Wall clock time and date at job start Wed Apr 1 2020 02:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35668 * 117.00083 * 2 1 4 4 C 1.38798 * 119.65150 * 180.02562 * 3 2 1 5 5 C 1.38537 * 119.23470 * 179.97438 * 4 3 2 6 6 C 1.38573 * 118.55082 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.38141 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.47254 * 260.00035 * 7 6 5 9 9 S 1.65597 * 119.99942 * 165.00168 * 8 7 6 10 10 O 1.42101 * 104.27431 * 181.07413 * 9 8 7 11 11 O 1.42102 * 104.27493 * 308.92757 * 9 8 7 12 12 C 1.81389 * 104.45097 * 65.00174 * 9 8 7 13 13 C 1.53001 * 109.47229 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.46984 * 179.97438 * 13 12 9 15 15 C 1.50697 * 109.46690 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00464 * 359.97438 * 15 14 13 17 17 C 1.37887 * 119.99901 * 180.02562 * 15 14 13 18 18 N 1.31507 * 119.99697 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00064 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47115 * 59.99888 * 19 17 15 21 21 H 1.48499 * 109.47316 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47335 * 300.00426 * 19 17 15 23 23 C 1.38759 * 119.23675 * 359.97438 * 6 5 4 24 24 O 1.35673 * 119.64898 * 180.02562 * 23 6 5 25 25 C 1.42902 * 116.99979 * 179.97438 * 24 23 6 26 26 N 1.32324 * 119.64607 * 0.02562 * 3 2 1 27 27 H 1.08990 * 109.47450 * 60.00139 * 1 2 3 28 28 H 1.09003 * 109.46785 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47203 * 299.99525 * 1 2 3 30 30 H 1.07995 * 120.37927 * 359.97438 * 4 3 2 31 31 H 1.08004 * 120.72351 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.46916 * 20.00097 * 7 6 5 33 33 H 1.09003 * 109.46710 * 140.00467 * 7 6 5 34 34 H 0.97005 * 119.99302 * 345.00426 * 8 7 6 35 35 H 1.09001 * 109.47252 * 300.00111 * 12 9 8 36 36 H 1.09001 * 109.47489 * 59.99489 * 12 9 8 37 37 H 1.09003 * 109.47227 * 299.99667 * 13 12 9 38 38 H 1.08997 * 109.46860 * 59.99856 * 13 12 9 39 39 H 1.09002 * 109.46974 * 299.99364 * 14 13 12 40 40 H 1.08997 * 109.47393 * 60.00239 * 14 13 12 41 41 H 0.97001 * 120.00244 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.47007 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.47120 * 299.99933 * 25 24 23 44 44 H 1.08998 * 109.46978 * 60.00666 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4315 1.2730 -0.0005 5 6 4.0514 2.5119 -0.0011 6 6 3.2593 3.6489 -0.0005 7 6 3.8903 5.0174 -0.0005 8 7 3.8775 5.5611 1.3599 9 16 4.8218 6.8678 1.7382 10 8 4.5738 7.0911 3.1195 11 8 6.1167 6.5103 1.2749 12 6 4.1406 8.2221 0.7421 13 6 4.9384 9.5006 1.0060 14 6 4.3642 10.6428 0.1652 15 6 5.1505 11.9019 0.4247 16 1 5.9768 11.8890 1.1201 17 6 4.8143 13.0708 -0.2248 18 7 3.8078 13.0866 -1.0711 19 14 5.7884 14.6317 0.0973 20 1 7.2103 14.4128 -0.2710 21 1 5.2313 15.7403 -0.7187 22 1 5.6987 14.9829 1.5374 23 6 1.8784 3.5128 0.0000 24 8 1.0948 4.6204 0.0001 25 6 -0.3193 4.4147 0.0001 26 7 1.3175 2.3141 0.0005 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0201 0.3676 -0.0005 31 1 5.1287 2.5899 -0.0019 32 1 4.9192 4.9431 -0.3524 33 1 3.3271 5.6771 -0.6606 34 1 3.3160 5.1555 2.0390 35 1 4.2069 7.9645 -0.3150 36 1 3.0968 8.3824 1.0121 37 1 4.8725 9.7584 2.0630 38 1 5.9820 9.3399 0.7356 39 1 4.4306 10.3848 -0.8917 40 1 3.3205 10.8036 0.4352 41 1 3.5710 13.9090 -1.5278 42 1 -0.8268 5.3794 -0.0004 43 1 -0.6049 3.8539 -0.8899 44 1 -0.6049 3.8540 0.8901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289548844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:10 Heat of formation + Delta-G solvation = -150.490474 kcal Electronic energy + Delta-G solvation = -27591.968118 eV Core-core repulsion = 23443.110733 eV Total energy + Delta-G solvation = -4148.857385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03782 -39.96576 -38.34799 -38.11252 -37.02161 -36.43224 -36.39341 -34.13693 -33.26121 -31.60174 -29.62086 -28.81080 -27.96439 -26.27625 -25.58907 -24.00658 -23.17655 -22.38445 -20.32903 -19.91898 -18.98022 -18.70464 -18.54193 -17.72421 -17.36865 -17.15277 -17.03506 -16.52940 -16.49285 -16.35186 -15.97615 -15.83732 -15.28586 -14.86814 -14.46887 -14.43355 -14.21297 -14.18922 -13.93415 -13.62029 -13.47506 -13.16054 -13.07918 -12.93910 -12.88530 -12.84867 -12.71356 -12.62663 -12.52945 -12.44469 -12.13584 -11.70941 -11.66189 -11.36654 -11.13670 -10.94756 -10.82658 -10.55410 -10.34196 -9.19878 -8.20942 -6.31769 -0.71276 0.07807 0.22350 1.41157 1.43764 1.51622 1.85523 1.96356 2.13574 2.41134 2.65671 2.80344 3.12415 3.17027 3.28602 3.67308 3.80251 3.83489 3.99239 4.14298 4.25081 4.38555 4.39559 4.41812 4.42552 4.43935 4.50176 4.63703 4.69993 4.73859 4.76569 4.84480 4.93270 5.02392 5.10872 5.21668 5.35014 5.47745 5.66039 5.81660 5.81734 6.06618 6.21793 6.30789 6.63505 6.83907 7.37234 8.90285 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.020015 B = 0.002193 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.622696 B =12763.712517 C =13567.791592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.313 6.313 3 C 0.347 3.653 4 C -0.227 4.227 5 C 0.013 3.987 6 C -0.212 4.212 7 C 0.168 3.832 8 N -1.105 6.105 9 S 2.635 3.365 10 O -0.994 6.994 11 O -0.985 6.985 12 C -0.610 4.610 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.552 4.552 16 H 0.061 0.939 17 C 0.002 3.998 18 N -0.930 5.930 19 Si 0.963 3.037 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.268 1.268 23 C 0.361 3.639 24 O -0.308 6.308 25 C 0.036 3.964 26 N -0.604 5.604 27 H 0.056 0.944 28 H 0.123 0.877 29 H 0.055 0.945 30 H 0.166 0.834 31 H 0.178 0.822 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.421 0.579 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.004 0.996 40 H 0.001 0.999 41 H 0.265 0.735 42 H 0.115 0.885 43 H 0.059 0.941 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.614 -28.399 0.283 29.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.220 6.220 3 C 0.169 3.831 4 C -0.248 4.248 5 C -0.012 4.012 6 C -0.217 4.217 7 C 0.042 3.958 8 N -0.866 5.866 9 S 2.730 3.270 10 O -0.985 6.985 11 O -0.974 6.974 12 C -0.741 4.741 13 C -0.146 4.146 14 C -0.007 4.007 15 C -0.590 4.590 16 H 0.079 0.921 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.193 1.193 23 C 0.182 3.818 24 O -0.214 6.214 25 C -0.059 4.059 26 N -0.344 5.344 27 H 0.075 0.925 28 H 0.141 0.859 29 H 0.074 0.926 30 H 0.183 0.817 31 H 0.195 0.805 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.256 0.744 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.022 0.978 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.134 0.866 43 H 0.078 0.922 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.623 -28.285 0.635 29.301 hybrid contribution -0.400 1.064 -0.207 1.156 sum -8.023 -27.221 0.428 28.382 Atomic orbital electron populations 1.23056 0.75834 1.04753 1.02159 1.86266 1.24369 1.24045 1.87331 1.19789 0.89909 0.83486 0.89941 1.21217 0.91228 1.00617 1.11729 1.21593 1.01874 0.89122 0.88631 1.19708 0.90183 0.97211 1.14615 1.20091 1.02155 0.91105 0.82439 1.55405 1.64071 1.47674 1.19407 1.04088 0.74011 0.74995 0.73907 1.93532 1.86084 1.86103 1.32762 1.93529 1.38949 1.81929 1.83035 1.30505 1.12733 1.13884 1.16931 1.21313 0.98905 0.93131 1.01205 1.18958 0.95275 0.92017 0.94472 1.21730 1.16143 0.95768 1.25392 0.92120 1.25944 0.96258 1.02695 0.94767 1.70063 1.29325 1.28802 1.28781 0.85534 0.79009 0.78227 0.78508 1.19177 1.20694 1.19295 1.19426 0.88663 0.83984 0.89719 1.86320 1.20674 1.27356 1.87023 1.23055 0.76293 1.04231 1.02293 1.66809 1.41870 0.98581 1.27102 0.92520 0.85912 0.92602 0.81659 0.80458 0.88010 0.89539 0.74421 0.83492 0.83859 0.91718 0.91299 0.97768 0.98049 0.92667 0.86638 0.92230 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 113.37 1.18 1.58 16 2 O -0.31 -5.15 10.47 -89.85 -0.94 -6.09 16 3 C 0.35 6.27 7.48 84.75 0.63 6.91 16 4 C -0.23 -3.30 10.04 22.48 0.23 -3.08 16 5 C 0.01 0.18 9.80 22.42 0.22 0.40 16 6 C -0.21 -3.74 5.31 -19.66 -0.10 -3.84 16 7 C 0.17 3.00 5.94 85.63 0.51 3.51 16 8 N -1.11 -22.78 5.88 -190.78 -1.12 -23.90 16 9 S 2.63 73.41 5.46 -56.49 -0.31 73.10 16 10 O -0.99 -34.28 18.08 -127.65 -2.31 -36.58 16 11 O -0.98 -32.16 17.50 -127.65 -2.23 -34.40 16 12 C -0.61 -18.06 6.07 71.98 0.44 -17.62 16 13 C -0.11 -4.29 5.16 30.60 0.16 -4.14 16 14 C 0.03 1.60 4.97 29.85 0.15 1.75 16 15 C -0.55 -31.44 9.11 25.60 0.23 -31.21 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.00 0.09 5.46 84.66 0.46 0.55 16 18 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 19 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 C 0.36 7.14 7.46 84.74 0.63 7.78 16 24 O -0.31 -5.99 9.71 -89.90 -0.87 -6.87 16 25 C 0.04 0.52 10.38 113.37 1.18 1.69 16 26 N -0.60 -11.76 8.06 -421.97 -3.40 -15.16 16 27 H 0.06 0.65 8.10 -2.39 -0.02 0.63 16 28 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.65 8.10 -2.39 -0.02 0.63 16 30 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 31 H 0.18 1.57 8.06 -2.91 -0.02 1.54 16 32 H 0.10 1.62 7.58 -2.39 -0.02 1.60 16 33 H 0.09 1.43 7.86 -2.39 -0.02 1.41 16 34 H 0.42 7.95 8.61 -96.74 -0.83 7.12 16 35 H 0.15 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.14 3.84 8.14 -2.39 -0.02 3.83 16 37 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.06 0.82 8.10 -2.39 -0.02 0.80 16 44 H 0.06 0.82 8.10 -2.39 -0.02 0.80 16 Total: -1.00 -77.75 390.64 -2.79 -80.54 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.18 Total: 14.37 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 5.91 Total: -35.72 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -4.24 Total: -94.63 kcal Atomic # 8 Polarization: -77.58 SS G_CDS: -6.36 Total: -83.93 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 73.41 SS G_CDS: -0.31 Total: 73.10 kcal Total: -77.75 -2.79 -80.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289548844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.948 kcal (2) G-P(sol) polarization free energy of solvation -77.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds