Wall clock time and date at job start Wed Apr 1 2020 02:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.46469 * 2 1 4 4 C 1.34791 * 116.99523 * 180.02562 * 3 2 1 5 5 O 1.21531 * 119.99980 * 359.97438 * 4 3 2 6 6 C 1.47200 * 119.99682 * 180.02562 * 4 3 2 7 7 C 1.40528 * 120.34509 * 359.97438 * 6 4 3 8 8 N 1.30791 * 121.61555 * 180.02562 * 7 6 4 9 9 C 1.34022 * 121.95207 * 0.02716 * 8 7 6 10 10 C 1.40437 * 120.75245 * 179.97438 * 9 8 7 11 11 C 1.36215 * 119.82089 * 180.02562 * 10 9 8 12 12 C 1.39221 * 121.03880 * 0.02562 * 11 10 9 13 13 C 1.36275 * 120.77816 * 359.97438 * 12 11 10 14 14 C 1.40272 * 119.63360 * 359.74236 * 13 12 11 15 15 C 1.40018 * 120.34152 * 179.97438 * 6 4 3 16 16 O 1.35232 * 121.09762 * 359.95817 * 15 6 4 17 17 C 1.42894 * 117.00143 * 89.99925 * 16 15 6 18 18 C 1.50706 * 109.47263 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99667 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00081 * 179.72605 * 18 17 16 21 21 C 1.37095 * 119.99878 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00160 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00380 * 179.97438 * 21 20 18 24 24 N 1.31404 * 120.00261 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99599 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47644 * 89.99834 * 25 23 21 27 27 H 1.48506 * 109.47143 * 209.99780 * 25 23 21 28 28 H 1.48501 * 109.47120 * 329.99495 * 25 23 21 29 29 H 1.09009 * 109.46691 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47091 * 299.99562 * 1 2 3 31 31 H 1.08998 * 109.47439 * 60.00494 * 1 2 3 32 32 H 1.08993 * 109.47210 * 240.00220 * 2 1 3 33 33 H 1.08998 * 109.47439 * 119.99506 * 2 1 3 34 34 H 1.08000 * 119.19372 * 0.02562 * 7 6 4 35 35 H 1.08002 * 120.09154 * 0.03141 * 10 9 8 36 36 H 1.07999 * 119.47980 * 179.97438 * 11 10 9 37 37 H 1.07999 * 119.61429 * 179.97438 * 12 11 10 38 38 H 1.07995 * 120.18436 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.47678 * 59.99953 * 17 16 15 40 40 H 1.08998 * 109.47532 * 299.99898 * 17 16 15 41 41 H 0.96998 * 120.00525 * 359.97438 * 20 18 17 42 42 H 0.97009 * 120.00065 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0138 1.3691 0.0000 4 6 3.3501 1.5457 -0.0005 5 8 4.0905 0.5819 -0.0005 6 6 3.9126 2.9060 0.0000 7 6 3.0632 4.0255 0.0005 8 7 3.5361 5.2449 0.0005 9 6 4.8528 5.4951 -0.0005 10 6 5.3330 6.8148 -0.0011 11 6 6.6752 7.0472 -0.0027 12 6 7.5860 5.9943 -0.0043 13 6 7.1568 4.7009 -0.0039 14 6 5.7812 4.4267 0.0038 15 6 5.2996 3.0978 0.0000 16 8 6.1501 2.0465 0.0003 17 6 6.5582 1.5417 -1.2727 18 6 7.4984 0.3806 -1.0748 19 8 7.7906 0.0211 0.0462 20 7 8.0105 -0.2614 -2.1434 21 6 8.8654 -1.3180 -1.9634 22 1 9.1288 -1.6356 -0.9653 23 6 9.3930 -1.9804 -3.0650 24 7 10.2128 -2.9927 -2.8924 25 14 8.9381 -1.4307 -4.7914 26 1 9.9068 -0.4055 -5.2559 27 1 8.9750 -2.5981 -5.7085 28 1 7.5707 -0.8515 -4.7822 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.9937 3.8753 0.0010 35 1 4.6400 7.6432 -0.0001 36 1 7.0384 8.0643 -0.0035 37 1 8.6453 6.2050 -0.0060 38 1 7.8718 3.8916 -0.0056 39 1 7.0659 2.3289 -1.8300 40 1 5.6822 1.2094 -1.8297 41 1 7.7738 0.0235 -3.0399 42 1 10.5815 -3.4549 -3.6616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351886895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:19 Heat of formation + Delta-G solvation = -88.942020 kcal Electronic energy + Delta-G solvation = -29575.742704 eV Core-core repulsion = 25294.110309 eV Total energy + Delta-G solvation = -4281.632395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48546 -40.12493 -39.03116 -37.77585 -37.18177 -36.44251 -34.04426 -32.81369 -32.02577 -31.75095 -30.95560 -30.25133 -28.33624 -25.42906 -24.51286 -24.11792 -23.21786 -22.02809 -21.51585 -19.65740 -18.95860 -18.63281 -18.44610 -17.71939 -17.00927 -16.65565 -16.27276 -15.94228 -15.62548 -15.37154 -15.04456 -14.74678 -14.56324 -14.28743 -14.07778 -13.91773 -13.79172 -13.62787 -13.10940 -12.96040 -12.68387 -12.44600 -12.20454 -12.12855 -12.05783 -11.95102 -11.84028 -11.74332 -11.24859 -10.72394 -10.64541 -10.61935 -10.40599 -10.07298 -10.02416 -9.81412 -9.63308 -9.17479 -8.60290 -8.46391 -8.25174 -6.35619 -3.88010 -0.18134 0.32181 1.44213 2.21414 2.44829 2.85130 2.98979 3.02571 3.10135 3.17338 3.60856 3.79275 3.94224 4.05733 4.31572 4.33659 4.41816 4.63330 4.64237 4.77850 4.82203 4.85094 4.97456 5.05557 5.12939 5.13876 5.14837 5.23634 5.35807 5.53277 5.58761 5.62080 5.65736 5.68941 5.73780 5.75793 5.99435 6.10907 6.17103 6.32834 6.49118 7.17540 7.51823 7.54349 7.73253 8.05216 8.52618 8.88291 9.33959 9.71438 10.77054 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.008190 B = 0.003909 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.959341 B = 7161.075817 C = 9768.020715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.359 6.359 4 C 0.505 3.495 5 O -0.467 6.467 6 C -0.218 4.218 7 C 0.195 3.805 8 N -0.489 5.489 9 C 0.161 3.839 10 C -0.108 4.108 11 C -0.079 4.079 12 C -0.125 4.125 13 C -0.069 4.069 14 C -0.138 4.138 15 C 0.247 3.753 16 O -0.286 6.286 17 C 0.070 3.930 18 C 0.457 3.543 19 O -0.548 6.548 20 N -0.583 5.583 21 C -0.305 4.305 22 H 0.122 0.878 23 C 0.045 3.955 24 N -0.877 5.877 25 Si 0.878 3.122 26 H -0.269 1.269 27 H -0.275 1.275 28 H -0.270 1.270 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.176 0.824 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.371 0.629 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.157 18.586 1.252 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.277 6.277 4 C 0.347 3.653 5 O -0.353 6.353 6 C -0.222 4.222 7 C 0.021 3.979 8 N -0.197 5.197 9 C 0.041 3.959 10 C -0.127 4.127 11 C -0.099 4.099 12 C -0.143 4.143 13 C -0.087 4.087 14 C -0.140 4.140 15 C 0.193 3.807 16 O -0.200 6.200 17 C -0.008 4.008 18 C 0.242 3.758 19 O -0.429 6.429 20 N -0.224 5.224 21 C -0.433 4.433 22 H 0.139 0.861 23 C -0.159 4.159 24 N -0.517 5.517 25 Si 0.704 3.296 26 H -0.194 1.194 27 H -0.200 1.200 28 H -0.195 1.195 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.193 0.807 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.204 0.796 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.993 18.509 2.086 24.550 hybrid contribution 0.198 -0.617 -1.551 1.681 sum -15.795 17.892 0.534 23.873 Atomic orbital electron populations 1.21804 0.92549 1.03038 1.03401 1.23056 0.95160 0.79728 1.03148 1.86491 1.23546 1.32753 1.84887 1.20545 0.80961 0.89190 0.74623 1.91053 1.59720 1.41505 1.42979 1.20575 0.93538 0.93118 1.14984 1.23123 1.00450 0.85543 0.88758 1.68018 1.13706 1.22873 1.15110 1.18932 0.88177 0.93401 0.95347 1.20786 0.95849 0.94563 1.01472 1.21060 0.92830 0.99825 0.96203 1.21001 1.00591 0.92200 1.00539 1.21152 0.93750 0.98172 0.95659 1.19164 0.95975 0.92291 1.06602 1.19334 0.87550 0.87045 0.86802 1.85862 1.61294 1.44130 1.28708 1.22487 0.98781 0.96853 0.82650 1.19035 0.85123 0.85676 0.85989 1.90615 1.61916 1.67134 1.23225 1.42008 1.43509 1.30848 1.06042 1.19418 1.20410 1.06121 0.97361 0.86053 1.25007 0.96594 0.96066 0.98225 1.69612 1.30358 1.20358 1.31366 0.86703 0.78830 0.79372 0.84716 1.19449 1.19963 1.19515 0.90167 0.91486 0.91491 0.90955 0.90912 0.80666 0.84210 0.84860 0.84834 0.84066 0.90976 0.90690 0.79625 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.67 6.20 37.16 0.23 0.90 16 3 O -0.36 -4.42 9.46 -40.74 -0.39 -4.80 16 4 C 0.50 7.72 7.89 34.37 0.27 8.00 16 5 O -0.47 -9.02 13.97 -26.50 -0.37 -9.39 16 6 C -0.22 -3.10 5.90 -104.73 -0.62 -3.72 16 7 C 0.20 2.28 10.75 -17.13 -0.18 2.10 16 8 N -0.49 -6.04 10.30 -10.73 -0.11 -6.15 16 9 C 0.16 2.00 6.60 -84.82 -0.56 1.44 16 10 C -0.11 -1.04 9.97 -39.48 -0.39 -1.44 16 11 C -0.08 -0.65 9.94 -39.94 -0.40 -1.05 16 12 C -0.13 -1.18 9.96 -39.92 -0.40 -1.58 16 13 C -0.07 -0.84 9.58 -39.52 -0.38 -1.22 16 14 C -0.14 -1.89 5.75 -106.69 -0.61 -2.50 16 15 C 0.25 3.88 5.80 -37.74 -0.22 3.66 16 16 O -0.29 -5.45 7.38 -47.50 -0.35 -5.80 16 17 C 0.07 1.28 5.94 36.01 0.21 1.50 16 18 C 0.46 10.98 7.86 -10.98 -0.09 10.89 16 19 O -0.55 -15.73 16.08 -14.37 -0.23 -15.97 16 20 N -0.58 -14.18 5.09 -10.96 -0.06 -14.24 16 21 C -0.30 -8.69 10.16 -14.93 -0.15 -8.84 16 22 H 0.12 3.95 7.39 -52.48 -0.39 3.57 16 23 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 24 N -0.88 -25.52 13.96 55.50 0.77 -24.75 16 25 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 29 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.18 1.54 7.58 -52.49 -0.40 1.14 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.14 1.84 7.66 -52.49 -0.40 1.44 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.29 7.54 -51.93 -0.39 0.90 16 41 H 0.37 7.82 5.76 -40.82 -0.24 7.59 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -36.21 370.04 -7.65 -43.87 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.79 Total: 8.59 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -3.00 Total: 8.56 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.61 Total: -45.14 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.34 Total: -35.96 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.21 -7.65 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351886895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.075 kcal (2) G-P(sol) polarization free energy of solvation -36.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds