Wall clock time and date at job start Wed Apr 1 2020 02:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 117.00260 * 2 1 4 4 O 1.20823 * 119.99534 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00396 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47584 * 184.93304 * 5 3 2 7 7 C 1.36664 * 119.99983 * 95.99446 * 6 5 3 8 8 H 1.07999 * 120.00092 * 220.55434 * 7 6 5 9 9 C 1.39161 * 119.99922 * 40.27304 * 7 6 5 10 10 N 1.31294 * 120.00326 * 209.79638 * 9 7 6 11 11 Si 1.86805 * 119.99724 * 29.80116 * 9 7 6 12 12 H 1.48505 * 109.47040 * 92.77510 * 11 9 7 13 13 H 1.48501 * 109.47168 * 212.77434 * 11 9 7 14 14 H 1.48495 * 109.47041 * 332.77542 * 11 9 7 15 15 C 1.34769 * 120.00302 * 276.00130 * 6 5 3 16 16 O 1.21679 * 119.99845 * 5.47870 * 15 6 5 17 17 C 1.47218 * 120.00716 * 185.48138 * 15 6 5 18 18 C 1.35821 * 118.98877 * 274.35468 * 17 15 6 19 19 C 1.46197 * 119.39392 * 179.74301 * 18 17 15 20 20 C 1.39663 * 121.78401 * 180.21317 * 19 18 17 21 21 C 1.37766 * 119.53803 * 180.28089 * 20 19 18 22 22 C 1.38847 * 120.70423 * 359.97438 * 21 20 19 23 23 C 1.37884 * 120.74552 * 0.02562 * 22 21 20 24 24 C 1.39300 * 119.60498 * 359.97438 * 23 22 21 25 25 C 1.46963 * 121.76673 * 179.97438 * 24 23 22 26 26 O 1.21746 * 120.27328 * 0.04883 * 25 24 23 27 27 N 1.34737 * 119.45339 * 180.02562 * 25 24 23 28 28 C 1.46504 * 118.95709 * 179.97438 * 27 25 24 29 29 H 1.09003 * 109.47036 * 60.00219 * 1 2 3 30 30 H 1.08997 * 109.46827 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47244 * 299.99969 * 1 2 3 32 32 H 1.09004 * 109.47394 * 64.93496 * 5 3 2 33 33 H 1.09004 * 109.47523 * 304.93920 * 5 3 2 34 34 H 0.97003 * 120.00025 * 0.02562 * 10 9 7 35 35 H 1.08003 * 120.30530 * 359.97296 * 18 17 15 36 36 H 1.07999 * 120.23062 * 0.30336 * 20 19 18 37 37 H 1.08001 * 119.64561 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.62550 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.19753 * 180.02562 * 23 22 21 40 40 H 1.08994 * 109.47058 * 273.01742 * 28 27 25 41 41 H 1.09006 * 109.46595 * 33.01608 * 28 27 25 42 42 H 1.08998 * 109.47332 * 153.01036 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9820 2.6747 0.1192 7 6 4.2992 3.1918 1.3438 8 1 3.9825 4.1903 1.6069 9 6 5.0253 2.4297 2.2541 10 7 4.8535 2.6073 3.5435 11 14 6.2446 1.1541 1.6412 12 1 7.5944 1.7657 1.5447 13 1 6.2852 0.0123 2.5898 14 1 5.8235 0.6702 0.3019 15 6 4.0514 3.4525 -0.9792 16 8 3.6744 3.0231 -2.0535 17 6 4.5835 4.8215 -0.8794 18 6 3.7445 5.8297 -0.5266 19 6 4.2647 7.1918 -0.4194 20 6 3.4478 8.2648 -0.0563 21 6 3.9854 9.5306 0.0249 22 6 5.3287 9.7493 -0.2496 23 6 6.1537 8.7048 -0.6099 24 6 5.6331 7.4158 -0.6988 25 6 6.4690 6.2684 -1.0789 26 8 7.6507 6.4251 -1.3263 27 7 5.9168 5.0415 -1.1510 28 6 6.7599 3.9054 -1.5315 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.9524 0.8590 -0.9301 33 1 3.9597 0.7063 0.8433 34 1 4.2201 3.2695 3.8618 35 1 2.7034 5.6264 -0.3235 36 1 2.4020 8.1032 0.1596 37 1 3.3551 10.3617 0.3052 38 1 5.7320 10.7487 -0.1801 39 1 7.1974 8.8849 -0.8211 40 1 6.7828 3.8177 -2.6177 41 1 7.7719 4.0630 -1.1583 42 1 6.3525 2.9904 -1.1016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353269348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:44 Heat of formation + Delta-G solvation = -89.260298 kcal Electronic energy + Delta-G solvation = -30865.024241 eV Core-core repulsion = 26583.378045 eV Total energy + Delta-G solvation = -4281.646197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.02598 -40.10560 -38.92298 -38.11088 -36.37080 -35.85074 -35.14760 -32.74726 -32.31666 -31.13885 -29.96541 -28.62555 -27.14343 -26.59886 -24.98855 -23.79429 -23.10402 -21.53468 -21.20063 -19.86930 -18.62633 -18.22257 -17.39471 -17.22494 -16.87968 -16.20649 -16.14944 -15.81974 -15.54322 -15.16342 -15.01991 -14.65057 -14.28952 -14.04554 -13.88717 -13.59214 -13.18942 -13.11938 -12.99571 -12.76388 -12.65577 -12.46794 -12.40157 -12.00734 -11.85095 -11.70306 -11.55644 -11.02207 -10.97629 -10.90557 -10.50224 -10.46002 -10.10967 -10.04777 -9.91042 -9.45348 -9.27519 -9.12487 -8.91885 -8.29855 -7.38108 -7.15227 -4.44764 0.91189 1.06787 2.37379 2.56541 2.72852 2.89126 2.99006 3.08608 3.11360 3.17991 3.53791 3.88266 3.95939 4.19907 4.55333 4.67158 4.91123 4.96859 5.01552 5.24158 5.30214 5.34753 5.36116 5.38955 5.42106 5.54469 5.60271 5.63812 5.69407 5.76564 5.80736 5.94090 6.02350 6.07922 6.11722 6.42671 6.50824 6.56213 6.72593 6.77255 6.97523 7.04536 7.44511 7.64537 8.03658 8.15131 8.24102 8.60638 8.73630 9.26254 10.18722 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011934 B = 0.004405 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.621678 B = 6354.412877 C = 7152.819956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.449 3.551 4 O -0.492 6.492 5 C 0.118 3.882 6 N -0.418 5.418 7 C -0.445 4.445 8 H 0.096 0.904 9 C 0.038 3.962 10 N -0.834 5.834 11 Si 1.020 2.980 12 H -0.273 1.273 13 H -0.271 1.271 14 H -0.269 1.269 15 C 0.515 3.485 16 O -0.571 6.571 17 C 0.178 3.822 18 C -0.182 4.182 19 C 0.021 3.979 20 C -0.127 4.127 21 C -0.086 4.086 22 C -0.149 4.149 23 C -0.047 4.047 24 C -0.153 4.153 25 C 0.550 3.450 26 O -0.536 6.536 27 N -0.500 5.500 28 C 0.067 3.933 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.284 0.716 35 H 0.147 0.853 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 2.947 -4.682 6.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.290 3.710 4 O -0.377 6.377 5 C -0.007 4.007 6 N -0.137 5.137 7 C -0.572 4.572 8 H 0.113 0.887 9 C -0.176 4.176 10 N -0.463 5.463 11 Si 0.844 3.156 12 H -0.199 1.199 13 H -0.196 1.196 14 H -0.194 1.194 15 C 0.303 3.697 16 O -0.454 6.454 17 C 0.074 3.926 18 C -0.206 4.206 19 C 0.019 3.981 20 C -0.145 4.145 21 C -0.105 4.105 22 C -0.167 4.167 23 C -0.066 4.066 24 C -0.156 4.156 25 C 0.345 3.655 26 O -0.416 6.416 27 N -0.216 5.216 28 C -0.075 4.075 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.165 0.835 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.017 1.926 -4.802 5.273 hybrid contribution -1.577 1.224 -0.066 1.998 sum -2.595 3.151 -4.868 6.353 Atomic orbital electron populations 1.23145 0.77391 1.02945 1.02241 1.86517 1.22769 1.34307 1.84843 1.24710 0.92845 0.81265 0.72173 1.90607 1.66654 1.36366 1.44077 1.21588 0.86637 0.87442 1.05008 1.43234 1.55505 1.07801 1.07152 1.20428 1.40414 1.05233 0.91098 0.88659 1.26456 0.97245 1.00496 0.93427 1.70735 1.33111 1.28577 1.13879 0.84440 0.77592 0.76876 0.76647 1.19865 1.19638 1.19390 1.17902 0.82769 0.84920 0.84108 1.90760 1.52951 1.73514 1.28183 1.19625 0.82936 0.95225 0.94826 1.21431 1.00228 0.89583 1.09377 1.19032 0.91902 0.93358 0.93828 1.21124 0.99874 0.91762 1.01742 1.21230 0.95254 0.96817 0.97151 1.21076 0.93896 0.98897 1.02831 1.21000 1.00128 0.90551 0.94935 1.19853 0.93547 0.94044 1.08192 1.18077 0.87263 0.82145 0.77982 1.90802 1.15287 1.84242 1.51246 1.44962 1.07935 1.09458 1.59267 1.22079 0.96196 0.87807 1.01381 0.92308 0.88609 0.92225 0.87027 0.86883 0.90461 0.83505 0.85073 0.85685 0.85625 0.84801 0.90922 0.89110 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.32 10.57 -39.26 -0.41 -6.74 16 3 C 0.45 9.20 7.98 36.00 0.29 9.48 16 4 O -0.49 -11.38 15.97 -18.75 -0.30 -11.68 16 5 C 0.12 2.39 3.99 -5.20 -0.02 2.37 16 6 N -0.42 -9.37 1.67 -117.41 -0.20 -9.56 16 7 C -0.45 -10.72 8.70 -15.06 -0.13 -10.85 16 8 H 0.10 2.49 7.21 -52.49 -0.38 2.11 16 9 C 0.04 0.93 5.06 -17.44 -0.09 0.84 16 10 N -0.83 -21.45 13.69 55.51 0.76 -20.69 16 11 Si 1.02 20.64 26.75 -169.99 -4.55 16.10 16 12 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 13 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 14 H -0.27 -4.80 5.64 56.52 0.32 -4.48 16 15 C 0.52 11.55 4.66 -12.62 -0.06 11.49 16 16 O -0.57 -13.63 16.84 5.21 0.09 -13.54 16 17 C 0.18 3.74 5.11 -82.38 -0.42 3.32 16 18 C -0.18 -3.54 9.04 -37.25 -0.34 -3.88 16 19 C 0.02 0.36 5.89 -104.95 -0.62 -0.26 16 20 C -0.13 -1.80 9.87 -39.22 -0.39 -2.19 16 21 C -0.09 -1.04 10.01 -39.53 -0.40 -1.43 16 22 C -0.15 -1.83 10.01 -39.49 -0.40 -2.23 16 23 C -0.05 -0.71 9.65 -39.32 -0.38 -1.09 16 24 C -0.15 -2.75 5.90 -104.75 -0.62 -3.37 16 25 C 0.55 10.97 7.62 -12.74 -0.10 10.87 16 26 O -0.54 -11.23 16.07 5.15 0.08 -11.15 16 27 N -0.50 -10.04 3.04 -120.95 -0.37 -10.41 16 28 C 0.07 1.20 9.90 59.85 0.59 1.79 16 29 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 32 H 0.11 2.05 7.63 -51.93 -0.40 1.65 16 33 H 0.11 2.18 4.72 -51.93 -0.25 1.93 16 34 H 0.28 7.31 8.73 -40.82 -0.36 6.95 16 35 H 0.15 2.79 8.06 -52.48 -0.42 2.37 16 36 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.89 7.77 -52.49 -0.41 1.48 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.09 1.53 7.45 -51.93 -0.39 1.14 16 42 H 0.08 1.53 6.66 -51.93 -0.35 1.18 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -30.81 363.34 -6.20 -37.01 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.78 Total: 8.77 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: -2.00 Total: 16.42 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.20 Total: -40.66 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -0.54 Total: -43.11 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.55 Total: 16.10 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.81 -6.20 -37.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353269348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.254 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds