Wall clock time and date at job start Wed Apr 1 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46788 * 2 1 4 4 C 1.46494 * 119.99907 * 274.99488 * 3 2 1 5 5 C 1.50704 * 109.47593 * 275.00361 * 4 3 2 6 6 H 1.07995 * 119.99617 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99845 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00507 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99693 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46995 * 120.00102 * 9 7 5 12 12 H 1.48502 * 109.47282 * 240.00278 * 9 7 5 13 13 S 1.65594 * 119.99912 * 95.00172 * 3 2 1 14 14 O 1.42096 * 106.40451 * 336.45734 * 13 3 2 15 15 O 1.42105 * 106.40410 * 203.53509 * 13 3 2 16 16 N 1.65603 * 107.22118 * 89.99815 * 13 3 2 17 17 C 1.47144 * 120.98277 * 269.97720 * 16 13 3 18 18 C 1.53298 * 108.38844 * 230.55719 * 17 16 13 19 19 O 1.42966 * 109.21934 * 307.69588 * 18 17 16 20 20 C 1.42958 * 114.16500 * 62.57631 * 19 18 17 21 21 H 1.09001 * 109.55160 * 57.37233 * 20 19 18 22 22 C 1.50708 * 109.51299 * 177.49264 * 20 19 18 23 23 C 1.34506 * 125.79179 * 219.76811 * 22 20 19 24 24 C 1.41388 * 106.83998 * 179.97438 * 23 22 20 25 25 C 1.34515 * 106.83843 * 359.97438 * 24 23 22 26 26 O 1.34304 * 108.42331 * 0.02562 * 25 24 23 27 27 C 1.47155 * 120.98141 * 89.99650 * 16 13 3 28 28 H 1.09002 * 109.47430 * 300.00275 * 1 2 3 29 29 H 1.08999 * 109.47346 * 60.00161 * 1 2 3 30 30 H 1.09002 * 109.47279 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47352 * 240.00059 * 2 1 3 32 32 H 1.08999 * 109.47346 * 119.99839 * 2 1 3 33 33 H 1.09008 * 109.47158 * 35.00909 * 4 3 2 34 34 H 1.09004 * 109.47014 * 155.00152 * 4 3 2 35 35 H 0.96997 * 120.00064 * 180.02562 * 8 7 5 36 36 H 1.09006 * 109.68321 * 350.27927 * 17 16 13 37 37 H 1.09002 * 109.68354 * 110.82822 * 17 16 13 38 38 H 1.08991 * 109.51127 * 67.61781 * 18 17 16 39 39 H 1.09004 * 109.51495 * 187.77717 * 18 17 16 40 40 H 1.08000 * 126.58117 * 359.96027 * 23 22 20 41 41 H 1.08001 * 126.57691 * 180.26094 * 24 23 22 42 42 H 1.07998 * 125.78442 * 180.02562 * 25 24 23 43 43 H 1.08996 * 109.68399 * 9.72035 * 27 16 13 44 44 H 1.08999 * 109.71431 * 249.18849 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1723 1.1118 -1.3835 7 6 3.8524 2.3606 -3.0849 8 7 3.0275 3.1855 -3.6921 9 14 5.5094 1.9647 -3.8511 10 1 6.2458 1.0176 -2.9759 11 1 5.3027 1.3465 -5.1853 12 1 6.2967 3.2148 -4.0013 13 16 2.4121 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3056 3.5187 1.1998 16 7 4.0143 1.8138 1.7137 17 6 4.4349 0.6255 2.4729 18 6 5.4004 1.0733 3.5762 19 8 6.4449 1.8592 2.9971 20 6 5.9947 3.0676 2.3802 21 1 5.4578 3.6723 3.1111 22 6 7.1803 3.8401 1.8615 23 6 7.3367 5.1747 1.9210 24 6 8.5836 5.4680 1.3224 25 6 9.1146 4.2949 0.9334 26 8 8.2602 3.3124 1.2623 27 6 5.0596 2.7220 1.2157 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3616 1.8097 -1.9453 34 1 2.0921 3.1803 -1.0756 35 1 3.2790 3.5874 -4.5383 36 1 3.5629 0.1478 2.9198 37 1 4.9378 -0.0762 1.8075 38 1 4.8611 1.6699 4.3118 39 1 5.8304 0.1971 4.0614 40 1 6.6430 5.8858 2.3446 41 1 9.0268 6.4458 1.2047 42 1 10.0666 4.1653 0.4402 43 1 4.6013 3.6327 0.8300 44 1 5.6255 2.2320 0.4234 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336955618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:53 Heat of formation + Delta-G solvation = -93.215768 kcal Electronic energy + Delta-G solvation = -30181.994447 eV Core-core repulsion = 26035.620680 eV Total energy + Delta-G solvation = -4146.373767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.49288 -39.21207 -36.84087 -36.06711 -35.32806 -34.65882 -33.13228 -32.73839 -32.23393 -29.98368 -29.01832 -26.73552 -26.46440 -24.26804 -23.15567 -21.99163 -21.72677 -21.40849 -20.29757 -18.59338 -17.69311 -17.19698 -16.96522 -16.54219 -16.34049 -15.85696 -15.68635 -15.23574 -14.97911 -14.96936 -14.34427 -14.11894 -13.79986 -13.54550 -13.34275 -12.93079 -12.74910 -12.63526 -12.33783 -12.13027 -12.06584 -11.95996 -11.83051 -11.74991 -11.62645 -11.41797 -11.21453 -11.09448 -10.96222 -10.70563 -10.54467 -10.42284 -10.18265 -10.05354 -9.85381 -9.78823 -8.84621 -8.52285 -8.35662 -8.07995 -6.13694 -4.20294 1.10745 1.76359 2.64567 3.01931 3.22942 3.30170 3.32097 3.36897 3.61408 3.98477 4.34895 4.61284 4.77903 4.85039 4.94767 5.01156 5.09838 5.18609 5.20959 5.24279 5.31756 5.37818 5.45317 5.61319 5.72813 5.77206 5.81562 5.86506 5.91795 6.03347 6.08318 6.21691 6.22467 6.29801 6.50044 6.57680 6.62367 6.72963 6.98612 7.25553 7.31255 7.40403 7.60539 7.83394 8.12259 8.85144 9.46367 10.94244 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.008954 B = 0.005935 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.178566 B = 4716.716500 C = 6807.949055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.990 5.990 4 C 0.244 3.756 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.282 1.282 13 S 2.784 3.216 14 O -0.995 6.995 15 O -0.974 6.974 16 N -1.006 6.006 17 C 0.083 3.917 18 C 0.053 3.947 19 O -0.370 6.370 20 C 0.163 3.837 21 H 0.092 0.908 22 C 0.001 3.999 23 C -0.197 4.197 24 C -0.215 4.215 25 C -0.038 4.038 26 O -0.160 6.160 27 C 0.102 3.898 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.264 0.736 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.107 0.893 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.202 0.798 43 H 0.111 0.889 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.370 -2.450 11.841 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.831 5.831 4 C 0.122 3.878 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.717 3.283 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 S 2.794 3.206 14 O -0.979 6.979 15 O -0.958 6.958 16 N -0.844 5.844 17 C -0.043 4.043 18 C -0.025 4.025 19 O -0.289 6.289 20 C 0.104 3.896 21 H 0.109 0.891 22 C -0.050 4.050 23 C -0.216 4.216 24 C -0.234 4.234 25 C -0.107 4.107 26 O -0.055 6.055 27 C -0.024 4.024 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.219 0.781 43 H 0.129 0.871 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.963 -2.196 12.164 13.723 hybrid contribution 1.007 -0.101 -1.020 1.437 sum 6.970 -2.297 11.143 13.343 Atomic orbital electron populations 1.22207 0.96838 1.01447 1.02413 1.20983 0.93700 0.82857 1.02099 1.57756 1.78153 1.22990 1.24200 1.19217 0.97434 0.92167 0.78936 1.21570 1.02143 1.28043 1.06047 0.91911 1.24933 0.97140 0.94794 0.96875 1.69940 1.35892 1.29824 1.17022 0.86572 0.84046 0.78386 0.79271 1.19589 1.20942 1.20798 1.01853 0.72351 0.73492 0.72952 1.93526 1.70102 1.76481 1.57758 1.93571 1.85510 1.30755 1.86009 1.58347 1.24842 1.33348 1.67908 1.22082 1.00073 0.87879 0.94309 1.22955 0.89428 0.95757 0.94344 1.88001 1.32597 1.33713 1.74554 1.20811 0.88558 0.85703 0.94560 0.89074 1.21851 0.89319 0.92309 1.01504 1.21555 0.99150 0.94459 1.06453 1.21783 0.96767 0.99302 1.05544 1.24085 0.96462 0.85994 1.04126 1.84084 1.25589 1.36720 1.59113 1.22017 0.89698 0.95318 0.95350 0.92677 0.92023 0.92273 0.90140 0.92057 0.94295 0.93222 0.92637 0.88163 0.90478 0.92460 0.87473 0.83111 0.83340 0.78150 0.87108 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.13 2.21 6.06 -4.04 -0.02 2.19 16 3 N -0.99 -20.08 2.82 -115.66 -0.33 -20.40 16 4 C 0.24 5.96 5.43 -5.19 -0.03 5.93 16 5 C -0.54 -13.88 9.38 -34.44 -0.32 -14.20 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 9 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 S 2.78 54.43 6.12 -107.50 -0.66 53.77 16 14 O -0.99 -19.33 15.73 -57.17 -0.90 -20.23 16 15 O -0.97 -22.04 15.31 -57.17 -0.88 -22.91 16 16 N -1.01 -16.98 3.40 -113.06 -0.38 -17.37 16 17 C 0.08 1.11 6.71 -3.54 -0.02 1.09 16 18 C 0.05 0.63 6.99 37.31 0.26 0.89 16 19 O -0.37 -5.45 10.37 -37.41 -0.39 -5.84 16 20 C 0.16 2.46 3.24 -27.73 -0.09 2.37 16 21 H 0.09 1.22 8.13 -51.93 -0.42 0.80 16 22 C 0.00 0.02 6.21 -35.62 -0.22 -0.20 16 23 C -0.20 -2.71 10.80 -39.70 -0.43 -3.14 16 24 C -0.21 -2.65 10.91 -39.70 -0.43 -3.09 16 25 C -0.04 -0.48 12.09 29.42 0.36 -0.12 16 26 O -0.16 -2.52 10.65 3.53 0.04 -2.49 16 27 C 0.10 1.78 5.98 -3.53 -0.02 1.76 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 32 H 0.06 0.91 7.61 -51.93 -0.40 0.52 16 33 H 0.04 0.99 8.11 -51.92 -0.42 0.57 16 34 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 36 H 0.10 1.23 6.95 -51.93 -0.36 0.87 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.11 2.08 6.95 -51.93 -0.36 1.72 16 44 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -32.64 378.10 -9.29 -41.93 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.51 Total: 3.60 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.69 Total: -7.10 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.03 Total: -62.19 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -2.13 Total: -51.47 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 54.43 SS G_CDS: -0.66 Total: 53.77 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.64 -9.29 -41.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336955618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.290 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds