Wall clock time and date at job start Wed Apr 1 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00190 * 2 1 4 4 C 1.52999 * 109.47337 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47313 * 66.25762 * 4 3 2 6 6 C 1.46499 * 119.99895 * 274.31731 * 5 4 3 7 7 C 1.50707 * 109.46983 * 280.61099 * 6 5 4 8 8 H 1.08003 * 119.99891 * 3.97856 * 7 6 5 9 9 C 1.37879 * 120.00105 * 183.97445 * 7 6 5 10 10 N 1.31509 * 119.99731 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99786 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47199 * 90.00050 * 11 9 7 13 13 H 1.48504 * 109.46687 * 209.99793 * 11 9 7 14 14 H 1.48493 * 109.47255 * 329.99741 * 11 9 7 15 15 S 1.65598 * 119.99800 * 94.30936 * 5 4 3 16 16 O 1.42097 * 106.40343 * 330.08028 * 15 5 4 17 17 O 1.42095 * 106.40085 * 197.15932 * 15 5 4 18 18 N 1.65601 * 107.21806 * 83.62144 * 15 5 4 19 19 C 1.46498 * 120.00087 * 64.13299 * 18 15 5 20 20 C 1.50700 * 109.47237 * 164.86858 * 19 18 15 21 21 C 1.38262 * 119.94595 * 90.00239 * 20 19 18 22 22 C 1.38146 * 120.05628 * 180.02562 * 21 20 19 23 23 C 1.38739 * 119.94352 * 359.97438 * 22 21 20 24 24 O 1.35891 * 120.05369 * 180.02562 * 23 22 21 25 25 C 1.38736 * 119.88609 * 0.28588 * 23 22 21 26 26 C 1.38148 * 119.94206 * 359.46224 * 25 23 22 27 27 H 1.09003 * 109.46382 * 299.99826 * 1 2 3 28 28 H 1.08998 * 109.47170 * 59.99206 * 1 2 3 29 29 H 1.08999 * 109.47320 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47205 * 60.00621 * 3 2 1 31 31 H 1.09000 * 109.47439 * 300.00423 * 3 2 1 32 32 H 1.09004 * 109.47120 * 306.25833 * 4 3 2 33 33 H 1.08995 * 109.47725 * 186.26297 * 4 3 2 34 34 H 1.08998 * 109.47703 * 40.61192 * 6 5 4 35 35 H 1.09002 * 109.46935 * 160.61770 * 6 5 4 36 36 H 0.97000 * 119.99690 * 179.97438 * 10 9 7 37 37 H 0.97002 * 120.00198 * 244.14068 * 18 15 5 38 38 H 1.09005 * 109.47348 * 44.86313 * 19 18 15 39 39 H 1.08999 * 109.47547 * 284.86830 * 19 18 15 40 40 H 1.08000 * 119.97171 * 0.02562 * 21 20 19 41 41 H 1.07997 * 120.03159 * 179.97438 * 22 21 20 42 42 H 0.96709 * 113.99761 * 90.00694 * 24 23 22 43 43 H 1.08002 * 120.02619 * 179.72011 * 25 23 22 44 44 H 1.08006 * 119.96886 * 180.23690 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9779 0.5919 -1.2653 6 6 4.0171 -0.8646 -1.4174 7 6 5.2596 -1.4054 -0.7578 8 1 5.9177 -0.7402 -0.2184 9 6 5.5561 -2.7492 -0.8427 10 7 6.6400 -3.2211 -0.2666 11 14 4.4180 -3.8995 -1.7760 12 1 4.8424 -3.9701 -3.1973 13 1 4.4811 -5.2551 -1.1727 14 1 3.0260 -3.3881 -1.6998 15 16 4.4335 1.5684 -2.5227 16 8 3.6788 2.7656 -2.3949 17 8 4.4122 0.7569 -3.6890 18 7 6.0166 1.9846 -2.2715 19 6 7.0563 0.9526 -2.2854 20 6 8.4096 1.6045 -2.4072 21 6 9.1069 1.9651 -1.2691 22 6 10.3473 2.5633 -1.3780 23 6 10.8935 2.8018 -2.6309 24 8 12.1137 3.3897 -2.7407 25 6 10.1893 2.4440 -3.7715 26 6 8.9516 1.8413 -3.6570 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6888 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8501 0.5499 0.8278 33 1 3.9785 2.1741 0.1115 34 1 3.1365 -1.3029 -0.9480 35 1 4.0285 -1.1190 -2.4773 36 1 6.8484 -4.1666 -0.3260 37 1 6.2555 2.9116 -2.1150 38 1 6.8961 0.2867 -3.1335 39 1 7.0114 0.3790 -1.3597 40 1 8.6815 1.7789 -0.2940 41 1 10.8915 2.8452 -0.4888 42 1 12.8515 2.7646 -2.7563 43 1 10.6104 2.6327 -4.7480 44 1 8.4047 1.5590 -4.5445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282588775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:32 Heat of formation + Delta-G solvation = -160.672100 kcal Electronic energy + Delta-G solvation = -29000.185527 eV Core-core repulsion = 24850.886634 eV Total energy + Delta-G solvation = -4149.298893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.72024 -39.07528 -38.39025 -38.08292 -37.02343 -36.90186 -35.71996 -34.48004 -31.94826 -31.31713 -31.00989 -28.80924 -26.98721 -26.27070 -24.24160 -23.75116 -23.20851 -22.43706 -20.39142 -19.32505 -19.15139 -18.64904 -18.55177 -17.58455 -17.15114 -17.07940 -16.75863 -16.47925 -16.32161 -16.09328 -15.71403 -15.66647 -15.21975 -14.74166 -14.51731 -14.41178 -14.15604 -13.99555 -13.72820 -13.57739 -13.43407 -13.35561 -13.19549 -13.02330 -12.98361 -12.81954 -12.70067 -12.46598 -12.27007 -12.10048 -12.03236 -11.84993 -11.55990 -11.37545 -10.68311 -10.52925 -10.42787 -9.94194 -9.75101 -9.50544 -8.20607 -6.20638 -0.38130 0.24859 0.40210 1.39105 1.43251 1.52192 1.96755 2.41327 2.53612 2.74384 2.98094 3.16283 3.31509 3.41427 3.79732 3.90472 3.94863 4.08169 4.21251 4.34960 4.41325 4.44180 4.49862 4.54588 4.56981 4.60819 4.76295 4.81535 4.87485 4.91999 5.02736 5.05281 5.10291 5.24745 5.32365 5.44404 5.46309 5.55939 5.67268 5.80956 5.87778 6.16090 6.38369 6.40493 6.82383 6.86688 7.42507 8.93272 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.003985 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.672486 B = 7024.253647 C = 8459.241648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.041 3.959 4 C 0.127 3.873 5 N -0.984 5.984 6 C 0.224 3.776 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.031 3.969 10 N -0.932 5.932 11 Si 0.909 3.091 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.252 1.252 15 S 2.797 3.203 16 O -1.000 7.000 17 O -1.013 7.013 18 N -1.110 6.110 19 C 0.165 3.835 20 C -0.110 4.110 21 C -0.089 4.089 22 C -0.150 4.150 23 C 0.105 3.895 24 O -0.508 6.508 25 C -0.150 4.150 26 C -0.095 4.095 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.048 0.952 35 H 0.028 0.972 36 H 0.264 0.736 37 H 0.421 0.579 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.134 0.866 41 H 0.146 0.854 42 H 0.411 0.589 43 H 0.146 0.854 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 12.025 -0.792 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C -0.037 4.037 4 C 0.001 3.999 5 N -0.824 5.824 6 C 0.099 3.901 7 C -0.561 4.561 8 H 0.085 0.915 9 C -0.169 4.169 10 N -0.572 5.572 11 Si 0.735 3.265 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.176 1.176 15 S 2.806 3.194 16 O -0.984 6.984 17 O -0.997 6.997 18 N -0.872 5.872 19 C 0.040 3.960 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.168 4.168 23 C 0.061 3.939 24 O -0.321 6.321 25 C -0.169 4.169 26 C -0.114 4.114 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.256 0.744 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.152 0.848 41 H 0.163 0.837 42 H 0.270 0.730 43 H 0.164 0.836 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.162 12.271 -1.541 12.422 hybrid contribution 0.097 -1.005 -0.006 1.009 sum 1.259 11.266 -1.547 11.441 Atomic orbital electron populations 1.22900 0.80381 1.03275 1.00707 1.87997 1.20791 1.28510 1.95492 1.23188 0.94303 0.84772 1.01451 1.21385 0.92549 0.99251 0.86692 1.57345 1.79563 1.16987 1.28462 1.19334 0.97544 0.76592 0.96588 1.21609 1.07440 0.93763 1.33320 0.91466 1.25411 0.95952 0.99546 0.95971 1.69979 1.26685 1.14667 1.45873 0.86279 0.81596 0.79205 0.79453 1.20021 1.20858 1.17562 1.01250 0.73037 0.71880 0.73283 1.93543 1.69774 1.47624 1.87492 1.93521 1.87147 1.70710 1.48321 1.55680 1.24245 1.17002 1.90259 1.20128 0.84116 0.88445 1.03350 1.19899 0.95911 1.01142 0.94236 1.21145 0.94343 0.96616 0.98628 1.21594 0.96732 1.00506 0.98003 1.18586 0.87715 0.95342 0.92287 1.84748 1.14349 1.37095 1.95939 1.21576 0.95760 1.00074 0.99472 1.21176 0.95483 0.97487 0.97272 0.92306 0.93988 0.89430 0.89648 0.93534 0.89551 0.87327 0.93438 0.95401 0.92682 0.74361 0.91525 0.90179 0.84812 0.83653 0.72961 0.83604 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -13.57 9.10 -148.98 -1.36 -14.92 16 3 C 0.04 1.19 6.28 71.98 0.45 1.64 16 4 C 0.13 4.01 5.72 86.38 0.49 4.51 16 5 N -0.98 -37.85 2.83 -519.83 -1.47 -39.32 16 6 C 0.22 10.33 4.41 85.64 0.38 10.70 16 7 C -0.52 -26.76 9.07 25.60 0.23 -26.53 16 8 H 0.07 3.58 6.69 -2.91 -0.02 3.57 16 9 C 0.03 1.66 5.47 84.66 0.46 2.12 16 10 N -0.93 -53.68 13.96 21.45 0.30 -53.38 16 11 Si 0.91 42.98 27.39 68.60 1.88 44.86 16 12 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.25 -11.43 6.66 99.48 0.66 -10.77 16 15 S 2.80 103.82 6.06 -56.49 -0.34 103.48 16 16 O -1.00 -36.96 17.10 -128.00 -2.19 -39.15 16 17 O -1.01 -44.96 16.04 -128.00 -2.05 -47.02 16 18 N -1.11 -34.51 6.05 -190.79 -1.15 -35.67 16 19 C 0.17 5.62 6.31 85.63 0.54 6.16 16 20 C -0.11 -3.18 5.28 -19.85 -0.10 -3.28 16 21 C -0.09 -2.30 9.69 22.25 0.22 -2.09 16 22 C -0.15 -3.39 9.99 22.37 0.22 -3.17 16 23 C 0.11 2.32 6.70 22.51 0.15 2.47 16 24 O -0.51 -9.22 13.50 -92.32 -1.25 -10.47 16 25 C -0.15 -3.38 9.99 22.37 0.22 -3.16 16 26 C -0.10 -2.48 9.69 22.25 0.22 -2.27 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.39 7.88 -2.39 -0.02 1.38 16 32 H 0.09 2.89 8.07 -2.38 -0.02 2.87 16 33 H 0.11 2.74 7.81 -2.39 -0.02 2.73 16 34 H 0.05 2.25 5.99 -2.39 -0.01 2.23 16 35 H 0.03 1.37 5.97 -2.39 -0.01 1.35 16 36 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.42 10.74 8.65 -96.74 -0.84 9.90 16 38 H 0.07 2.51 7.71 -2.38 -0.02 2.49 16 39 H 0.08 3.10 5.85 -2.39 -0.01 3.09 16 40 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 41 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.41 3.45 9.06 -74.05 -0.67 2.78 16 43 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 44 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -70.80 379.29 -3.41 -74.21 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -0.51 Total: 28.43 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 4.73 Total: -11.06 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -2.33 Total: -128.37 kcal Atomic # 8 Polarization: -104.71 SS G_CDS: -6.84 Total: -111.56 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Atomic # 16 Polarization: 103.82 SS G_CDS: -0.34 Total: 103.48 kcal Total: -70.80 -3.41 -74.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282588775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.460 kcal (2) G-P(sol) polarization free energy of solvation -70.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds