Wall clock time and date at job start Wed Apr 1 2020 02:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35668 * 117.00083 * 2 1 4 4 C 1.38798 * 119.65150 * 180.02562 * 3 2 1 5 5 C 1.38537 * 119.23470 * 179.97438 * 4 3 2 6 6 C 1.38573 * 118.55082 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.38141 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.47254 * 260.00035 * 7 6 5 9 9 S 1.65597 * 119.99942 * 165.00168 * 8 7 6 10 10 O 1.42101 * 104.27431 * 181.07413 * 9 8 7 11 11 O 1.42102 * 104.27493 * 308.92757 * 9 8 7 12 12 C 1.81389 * 104.45097 * 65.00174 * 9 8 7 13 13 C 1.53001 * 109.47229 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.46984 * 179.97438 * 13 12 9 15 15 C 1.50697 * 109.46690 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00464 * 359.97438 * 15 14 13 17 17 C 1.37887 * 119.99901 * 180.02562 * 15 14 13 18 18 N 1.31507 * 119.99697 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00064 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47115 * 59.99888 * 19 17 15 21 21 H 1.48499 * 109.47316 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47335 * 300.00426 * 19 17 15 23 23 C 1.38759 * 119.23675 * 359.97438 * 6 5 4 24 24 O 1.35673 * 119.64898 * 180.02562 * 23 6 5 25 25 C 1.42902 * 116.99979 * 179.97438 * 24 23 6 26 26 N 1.32324 * 119.64607 * 0.02562 * 3 2 1 27 27 H 1.08990 * 109.47450 * 60.00139 * 1 2 3 28 28 H 1.09003 * 109.46785 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47203 * 299.99525 * 1 2 3 30 30 H 1.07995 * 120.37927 * 359.97438 * 4 3 2 31 31 H 1.08004 * 120.72351 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.46916 * 20.00097 * 7 6 5 33 33 H 1.09003 * 109.46710 * 140.00467 * 7 6 5 34 34 H 0.97005 * 119.99302 * 345.00426 * 8 7 6 35 35 H 1.09001 * 109.47252 * 300.00111 * 12 9 8 36 36 H 1.09001 * 109.47489 * 59.99489 * 12 9 8 37 37 H 1.09003 * 109.47227 * 299.99667 * 13 12 9 38 38 H 1.08997 * 109.46860 * 59.99856 * 13 12 9 39 39 H 1.09002 * 109.46974 * 299.99364 * 14 13 12 40 40 H 1.08997 * 109.47393 * 60.00239 * 14 13 12 41 41 H 0.97001 * 120.00244 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.47007 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.47120 * 299.99933 * 25 24 23 44 44 H 1.08998 * 109.46978 * 60.00666 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4315 1.2730 -0.0005 5 6 4.0514 2.5119 -0.0011 6 6 3.2593 3.6489 -0.0005 7 6 3.8903 5.0174 -0.0005 8 7 3.8775 5.5611 1.3599 9 16 4.8218 6.8678 1.7382 10 8 4.5738 7.0911 3.1195 11 8 6.1167 6.5103 1.2749 12 6 4.1406 8.2221 0.7421 13 6 4.9384 9.5006 1.0060 14 6 4.3642 10.6428 0.1652 15 6 5.1505 11.9019 0.4247 16 1 5.9768 11.8890 1.1201 17 6 4.8143 13.0708 -0.2248 18 7 3.8078 13.0866 -1.0711 19 14 5.7884 14.6317 0.0973 20 1 7.2103 14.4128 -0.2710 21 1 5.2313 15.7403 -0.7187 22 1 5.6987 14.9829 1.5374 23 6 1.8784 3.5128 0.0000 24 8 1.0948 4.6204 0.0001 25 6 -0.3193 4.4147 0.0001 26 7 1.3175 2.3141 0.0005 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0201 0.3676 -0.0005 31 1 5.1287 2.5899 -0.0019 32 1 4.9192 4.9431 -0.3524 33 1 3.3271 5.6771 -0.6606 34 1 3.3160 5.1555 2.0390 35 1 4.2069 7.9645 -0.3150 36 1 3.0968 8.3824 1.0121 37 1 4.8725 9.7584 2.0630 38 1 5.9820 9.3399 0.7356 39 1 4.4306 10.3848 -0.8917 40 1 3.3205 10.8036 0.4352 41 1 3.5710 13.9090 -1.5278 42 1 -0.8268 5.3794 -0.0004 43 1 -0.6049 3.8539 -0.8899 44 1 -0.6049 3.8540 0.8901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289548844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:11 Heat of formation + Delta-G solvation = -120.613806 kcal Electronic energy + Delta-G solvation = -27590.672568 eV Core-core repulsion = 23443.110733 eV Total energy + Delta-G solvation = -4147.561835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37451 -39.32535 -37.65801 -36.85177 -35.76097 -35.51209 -34.63407 -32.56025 -32.16171 -30.90144 -28.25502 -27.77453 -27.33820 -25.56352 -23.69238 -23.37143 -22.46954 -20.63537 -19.29528 -19.15919 -18.31151 -17.56136 -16.88918 -16.70421 -16.44745 -16.37522 -15.88906 -15.70095 -15.38793 -15.25559 -14.80185 -14.48274 -14.22596 -14.05155 -13.84665 -13.54527 -13.33147 -12.77637 -12.55231 -12.38978 -12.25090 -12.11577 -11.94753 -11.89686 -11.77705 -11.72984 -11.63963 -11.20079 -11.04156 -10.88161 -10.84783 -10.43344 -10.28059 -10.16341 -9.91795 -9.67232 -9.29481 -9.05770 -8.52025 -8.38749 -6.03922 -4.06831 0.45138 0.81556 0.87237 2.56954 2.74121 2.90538 3.33336 3.36768 3.37104 3.40422 3.80775 3.99364 4.34219 4.43924 4.46993 4.52556 4.73097 4.84324 4.86307 4.87698 4.96270 4.98193 5.13157 5.16515 5.23285 5.25661 5.29715 5.32480 5.35000 5.53301 5.75826 5.87743 5.94057 5.95379 6.30584 6.44708 6.49080 6.89871 6.94254 6.96499 7.31622 7.59304 7.69768 7.94248 8.34964 8.99262 9.57592 11.07249 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.020015 B = 0.002193 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.622696 B =12763.712517 C =13567.791592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.305 6.305 3 C 0.362 3.638 4 C -0.229 4.229 5 C 0.010 3.990 6 C -0.204 4.204 7 C 0.175 3.825 8 N -1.119 6.119 9 S 2.602 3.398 10 O -0.964 6.964 11 O -0.963 6.963 12 C -0.608 4.608 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.375 3.625 24 O -0.294 6.294 25 C 0.039 3.961 26 N -0.596 5.596 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.414 0.586 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.021 0.979 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.154 -27.428 0.184 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.211 6.211 3 C 0.184 3.816 4 C -0.249 4.249 5 C -0.016 4.016 6 C -0.209 4.209 7 C 0.049 3.951 8 N -0.877 5.877 9 S 2.698 3.302 10 O -0.954 6.954 11 O -0.953 6.953 12 C -0.740 4.740 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 C 0.196 3.804 24 O -0.200 6.200 25 C -0.056 4.056 26 N -0.335 5.335 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.164 0.836 31 H 0.172 0.828 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.247 0.753 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.119 0.881 43 H 0.077 0.923 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.157 -27.311 0.530 28.508 hybrid contribution -0.149 0.877 -0.141 0.901 sum -8.306 -26.434 0.389 27.711 Atomic orbital electron populations 1.22879 0.77045 1.03132 1.02487 1.86273 1.23087 1.24343 1.87408 1.19448 0.89149 0.83355 0.89647 1.20928 0.91543 0.99723 1.12755 1.21282 1.00794 0.89707 0.89785 1.19658 0.90305 0.97027 1.13872 1.19880 1.01219 0.90625 0.83424 1.55756 1.64457 1.49109 1.18380 1.05258 0.74566 0.75188 0.75224 1.93576 1.85659 1.85437 1.30777 1.93559 1.37328 1.81547 1.82869 1.30534 1.12637 1.15690 1.15134 1.21499 0.98250 0.92492 1.02294 1.19056 0.96365 0.90718 0.94604 1.21228 1.15681 0.94262 1.25285 0.92425 1.25022 0.95221 0.99106 0.95060 1.69945 1.27858 1.27778 1.27871 0.86613 0.80309 0.82521 0.78322 1.20127 1.21282 1.20140 1.19227 0.88211 0.83836 0.89095 1.86347 1.19669 1.27060 1.86884 1.22923 0.77208 1.03296 1.02220 1.66836 1.41458 0.98425 1.26770 0.92249 0.88460 0.92247 0.83619 0.82771 0.89102 0.90298 0.75263 0.85464 0.85217 0.91627 0.91573 0.96111 0.96136 0.92868 0.88086 0.92331 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.38 101.05 1.05 1.29 16 2 O -0.30 -2.67 10.47 -18.71 -0.20 -2.86 16 3 C 0.36 3.47 7.48 -17.13 -0.13 3.34 16 4 C -0.23 -1.87 10.04 -39.26 -0.39 -2.27 16 5 C 0.01 0.08 9.80 -39.35 -0.39 -0.31 16 6 C -0.20 -1.96 5.31 -104.30 -0.55 -2.51 16 7 C 0.17 1.73 5.94 -5.19 -0.03 1.69 16 8 N -1.12 -12.46 5.88 -11.65 -0.07 -12.53 16 9 S 2.60 37.91 5.46 -107.50 -0.59 37.32 16 10 O -0.96 -17.06 18.08 -57.54 -1.04 -18.10 16 11 O -0.96 -16.45 17.50 -57.54 -1.01 -17.45 16 12 C -0.61 -9.31 6.07 37.16 0.23 -9.08 16 13 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 14 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 19 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.38 3.88 7.46 -17.14 -0.13 3.75 16 24 O -0.29 -2.97 9.71 -18.72 -0.18 -3.15 16 25 C 0.04 0.29 10.38 101.05 1.05 1.34 16 26 N -0.60 -6.01 8.06 -13.40 -0.11 -6.12 16 27 H 0.06 0.36 8.10 -51.93 -0.42 -0.07 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 30 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.15 0.91 8.06 -52.48 -0.42 0.48 16 32 H 0.09 0.83 7.58 -51.93 -0.39 0.43 16 33 H 0.08 0.72 7.86 -51.93 -0.41 0.31 16 34 H 0.41 4.23 8.61 -34.48 -0.30 3.93 16 35 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 36 H 0.13 1.81 8.14 -51.92 -0.42 1.38 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 44 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -36.48 390.64 -8.12 -44.60 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.55 Total: -0.32 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 0.02 Total: -18.01 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.56 Total: -44.53 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -2.42 Total: -41.57 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 37.91 SS G_CDS: -0.59 Total: 37.32 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.48 -8.12 -44.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289548844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.017 kcal (2) G-P(sol) polarization free energy of solvation -36.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds