -34.44 -0.31 -13.84 16 8 H 0.08 2.10 6.69 -52.48 -0.35 1.75 16 9 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.89 -25.26 13.96 55.43 0.77 -24.49 16 11 Si 0.87 20.77 27.39 -169.99 -4.66 16.12 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.26 -6.10 6.66 56.52 0.38 -5.73 16 15 S 2.78 52.04 6.06 -107.50 -0.65 51.39 16 16 O -1.00 -19.11 17.10 -57.17 -0.98 -20.08 16 17 O -0.98 -21.52 16.04 -57.17 -0.92 -22.44 16 18 N -1.13 -17.60 6.05 -11.66 -0.07 -17.67 16 19 C 0.16 2.59 6.31 -5.19 -0.03 2.56 16 20 C -0.09 -1.34 5.28 -104.60 -0.55 -1.89 16 21 C -0.08 -1.10 9.69 -39.61 -0.38 -1.49 16 22 C -0.15 -1.81 9.99 -39.43 -0.39 -2.20 16 23 C 0.10 1.20 6.70 -39.21 -0.26 0.94 16 24 O -0.50 -5.31 13.50 -19.40 -0.26 -5.57 16 25 C -0.15 -1.82 9.99 -39.43 -0.39 -2.21 16 26 C -0.09 -1.17 9.69 -39.61 -0.38 -1.56 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.83 7.88 -51.93 -0.41 0.42 16 32 H 0.10 1.62 8.07 -51.93 -0.42 1.20 16 33 H 0.08 1.08 7.81 -51.93 -0.41 0.68 16 34 H 0.05 1.22 5.99 -51.93 -0.31 0.91 16 35 H 0.04 0.99 5.97 -51.93 -0.31 0.68 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.41 5.38 8.65 -34.47 -0.30 5.08 16 38 H 0.09 1.56 7.71 -51.93 -0.40 1.16 16 39 H 0.10 1.91 5.85 -51.93 -0.30 1.61 16 40 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.39 2.24 9.06 45.56 0.41 2.65 16 43 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 44 H 0.13 1.61 8.06 -52.48 -0.42 1.18 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -33.21 379.29 -8.54 -41.75 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.34 Total: 9.55 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -1.51 Total: -8.28 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.38 Total: -61.42 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -2.48 Total: -54.83 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.66 Total: 16.12 kcal Atomic # 16 Polarization: 52.04 SS G_CDS: -0.65 Total: 51.39 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.21 -8.54 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282588775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.011 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds