Wall clock time and date at job start Wed Apr 1 2020 03:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34673 * 116.99821 * 2 1 4 4 O 1.21418 * 119.99976 * 0.02562 * 3 2 1 5 5 C 1.48125 * 119.99757 * 179.97438 * 3 2 1 6 6 C 1.39670 * 119.65777 * 179.97438 * 5 3 2 7 7 C 1.38542 * 119.24593 * 180.02562 * 6 5 3 8 8 C 1.38588 * 118.55035 * 359.73052 * 7 6 5 9 9 C 1.39603 * 119.25443 * 0.55017 * 8 7 6 10 10 C 1.48233 * 119.65388 * 179.70673 * 9 8 7 11 11 O 1.21508 * 119.99522 * 5.77408 * 10 9 8 12 12 N 1.34775 * 120.00300 * 185.77414 * 10 9 8 13 13 C 1.46495 * 120.00034 * 174.44577 * 12 10 9 14 14 C 1.50700 * 109.46889 * 89.99758 * 13 12 10 15 15 H 1.07999 * 120.00291 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00044 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00619 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99834 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47080 * 90.00282 * 18 16 14 20 20 H 1.48502 * 109.47099 * 210.00104 * 18 16 14 21 21 H 1.48498 * 109.47141 * 330.00090 * 18 16 14 22 22 C 1.46497 * 119.99892 * 354.71874 * 12 10 9 23 23 C 1.50702 * 109.46964 * 85.31669 * 22 12 10 24 24 C 1.34516 * 125.78986 * 89.99953 * 23 22 12 25 25 C 1.41386 * 106.83709 * 180.02562 * 24 23 22 26 26 C 1.34508 * 106.84568 * 359.97438 * 25 24 23 27 27 O 1.34304 * 125.78747 * 269.69142 * 23 22 12 28 28 N 1.32348 * 120.69952 * 359.43969 * 9 8 7 29 29 H 1.09000 * 109.47418 * 59.99438 * 1 2 3 30 30 H 1.09001 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46998 * 299.99466 * 1 2 3 32 32 H 1.08007 * 120.37774 * 359.97438 * 6 5 3 33 33 H 1.07997 * 120.72465 * 180.02562 * 7 6 5 34 34 H 1.08005 * 120.36966 * 180.26224 * 8 7 6 35 35 H 1.08992 * 109.47507 * 209.99597 * 13 12 10 36 36 H 1.09004 * 109.47389 * 330.00444 * 13 12 10 37 37 H 0.96996 * 120.00030 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.47034 * 205.31580 * 22 12 10 39 39 H 1.09002 * 109.47718 * 325.31944 * 22 12 10 40 40 H 1.07992 * 126.58134 * 359.96656 * 24 23 22 41 41 H 1.08002 * 126.57894 * 179.97438 * 25 24 23 42 42 H 1.08001 * 125.79197 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2182 0.0005 5 6 3.5426 1.2775 0.0006 6 6 4.1692 2.5257 0.0000 7 6 5.5533 2.5882 0.0000 8 6 6.2699 1.4021 0.0063 9 6 5.5802 0.1883 0.0007 10 6 6.3379 -1.0858 0.0007 11 8 7.5479 -1.0729 0.1115 12 7 5.6848 -2.2583 -0.1221 13 6 6.4396 -3.5078 -0.2444 14 6 6.6902 -4.0797 1.1272 15 1 6.3235 -3.5641 2.0025 16 6 7.3876 -5.2611 1.2647 17 7 7.6059 -5.7605 2.4616 18 14 8.0225 -6.1525 -0.2492 19 1 9.3903 -5.6712 -0.5697 20 1 8.0612 -7.6131 0.0163 21 1 7.1207 -5.8818 -1.3976 22 6 4.2201 -2.2826 -0.1392 23 6 3.7300 -2.0358 -1.5427 24 6 3.4943 -2.9802 -2.4711 25 6 3.0515 -2.3095 -3.6344 26 6 3.0426 -0.9955 -3.3471 27 8 3.4490 -0.8360 -2.0769 28 7 4.2570 0.1630 0.0006 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.5816 3.4319 -0.0012 33 1 6.0625 3.5406 0.0000 34 1 7.3498 1.4165 0.0107 35 1 5.8671 -4.2217 -0.8366 36 1 7.3926 -3.3102 -0.7352 37 1 8.0962 -6.5918 2.5582 38 1 3.8689 -3.2563 0.2024 39 1 3.8360 -1.5055 0.5216 40 1 3.6201 -4.0461 -2.3513 41 1 2.7737 -2.7649 -4.5735 42 1 2.7532 -0.2034 -4.0218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299580367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:06 Heat of formation + Delta-G solvation = -21.973849 kcal Electronic energy + Delta-G solvation = -31127.366081 eV Core-core repulsion = 26848.637643 eV Total energy + Delta-G solvation = -4278.728437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.20010 -41.05695 -40.02184 -38.49999 -36.59755 -35.48393 -33.10950 -32.71868 -32.39066 -31.78454 -30.19171 -28.12549 -28.02255 -25.64350 -24.88090 -24.48914 -22.53486 -21.32729 -21.30071 -20.41918 -19.40876 -18.28975 -17.54840 -17.13443 -16.81986 -16.62694 -16.48318 -16.27576 -15.93426 -15.35135 -15.15466 -14.95236 -14.29696 -14.16004 -14.03359 -13.63557 -13.48028 -13.27312 -12.98148 -12.56172 -12.47976 -12.45536 -12.39598 -12.29750 -12.13187 -11.68764 -11.55167 -11.09188 -10.91657 -10.89756 -10.56421 -10.26352 -10.14912 -9.88116 -9.59131 -9.52478 -9.38579 -9.05557 -8.59960 -8.20319 -7.87723 -6.09422 -4.08773 0.27917 0.78040 2.03258 2.16497 2.42537 2.88508 3.08780 3.28769 3.32803 3.35550 3.37146 3.56624 3.95336 3.99419 4.38763 4.55809 4.64458 4.73617 4.77581 4.96020 5.04056 5.05331 5.17285 5.23585 5.27097 5.32346 5.38527 5.40240 5.69860 5.76238 5.82887 6.09518 6.09847 6.14950 6.23231 6.36610 6.49581 6.64786 6.82507 6.86061 7.16531 7.29548 7.54400 7.57037 7.66044 8.05475 8.42108 8.71615 8.94821 9.49917 11.03685 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.004295 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.714314 B = 6516.942178 C = 7389.853898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.326 6.326 3 C 0.531 3.469 4 O -0.506 6.506 5 C 0.088 3.912 6 C -0.095 4.095 7 C -0.088 4.088 8 C -0.084 4.084 9 C 0.092 3.908 10 C 0.561 3.439 11 O -0.521 6.521 12 N -0.565 5.565 13 C 0.215 3.785 14 C -0.529 4.529 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.895 5.895 18 Si 0.873 3.127 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.265 1.265 22 C 0.176 3.824 23 C 0.012 3.988 24 C -0.216 4.216 25 C -0.212 4.212 26 C -0.064 4.064 27 O -0.156 6.156 28 N -0.391 5.391 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.265 0.735 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.887 14.971 -8.975 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.240 6.240 3 C 0.374 3.626 4 O -0.394 6.394 5 C -0.050 4.050 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.105 4.105 9 C -0.050 4.050 10 C 0.346 3.654 11 O -0.397 6.397 12 N -0.294 5.294 13 C 0.095 3.905 14 C -0.567 4.567 15 H 0.096 0.904 16 C -0.128 4.128 17 N -0.533 5.533 18 Si 0.700 3.300 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.190 1.190 22 C 0.052 3.948 23 C -0.040 4.040 24 C -0.236 4.236 25 C -0.231 4.231 26 C -0.133 4.133 27 O -0.051 6.051 28 N -0.106 5.106 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.174 0.826 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.147 0.853 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.790 14.521 -8.646 21.194 hybrid contribution 0.438 0.023 -1.083 1.168 sum -12.352 14.544 -9.729 21.418 Atomic orbital electron populations 1.23334 0.76164 1.04063 1.02306 1.86718 1.23037 1.31326 1.82896 1.20732 0.87725 0.81828 0.72281 1.90829 1.65933 1.36286 1.46342 1.20043 0.90982 0.90120 1.03819 1.22191 0.95469 0.98110 0.95793 1.21602 0.93164 0.99147 0.97406 1.22446 1.02992 0.91531 0.93491 1.21643 0.89045 0.95286 0.98982 1.17736 0.86654 0.82566 0.78467 1.90787 1.12988 1.86235 1.49662 1.47864 1.05923 1.07204 1.68397 1.19808 0.91995 0.80148 0.98505 1.21278 1.36293 1.07290 0.91842 0.90438 1.24820 0.95242 0.96894 0.95794 1.69889 1.40876 1.20727 1.21846 0.86903 0.80269 0.79153 0.83716 1.19892 1.21020 1.18962 1.20566 0.80111 1.05149 0.88969 1.23019 1.01815 0.81708 0.97446 1.21653 1.07858 1.00555 0.93501 1.21710 1.07573 0.93731 1.00085 1.23863 1.06028 0.98141 0.85273 1.84145 1.64465 1.32686 1.23791 1.68062 1.07053 1.28849 1.06668 0.91967 0.87748 0.91838 0.83160 0.83093 0.82592 0.94689 0.94484 0.92516 0.87555 0.85271 0.83776 0.84294 0.79396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.33 -4.11 10.19 -40.47 -0.41 -4.52 16 3 C 0.53 7.01 7.95 34.79 0.28 7.29 16 4 O -0.51 -7.03 16.11 -19.20 -0.31 -7.33 16 5 C 0.09 1.17 6.30 -83.04 -0.52 0.64 16 6 C -0.10 -1.00 9.63 -38.93 -0.38 -1.38 16 7 C -0.09 -0.84 10.16 -39.34 -0.40 -1.23 16 8 C -0.08 -1.08 9.63 -38.94 -0.38 -1.45 16 9 C 0.09 1.50 6.61 -83.03 -0.55 0.95 16 10 C 0.56 11.59 7.61 -12.15 -0.09 11.50 16 11 O -0.52 -12.35 15.97 5.36 0.09 -12.26 16 12 N -0.56 -11.84 2.45 -177.41 -0.43 -12.27 16 13 C 0.22 5.18 4.17 -5.20 -0.02 5.16 16 14 C -0.53 -14.84 9.94 -34.44 -0.34 -15.18 16 15 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 16 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 17 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 18 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 22 C 0.18 3.08 5.51 -5.19 -0.03 3.05 16 23 C 0.01 0.20 6.47 -35.62 -0.23 -0.03 16 24 C -0.22 -3.35 10.81 -39.70 -0.43 -3.78 16 25 C -0.21 -2.84 10.91 -39.70 -0.43 -3.28 16 26 C -0.06 -0.83 12.09 29.41 0.36 -0.48 16 27 O -0.16 -2.37 7.83 5.68 0.04 -2.32 16 28 N -0.39 -5.92 3.35 -6.39 -0.02 -5.94 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.15 1.28 7.64 -52.48 -0.40 0.88 16 33 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.16 1.90 7.65 -52.48 -0.40 1.50 16 35 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 36 H 0.04 0.94 6.93 -51.93 -0.36 0.58 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.11 1.83 8.04 -51.93 -0.42 1.41 16 39 H 0.13 2.19 5.25 -52.36 -0.28 1.92 16 40 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.19 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -34.74 367.56 -6.38 -41.12 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.77 Total: 2.66 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -2.20 Total: 5.21 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.32 Total: -44.60 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.59 Total: -26.44 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.74 -6.38 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299580367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.144 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds