Wall clock time and date at job start Wed Apr 1 2020 02:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34230 * 116.99776 * 2 1 4 4 O 1.20829 * 120.00281 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99913 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47256 * 180.02562 * 5 3 2 7 7 C 1.36807 * 119.99488 * 264.29978 * 6 5 3 8 8 H 1.08001 * 119.99315 * 135.09749 * 7 6 5 9 9 C 1.39080 * 120.00210 * 315.09126 * 7 6 5 10 10 N 1.31334 * 120.00058 * 347.96844 * 9 7 6 11 11 Si 1.86805 * 119.99883 * 167.96846 * 9 7 6 12 12 H 1.48500 * 109.47051 * 93.91839 * 11 9 7 13 13 H 1.48489 * 109.47065 * 213.92065 * 11 9 7 14 14 H 1.48508 * 109.46831 * 333.92301 * 11 9 7 15 15 C 1.34775 * 120.00004 * 84.57887 * 6 5 3 16 16 O 1.21595 * 120.00009 * 4.03698 * 15 6 5 17 17 C 1.47766 * 119.99729 * 184.04213 * 15 6 5 18 18 C 1.38388 * 119.25106 * 173.66248 * 17 15 6 19 19 C 1.40651 * 118.64388 * 179.97438 * 18 17 15 20 20 C 1.40260 * 122.04687 * 179.97438 * 19 18 17 21 21 C 1.36315 * 119.48386 * 180.02562 * 20 19 18 22 22 C 1.39247 * 120.93881 * 0.02562 * 21 20 19 23 23 C 1.36377 * 121.06221 * 359.97438 * 22 21 20 24 24 C 1.40025 * 119.59653 * 0.02562 * 23 22 21 25 25 C 1.41363 * 121.84800 * 179.97438 * 24 23 22 26 26 O 1.35498 * 119.94433 * 0.04822 * 25 24 23 27 27 C 1.42900 * 116.99737 * 183.86741 * 26 25 24 28 28 N 1.31388 * 120.11163 * 179.76878 * 25 24 23 29 29 H 1.08995 * 109.47288 * 59.99508 * 1 2 3 30 30 H 1.08995 * 109.46811 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46591 * 299.99825 * 1 2 3 32 32 H 1.09006 * 109.46867 * 60.00402 * 5 3 2 33 33 H 1.08998 * 109.47404 * 300.00788 * 5 3 2 34 34 H 0.97000 * 119.99976 * 180.02562 * 10 9 7 35 35 H 1.07999 * 120.67712 * 359.94710 * 18 17 15 36 36 H 1.08009 * 120.25819 * 0.04910 * 20 19 18 37 37 H 1.07998 * 119.53062 * 180.02562 * 21 20 19 38 38 H 1.08000 * 119.47059 * 180.02562 * 22 21 20 39 39 H 1.08003 * 120.19983 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.46569 * 184.58828 * 27 26 25 41 41 H 1.08997 * 109.47101 * 304.58265 * 27 26 25 42 42 H 1.08997 * 109.47091 * 64.58862 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.2889 3.3026 -1.1776 8 1 3.9112 4.2942 -1.3788 9 6 5.0878 2.6589 -2.1167 10 7 5.7387 1.5669 -1.7870 11 14 5.2348 3.3475 -3.8470 12 1 6.4257 4.2308 -3.9286 13 1 5.3802 2.2299 -4.8138 14 1 4.0153 4.1294 -4.1738 15 6 4.0666 3.3570 1.1632 16 8 3.8700 2.7831 2.2171 17 6 4.3985 4.7969 1.1567 18 6 4.3525 5.5069 2.3437 19 6 4.6714 6.8766 2.3229 20 6 4.6472 7.6641 3.4833 21 6 4.9654 8.9871 3.4030 22 6 5.3131 9.5672 2.1858 23 6 5.3464 8.8300 1.0390 24 6 5.0256 7.4677 1.0830 25 6 5.0442 6.6591 -0.0764 26 8 5.3802 7.1996 -1.2726 27 6 5.2963 6.3469 -2.4162 28 7 4.7414 5.3832 0.0049 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 3.9564 0.7807 -0.8892 33 1 3.9558 0.7809 0.8907 34 1 6.2962 1.1182 -2.4418 35 1 4.0768 5.0192 3.2671 36 1 4.3790 7.2255 4.4332 37 1 4.9474 9.5941 4.2961 38 1 5.5613 10.6177 2.1495 39 1 5.6177 9.2943 0.1023 40 1 5.6688 6.8771 -3.2928 41 1 5.8985 5.4540 -2.2486 42 1 4.2577 6.0593 -2.5796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348805099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:46 Heat of formation + Delta-G solvation = -87.159704 kcal Electronic energy + Delta-G solvation = -30756.340924 eV Core-core repulsion = 26474.785816 eV Total energy + Delta-G solvation = -4281.555108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.15887 -41.53875 -40.24124 -39.54450 -37.72796 -37.39433 -36.74165 -33.60928 -33.35211 -32.41214 -30.84145 -30.04303 -28.51703 -27.98693 -26.75124 -25.08671 -24.60151 -22.95305 -22.57125 -21.47725 -20.10538 -19.12254 -18.78279 -18.56602 -18.30260 -17.47894 -17.37894 -17.12890 -16.85186 -16.56553 -16.42646 -16.17109 -15.67104 -15.54382 -14.92291 -14.85656 -14.69332 -14.56924 -14.42538 -14.23126 -13.96465 -13.40084 -13.29194 -13.07756 -13.03019 -12.94676 -12.86717 -12.65165 -12.42644 -12.10732 -12.03886 -11.95627 -11.81696 -11.62107 -11.18469 -11.04797 -10.71709 -10.17756 -10.04225 -9.45675 -8.76760 -8.31528 -6.04527 -0.65552 -0.19288 0.91131 1.19413 1.32995 1.41292 1.47746 1.51879 1.81281 1.98876 2.27275 2.49696 2.66920 3.03545 3.17277 3.42880 3.67491 3.86519 3.90699 4.00885 4.04793 4.22760 4.28179 4.29773 4.35958 4.36125 4.37665 4.45308 4.49048 4.62476 4.74093 4.76017 4.78007 4.84106 5.01062 5.11353 5.28705 5.38530 5.49665 5.51597 5.62686 5.80033 5.94915 6.13386 6.50861 6.74628 6.85962 7.11050 7.36392 7.79563 8.75156 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010923 B = 0.004710 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.883190 B = 5942.928101 C = 7771.912718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.453 3.547 4 O -0.534 6.534 5 C 0.124 3.876 6 N -0.413 5.413 7 C -0.306 4.306 8 H 0.114 0.886 9 C -0.002 4.002 10 N -0.903 5.903 11 Si 0.957 3.043 12 H -0.253 1.253 13 H -0.284 1.284 14 H -0.256 1.256 15 C 0.511 3.489 16 O -0.620 6.620 17 C 0.098 3.902 18 C -0.143 4.143 19 C -0.022 4.022 20 C -0.120 4.120 21 C -0.082 4.082 22 C -0.114 4.114 23 C -0.083 4.083 24 C -0.117 4.117 25 C 0.324 3.676 26 O -0.298 6.298 27 C 0.026 3.974 28 N -0.499 5.499 29 H 0.059 0.941 30 H 0.140 0.860 31 H 0.055 0.945 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.273 0.727 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.169 0.831 38 H 0.166 0.834 39 H 0.148 0.852 40 H 0.131 0.869 41 H 0.052 0.948 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 11.824 2.719 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.296 3.704 4 O -0.423 6.423 5 C -0.002 4.002 6 N -0.129 5.129 7 C -0.434 4.434 8 H 0.131 0.869 9 C -0.203 4.203 10 N -0.542 5.542 11 Si 0.780 3.220 12 H -0.177 1.177 13 H -0.210 1.210 14 H -0.180 1.180 15 C 0.302 3.698 16 O -0.508 6.508 17 C -0.027 4.027 18 C -0.166 4.166 19 C -0.027 4.027 20 C -0.138 4.138 21 C -0.100 4.100 22 C -0.132 4.132 23 C -0.103 4.103 24 C -0.120 4.120 25 C 0.130 3.870 26 O -0.204 6.204 27 C -0.069 4.069 28 N -0.226 5.226 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.074 0.926 32 H 0.155 0.845 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.164 0.836 36 H 0.170 0.830 37 H 0.186 0.814 38 H 0.184 0.816 39 H 0.165 0.835 40 H 0.149 0.851 41 H 0.071 0.929 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.809 11.285 2.334 11.665 hybrid contribution -0.180 -0.392 -0.424 0.605 sum -1.989 10.893 1.910 11.236 Atomic orbital electron populations 1.23545 0.75045 1.05794 1.02115 1.86510 1.25025 1.32443 1.84066 1.24914 0.93135 0.81433 0.70917 1.90563 1.67553 1.37562 1.46658 1.20948 0.85280 0.87292 1.06635 1.43116 1.54556 1.08826 1.06358 1.20253 1.28501 1.02397 0.92284 0.86875 1.26255 0.93962 0.96654 1.03402 1.69872 1.28045 1.20015 1.36233 0.85572 0.80022 0.78705 0.77668 1.17745 1.21009 1.17986 1.18589 0.80530 0.87014 0.83655 1.90571 1.58093 1.70058 1.32036 1.20340 0.99539 0.93663 0.89146 1.22030 1.02145 0.93974 0.98424 1.18142 0.97775 0.92615 0.94121 1.21236 1.01085 0.94817 0.96623 1.21465 0.94907 0.94164 0.99492 1.21398 0.98576 1.01790 0.91440 1.21181 0.97409 0.90684 1.00982 1.18374 1.06494 0.96333 0.90799 1.20589 0.91141 0.88569 0.86703 1.86084 1.81590 1.39414 1.13306 1.23356 1.02481 0.95360 0.85656 1.68060 1.16566 1.09678 1.28283 0.92266 0.84174 0.92580 0.84451 0.88424 0.91690 0.83634 0.82992 0.81396 0.81631 0.83470 0.85116 0.92936 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.56 113.37 1.20 2.00 16 2 O -0.36 -14.17 10.57 -51.41 -0.54 -14.72 16 3 C 0.45 21.48 7.99 71.24 0.57 22.05 16 4 O -0.53 -28.00 16.06 21.95 0.35 -27.65 16 5 C 0.12 6.24 5.47 85.63 0.47 6.71 16 6 N -0.41 -22.59 2.01 -642.98 -1.29 -23.89 16 7 C -0.31 -16.33 7.50 84.12 0.63 -15.70 16 8 H 0.11 6.09 4.54 -2.91 -0.01 6.07 16 9 C 0.00 -0.08 5.07 84.97 0.43 0.35 16 10 N -0.90 -47.83 11.52 21.68 0.25 -47.58 16 11 Si 0.96 39.13 25.82 68.60 1.77 40.90 16 12 H -0.25 -9.49 6.77 99.48 0.67 -8.81 16 13 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 15 C 0.51 28.18 7.41 86.76 0.64 28.83 16 16 O -0.62 -35.37 15.93 -4.02 -0.06 -35.44 16 17 C 0.10 4.79 6.65 41.41 0.28 5.06 16 18 C -0.14 -5.91 9.41 22.89 0.22 -5.69 16 19 C -0.02 -0.74 5.74 -21.30 -0.12 -0.86 16 20 C -0.12 -2.85 9.81 22.31 0.22 -2.63 16 21 C -0.08 -1.40 9.95 22.06 0.22 -1.18 16 22 C -0.11 -1.99 9.95 22.08 0.22 -1.77 16 23 C -0.08 -2.03 9.58 22.27 0.21 -1.82 16 24 C -0.12 -3.94 5.76 -21.18 -0.12 -4.07 16 25 C 0.32 12.84 7.54 85.53 0.64 13.48 16 26 O -0.30 -10.44 9.74 -87.99 -0.86 -11.30 16 27 C 0.03 0.88 8.24 113.37 0.93 1.82 16 28 N -0.50 -23.41 5.07 -297.69 -1.51 -24.92 16 29 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 30 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.06 1.63 8.13 -2.38 -0.02 1.61 16 32 H 0.14 7.02 5.84 -2.38 -0.01 7.01 16 33 H 0.10 4.89 7.53 -2.39 -0.02 4.88 16 34 H 0.27 13.61 8.31 -92.71 -0.77 12.83 16 35 H 0.15 5.77 7.61 -2.91 -0.02 5.75 16 36 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.15 3.13 7.65 -2.91 -0.02 3.11 16 40 H 0.13 3.24 8.14 -2.38 -0.02 3.22 16 41 H 0.05 2.06 5.60 -2.39 -0.01 2.04 16 42 H 0.05 1.87 7.23 -2.39 -0.02 1.85 16 Total: -1.00 -74.08 355.35 5.79 -68.28 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 1.05 Total: 29.72 kcal Atomic # 6 Polarization: 39.95 SS G_CDS: 6.64 Total: 46.58 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -2.55 Total: -96.39 kcal Atomic # 8 Polarization: -88.00 SS G_CDS: -1.11 Total: -89.11 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.77 Total: 40.90 kcal Total: -74.08 5.79 -68.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348805099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.876 kcal (2) G-P(sol) polarization free energy of solvation -74.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds