Wall clock time and date at job start Wed Apr 1 2020 02:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00218 * 2 1 4 4 H 1.08999 * 109.46856 * 29.99611 * 3 2 1 5 5 C 1.53002 * 109.46832 * 269.99915 * 3 2 1 6 6 C 1.53001 * 109.47237 * 149.99492 * 3 2 1 7 7 S 1.81397 * 109.47301 * 300.00109 * 6 3 2 8 8 O 1.42095 * 110.54225 * 68.37541 * 7 6 3 9 9 O 1.42101 * 110.54257 * 291.62220 * 7 6 3 10 10 N 1.65602 * 104.44635 * 180.02562 * 7 6 3 11 11 C 1.39247 * 120.00219 * 65.00203 * 10 7 6 12 12 N 1.32294 * 119.73132 * 0.26370 * 11 10 7 13 13 C 1.32027 * 121.67341 * 180.31225 * 12 11 10 14 14 C 1.38004 * 120.95290 * 359.70532 * 13 12 11 15 15 C 1.38852 * 119.37259 * 0.02562 * 14 13 12 16 16 C 1.38703 * 118.45415 * 359.97438 * 15 14 13 17 17 O 1.36014 * 120.49353 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99807 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00305 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99832 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46901 * 89.99815 * 24 22 20 26 26 H 1.48488 * 109.47487 * 210.00255 * 24 22 20 27 27 H 1.48503 * 109.47026 * 330.00635 * 24 22 20 28 28 H 1.09001 * 109.47511 * 300.00257 * 1 2 3 29 29 H 1.09005 * 109.47295 * 60.00271 * 1 2 3 30 30 H 1.09004 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47152 * 299.99514 * 5 3 2 32 32 H 1.09000 * 109.47364 * 59.99908 * 5 3 2 33 33 H 1.09003 * 109.46544 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.47115 * 179.97438 * 6 3 2 35 35 H 1.08999 * 109.47101 * 60.00269 * 6 3 2 36 36 H 0.96999 * 119.99911 * 244.99856 * 10 7 6 37 37 H 1.08004 * 119.52200 * 179.72565 * 13 12 11 38 38 H 1.08008 * 120.31361 * 179.97438 * 14 13 12 39 39 H 1.07996 * 120.77338 * 180.02562 * 15 14 13 40 40 H 1.09000 * 109.47490 * 59.99654 * 18 17 16 41 41 H 1.09001 * 109.47232 * 299.99008 * 18 17 16 42 42 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 43 43 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 44 44 H 0.97002 * 120.00008 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7713 -1.4425 6 6 3.3588 1.2632 0.7214 7 16 3.1128 0.7109 2.4316 8 8 2.7174 -0.6536 2.4629 9 8 2.4090 1.6949 3.1770 10 7 4.6329 0.7115 3.0887 11 6 5.3271 1.9095 3.2363 12 7 4.7652 3.0448 2.8546 13 6 5.3909 4.2015 2.9713 14 6 6.6615 4.2706 3.5053 15 6 7.2884 3.1047 3.9245 16 6 6.6079 1.9035 3.7902 17 8 7.1830 0.7364 4.1868 18 6 8.4989 0.8161 4.7382 19 6 8.9759 -0.5855 5.1240 20 6 10.3639 -0.5016 5.7050 21 1 10.8567 0.4557 5.7900 22 6 11.0051 -1.6469 6.1269 23 7 12.2166 -1.5737 6.6334 24 14 10.1530 -3.3027 5.9791 25 1 10.4720 -3.9076 4.6609 26 1 10.6251 -4.2009 7.0632 27 1 8.6844 -3.1158 6.0955 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.8829 1.0774 -1.9563 32 1 1.2568 1.8013 -1.9564 33 1 2.6606 2.7672 -1.4425 34 1 3.8024 2.2589 0.7209 35 1 4.0241 0.5693 0.2076 36 1 5.0396 -0.1226 3.3708 37 1 4.9010 5.1069 2.6444 38 1 7.1639 5.2224 3.5956 39 1 8.2823 3.1325 4.3460 40 1 8.4839 1.4511 5.6240 41 1 9.1778 1.2404 3.9984 42 1 8.2970 -1.0095 5.8639 43 1 8.9908 -1.2208 4.2384 44 1 12.6675 -2.3795 6.9305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283988503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:45 Heat of formation + Delta-G solvation = -118.672306 kcal Electronic energy + Delta-G solvation = -28233.204683 eV Core-core repulsion = 24085.727037 eV Total energy + Delta-G solvation = -4147.477646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.78184 -38.83677 -38.12707 -37.07592 -36.00015 -35.41392 -33.47837 -33.31192 -31.84708 -30.85488 -29.10746 -28.22343 -26.91164 -25.69862 -23.47644 -23.06330 -22.07189 -20.76774 -19.57293 -18.63268 -17.95915 -17.80481 -17.35033 -16.81103 -16.59801 -16.09914 -15.85754 -15.57007 -15.43229 -15.11078 -14.90281 -14.28172 -14.26604 -14.14466 -13.64567 -13.28702 -13.16695 -12.93684 -12.77360 -12.63597 -12.44116 -12.30691 -12.12051 -12.09006 -11.97470 -11.92951 -11.65436 -11.31220 -11.29108 -10.99898 -10.88279 -10.38393 -10.20002 -10.08775 -9.95966 -9.81097 -9.50644 -9.43831 -8.69586 -7.94312 -6.20730 -4.22722 0.09140 1.07628 1.19097 2.37542 3.18642 3.23980 3.31239 3.34299 3.36649 3.54625 3.72629 3.92086 4.16026 4.23619 4.32763 4.45823 4.68877 4.69399 4.78713 4.91795 4.96057 4.97852 5.02605 5.13338 5.19574 5.23984 5.25853 5.38394 5.50509 5.55972 5.71932 5.73108 5.74870 6.00488 6.05013 6.28355 6.37654 6.53691 6.66981 6.92481 7.11047 7.47810 7.60097 7.72185 8.29666 8.78868 9.39083 10.91510 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.002829 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.648957 B = 9896.330856 C =11258.663970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.383 6.383 3 C 0.095 3.905 4 H 0.078 0.922 5 C -0.164 4.164 6 C -0.622 4.622 7 S 2.615 3.385 8 O -0.939 6.939 9 O -0.933 6.933 10 N -1.030 6.030 11 C 0.347 3.653 12 N -0.500 5.500 13 C 0.091 3.909 14 C -0.157 4.157 15 C -0.139 4.139 16 C 0.075 3.925 17 O -0.316 6.316 18 C 0.072 3.928 19 C -0.009 4.009 20 C -0.530 4.530 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.880 3.120 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.263 1.263 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.139 0.861 36 H 0.440 0.560 37 H 0.164 0.836 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.029 0.971 43 H 0.025 0.975 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.856 11.311 -14.989 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.302 6.302 3 C 0.036 3.964 4 H 0.096 0.904 5 C -0.223 4.223 6 C -0.751 4.751 7 S 2.707 3.293 8 O -0.929 6.929 9 O -0.923 6.923 10 N -0.780 5.780 11 C 0.113 3.887 12 N -0.217 5.217 13 C -0.065 4.065 14 C -0.179 4.179 15 C -0.166 4.166 16 C 0.021 3.979 17 O -0.228 6.228 18 C -0.002 4.002 19 C -0.047 4.047 20 C -0.567 4.567 21 H 0.093 0.907 22 C -0.129 4.129 23 N -0.533 5.533 24 Si 0.707 3.293 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.187 1.187 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.172 0.828 35 H 0.158 0.842 36 H 0.278 0.722 37 H 0.181 0.819 38 H 0.158 0.842 39 H 0.167 0.833 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.043 0.957 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.389 10.634 -14.849 28.126 hybrid contribution 1.345 -0.612 0.039 1.478 sum -20.044 10.021 -14.810 26.861 Atomic orbital electron populations 1.22931 0.80184 1.03719 1.00332 1.88052 1.20525 1.26497 1.95125 1.21709 0.91438 0.85873 0.97418 0.90375 1.22197 1.02836 1.02153 0.95106 1.30654 1.05518 1.14691 1.24282 1.05069 0.72573 0.74538 0.77073 1.93640 1.79149 1.33434 1.86704 1.93611 1.69620 1.62214 1.66820 1.53508 1.37513 1.12581 1.74397 1.17276 0.87579 0.85975 0.97920 1.67007 1.35473 0.97594 1.21642 1.22179 0.92336 0.93811 0.98136 1.21855 0.96374 0.98950 1.00685 1.21742 1.01670 0.91343 1.01832 1.19497 0.92460 0.87649 0.98264 1.86096 1.34067 1.26935 1.75704 1.23191 0.77846 1.02528 0.96617 1.19603 0.97278 0.90478 0.97304 1.20789 0.97892 0.95989 1.42061 0.90725 1.24928 0.94624 0.99246 0.94134 1.69884 1.12710 1.29378 1.41369 0.86766 0.80736 0.83657 0.78162 1.20010 1.21116 1.18693 0.93546 0.93506 0.88753 0.91212 0.91788 0.90985 0.82795 0.84239 0.72175 0.81906 0.84249 0.83326 0.92181 0.92206 0.95249 0.95711 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 101.05 1.09 1.29 16 2 O -0.38 -4.20 9.39 -41.98 -0.39 -4.59 16 3 C 0.10 0.88 2.77 -26.73 -0.07 0.80 16 4 H 0.08 0.63 7.79 -51.93 -0.40 0.23 16 5 C -0.16 -1.14 9.53 37.16 0.35 -0.79 16 6 C -0.62 -6.10 5.63 37.16 0.21 -5.89 16 7 S 2.61 35.07 4.89 -107.50 -0.53 34.54 16 8 O -0.94 -14.93 17.41 -61.89 -1.08 -16.01 16 9 O -0.93 -14.79 16.96 -57.54 -0.98 -15.77 16 10 N -1.03 -14.17 5.74 31.24 0.18 -13.99 16 11 C 0.35 4.99 7.25 -154.72 -1.12 3.87 16 12 N -0.50 -6.49 7.48 -12.29 -0.09 -6.58 16 13 C 0.09 0.94 11.17 -17.55 -0.20 0.74 16 14 C -0.16 -1.58 10.10 -39.44 -0.40 -1.98 16 15 C -0.14 -1.76 9.14 -39.18 -0.36 -2.12 16 16 C 0.07 1.12 6.72 -38.92 -0.26 0.86 16 17 O -0.32 -5.44 9.38 -19.79 -0.19 -5.63 16 18 C 0.07 1.34 4.70 37.16 0.17 1.51 16 19 C -0.01 -0.21 4.41 -27.88 -0.12 -0.33 16 20 C -0.53 -14.27 9.66 -34.44 -0.33 -14.60 16 21 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 22 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 23 N -0.90 -26.54 13.96 55.43 0.77 -25.76 16 24 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 28 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.05 0.27 7.87 -51.93 -0.41 -0.14 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.15 1.32 7.06 -51.92 -0.37 0.95 16 35 H 0.14 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.44 5.81 8.13 -34.47 -0.28 5.53 16 37 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 39 H 0.15 1.77 6.44 -52.49 -0.34 1.43 16 40 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 41 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 42 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 43 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -35.11 379.20 -8.70 -43.81 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.32 Total: 2.59 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.13 Total: -14.69 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.86 Total: -46.33 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -2.63 Total: -41.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 16 Polarization: 35.07 SS G_CDS: -0.53 Total: 34.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.11 -8.70 -43.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283988503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.861 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds