Wall clock time and date at job start Wed Apr 1 2020 02:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.46469 * 2 1 4 4 C 1.34791 * 116.99523 * 180.02562 * 3 2 1 5 5 O 1.21531 * 119.99980 * 359.97438 * 4 3 2 6 6 C 1.47200 * 119.99682 * 180.02562 * 4 3 2 7 7 C 1.40528 * 120.34509 * 359.97438 * 6 4 3 8 8 N 1.30791 * 121.61555 * 180.02562 * 7 6 4 9 9 C 1.34022 * 121.95207 * 0.02716 * 8 7 6 10 10 C 1.40437 * 120.75245 * 179.97438 * 9 8 7 11 11 C 1.36215 * 119.82089 * 180.02562 * 10 9 8 12 12 C 1.39221 * 121.03880 * 0.02562 * 11 10 9 13 13 C 1.36275 * 120.77816 * 359.97438 * 12 11 10 14 14 C 1.40272 * 119.63360 * 359.74236 * 13 12 11 15 15 C 1.40018 * 120.34152 * 179.97438 * 6 4 3 16 16 O 1.35232 * 121.09762 * 359.95817 * 15 6 4 17 17 C 1.42894 * 117.00143 * 89.99925 * 16 15 6 18 18 C 1.50706 * 109.47263 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99667 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00081 * 179.72605 * 18 17 16 21 21 C 1.37095 * 119.99878 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00160 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00380 * 179.97438 * 21 20 18 24 24 N 1.31404 * 120.00261 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99599 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47644 * 89.99834 * 25 23 21 27 27 H 1.48506 * 109.47143 * 209.99780 * 25 23 21 28 28 H 1.48501 * 109.47120 * 329.99495 * 25 23 21 29 29 H 1.09009 * 109.46691 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47091 * 299.99562 * 1 2 3 31 31 H 1.08998 * 109.47439 * 60.00494 * 1 2 3 32 32 H 1.08993 * 109.47210 * 240.00220 * 2 1 3 33 33 H 1.08998 * 109.47439 * 119.99506 * 2 1 3 34 34 H 1.08000 * 119.19372 * 0.02562 * 7 6 4 35 35 H 1.08002 * 120.09154 * 0.03141 * 10 9 8 36 36 H 1.07999 * 119.47980 * 179.97438 * 11 10 9 37 37 H 1.07999 * 119.61429 * 179.97438 * 12 11 10 38 38 H 1.07995 * 120.18436 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.47678 * 59.99953 * 17 16 15 40 40 H 1.08998 * 109.47532 * 299.99898 * 17 16 15 41 41 H 0.96998 * 120.00525 * 359.97438 * 20 18 17 42 42 H 0.97009 * 120.00065 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0138 1.3691 0.0000 4 6 3.3501 1.5457 -0.0005 5 8 4.0905 0.5819 -0.0005 6 6 3.9126 2.9060 0.0000 7 6 3.0632 4.0255 0.0005 8 7 3.5361 5.2449 0.0005 9 6 4.8528 5.4951 -0.0005 10 6 5.3330 6.8148 -0.0011 11 6 6.6752 7.0472 -0.0027 12 6 7.5860 5.9943 -0.0043 13 6 7.1568 4.7009 -0.0039 14 6 5.7812 4.4267 0.0038 15 6 5.2996 3.0978 0.0000 16 8 6.1501 2.0465 0.0003 17 6 6.5582 1.5417 -1.2727 18 6 7.4984 0.3806 -1.0748 19 8 7.7906 0.0211 0.0462 20 7 8.0105 -0.2614 -2.1434 21 6 8.8654 -1.3180 -1.9634 22 1 9.1288 -1.6356 -0.9653 23 6 9.3930 -1.9804 -3.0650 24 7 10.2128 -2.9927 -2.8924 25 14 8.9381 -1.4307 -4.7914 26 1 9.9068 -0.4055 -5.2559 27 1 8.9750 -2.5981 -5.7085 28 1 7.5707 -0.8515 -4.7822 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.9937 3.8753 0.0010 35 1 4.6400 7.6432 -0.0001 36 1 7.0384 8.0643 -0.0035 37 1 8.6453 6.2050 -0.0060 38 1 7.8718 3.8916 -0.0056 39 1 7.0659 2.3289 -1.8300 40 1 5.6822 1.2094 -1.8297 41 1 7.7738 0.0235 -3.0399 42 1 10.5815 -3.4549 -3.6616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351886895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:18 Heat of formation + Delta-G solvation = -113.356643 kcal Electronic energy + Delta-G solvation = -29576.801401 eV Core-core repulsion = 25294.110309 eV Total energy + Delta-G solvation = -4282.691093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.51997 -41.20000 -40.63825 -39.31681 -38.08935 -37.60772 -36.14086 -33.93746 -33.78757 -32.84736 -31.79067 -31.19204 -29.90948 -26.69344 -26.09770 -25.13479 -24.01522 -23.00269 -22.52449 -21.64260 -20.61539 -19.91156 -19.56574 -18.78773 -18.09705 -17.90214 -17.65522 -17.32230 -16.95739 -16.71501 -16.43229 -16.00605 -15.56790 -15.47126 -15.13478 -15.02622 -14.92513 -14.86412 -14.61667 -14.35494 -14.11532 -13.96047 -13.62360 -13.03783 -13.01460 -12.85590 -12.82676 -12.64358 -12.51692 -12.50076 -12.03442 -11.92357 -11.62757 -11.57909 -11.41296 -11.32225 -10.84589 -10.60305 -10.36680 -10.03910 -9.34726 -8.48299 -6.11667 -1.19990 -0.55955 0.53165 1.20236 1.26097 1.29938 1.40332 1.42891 1.73106 1.74594 2.01011 2.17564 2.86073 2.92626 3.05159 3.10735 3.38561 3.45706 3.48234 3.74334 3.79009 3.94559 3.98522 3.99204 4.05948 4.08058 4.23651 4.25289 4.34879 4.35946 4.56174 4.82959 4.88378 4.93974 4.95565 5.10656 5.17899 5.29621 5.36220 5.39827 5.43095 5.74527 5.81223 5.98290 6.47665 6.55302 6.65422 6.74577 7.22484 7.76031 8.68828 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.008190 B = 0.003909 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.959341 B = 7161.075817 C = 9768.020715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 O -0.345 6.345 4 C 0.509 3.491 5 O -0.518 6.518 6 C -0.224 4.224 7 C 0.201 3.799 8 N -0.486 5.486 9 C 0.147 3.853 10 C -0.108 4.108 11 C -0.064 4.064 12 C -0.108 4.108 13 C -0.099 4.099 14 C -0.147 4.147 15 C 0.219 3.781 16 O -0.315 6.315 17 C 0.085 3.915 18 C 0.454 3.546 19 O -0.606 6.606 20 N -0.577 5.577 21 C -0.334 4.334 22 H 0.057 0.943 23 C -0.007 4.007 24 N -0.926 5.926 25 Si 0.962 3.038 26 H -0.249 1.249 27 H -0.269 1.269 28 H -0.236 1.236 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.205 0.795 35 H 0.164 0.836 36 H 0.177 0.823 37 H 0.160 0.840 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.391 0.609 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.165 22.773 -1.195 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 O -0.262 6.262 4 C 0.353 3.647 5 O -0.407 6.407 6 C -0.228 4.228 7 C 0.027 3.973 8 N -0.194 5.194 9 C 0.027 3.973 10 C -0.126 4.126 11 C -0.084 4.084 12 C -0.126 4.126 13 C -0.118 4.118 14 C -0.149 4.149 15 C 0.166 3.834 16 O -0.230 6.230 17 C 0.008 3.992 18 C 0.241 3.759 19 O -0.491 6.491 20 N -0.219 5.219 21 C -0.463 4.463 22 H 0.075 0.925 23 C -0.207 4.207 24 N -0.566 5.566 25 Si 0.781 3.219 26 H -0.173 1.173 27 H -0.194 1.194 28 H -0.160 1.160 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.222 0.778 35 H 0.182 0.818 36 H 0.194 0.806 37 H 0.177 0.823 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.107 0.893 41 H 0.227 0.773 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.042 22.734 -0.366 29.025 hybrid contribution 0.863 -1.843 -0.640 2.133 sum -17.179 20.891 -1.006 27.066 Atomic orbital electron populations 1.21813 0.89322 1.04448 1.04232 1.23336 0.97583 0.78778 1.02312 1.86503 1.21853 1.33811 1.84079 1.20837 0.81472 0.89154 0.73205 1.91035 1.60946 1.43085 1.45663 1.20663 0.93362 0.93292 1.15521 1.23463 1.01270 0.84527 0.88078 1.68094 1.13777 1.22774 1.14763 1.19333 0.88002 0.94291 0.95647 1.21159 0.97091 0.93805 1.00582 1.21526 0.91911 1.01368 0.93556 1.21392 1.02369 0.91194 0.97609 1.21129 0.93004 0.99225 0.98468 1.19247 0.96908 0.91596 1.07194 1.19616 0.87725 0.87026 0.89009 1.85811 1.62440 1.45779 1.28997 1.22250 0.98035 0.95515 0.83434 1.20088 0.84625 0.86275 0.84911 1.90577 1.63858 1.69022 1.25601 1.41770 1.42934 1.29917 1.07288 1.18984 1.23133 1.08742 0.95431 0.92527 1.26090 0.95424 0.95274 1.03885 1.69785 1.31341 1.21728 1.33712 0.85416 0.80565 0.79590 0.76316 1.17296 1.19414 1.15991 0.88458 0.90724 0.90516 0.91683 0.92077 0.77818 0.81805 0.80608 0.82265 0.85951 0.86993 0.89290 0.77254 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 10.29 71.98 0.74 -1.04 16 2 C 0.05 1.13 6.20 71.98 0.45 1.58 16 3 O -0.35 -8.41 9.46 -57.02 -0.54 -8.95 16 4 C 0.51 15.98 7.89 70.18 0.55 16.53 16 5 O -0.52 -21.13 13.97 26.63 0.37 -20.76 16 6 C -0.22 -6.39 5.90 -19.93 -0.12 -6.51 16 7 C 0.20 4.39 10.75 85.41 0.92 5.31 16 8 N -0.49 -10.95 10.30 -187.87 -1.93 -12.88 16 9 C 0.15 3.33 6.60 40.16 0.27 3.60 16 10 C -0.11 -1.67 9.97 22.33 0.22 -1.45 16 11 C -0.06 -0.75 9.94 22.03 0.22 -0.53 16 12 C -0.11 -1.70 9.96 22.05 0.22 -1.48 16 13 C -0.10 -2.37 9.58 22.31 0.21 -2.16 16 14 C -0.15 -3.94 5.75 -21.21 -0.12 -4.06 16 15 C 0.22 7.03 5.80 23.47 0.14 7.17 16 16 O -0.32 -12.59 7.38 -56.35 -0.42 -13.01 16 17 C 0.08 3.17 5.94 71.24 0.42 3.60 16 18 C 0.45 22.89 7.86 87.66 0.69 23.58 16 19 O -0.61 -37.58 16.08 15.95 0.26 -37.32 16 20 N -0.58 -28.82 5.09 -306.98 -1.56 -30.38 16 21 C -0.33 -20.18 10.16 84.04 0.85 -19.32 16 22 H 0.06 4.07 7.39 -2.91 -0.02 4.04 16 23 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 24 N -0.93 -55.93 13.96 21.66 0.30 -55.63 16 25 Si 0.96 38.77 27.74 68.60 1.90 40.67 16 26 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 27 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 28 H -0.24 -8.21 6.52 99.48 0.65 -7.56 16 29 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.21 3.08 7.58 -2.91 -0.02 3.06 16 35 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.12 3.32 7.66 -2.91 -0.02 3.30 16 39 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.09 3.07 7.54 -2.39 -0.02 3.05 16 41 H 0.39 16.05 5.76 -92.71 -0.53 15.52 16 42 H 0.28 15.47 8.31 -92.70 -0.77 14.70 16 Total: -1.00 -88.19 370.04 5.00 -83.19 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.49 Total: 30.18 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: 6.13 Total: 24.89 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -3.19 Total: -98.89 kcal Atomic # 8 Polarization: -79.71 SS G_CDS: -0.33 Total: -80.04 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 1.90 Total: 40.67 kcal Total: -88.19 5.00 -83.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351886895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.167 kcal (2) G-P(sol) polarization free energy of solvation -88.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds