Wall clock time and date at job start Wed Apr 1 2020 03:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34900 * 116.99677 * 2 1 4 4 O 1.21613 * 120.00299 * 359.97438 * 3 2 1 5 5 C 1.46472 * 119.99574 * 179.97438 * 3 2 1 6 6 C 1.36639 * 125.99444 * 179.97438 * 5 3 2 7 7 C 1.40315 * 106.70105 * 179.97438 * 6 5 3 8 8 C 1.35166 * 107.12762 * 0.02562 * 7 6 5 9 9 C 1.50694 * 125.60930 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47369 * 89.99827 * 9 8 7 11 11 C 1.34780 * 120.00270 * 180.02562 * 10 9 8 12 12 O 1.21581 * 119.99559 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00283 * 179.97438 * 11 10 9 14 14 C 1.39239 * 120.00403 * 175.71086 * 13 11 10 15 15 C 1.39482 * 119.83735 * 215.01946 * 14 13 11 16 16 C 1.36372 * 120.16796 * 179.75652 * 15 14 13 17 17 C 1.40860 * 119.82854 * 0.53947 * 16 15 14 18 18 C 1.41161 * 120.16522 * 179.69300 * 17 16 15 19 19 H 1.07996 * 120.00630 * 214.80690 * 18 17 16 20 20 C 1.39892 * 119.99511 * 34.80740 * 18 17 16 21 21 N 1.30874 * 120.00278 * 355.55666 * 20 18 17 22 22 Si 1.86807 * 119.99984 * 175.55849 * 20 18 17 23 23 H 1.48497 * 109.47330 * 89.99443 * 22 20 18 24 24 H 1.48499 * 109.47327 * 210.00027 * 22 20 18 25 25 H 1.48503 * 109.46840 * 329.99844 * 22 20 18 26 26 C 1.40873 * 119.67856 * 359.72030 * 17 16 15 27 27 C 1.36374 * 119.82054 * 359.97438 * 26 17 16 28 28 O 1.33916 * 108.78117 * 0.25945 * 8 7 6 29 29 H 1.09000 * 109.47306 * 60.00337 * 1 2 3 30 30 H 1.09002 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47475 * 300.00389 * 1 2 3 32 32 H 1.07998 * 126.65190 * 0.02562 * 6 5 3 33 33 H 1.07997 * 126.43253 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.47143 * 209.99852 * 9 8 7 35 35 H 1.08993 * 109.47088 * 329.99574 * 9 8 7 36 36 H 0.96999 * 120.00147 * 359.97438 * 10 9 8 37 37 H 0.97005 * 119.99985 * 355.70848 * 13 11 10 38 38 H 1.07994 * 119.90999 * 0.02562 * 15 14 13 39 39 H 1.07995 * 120.08230 * 180.25549 * 16 15 14 40 40 H 0.97000 * 120.00320 * 179.97438 * 21 20 18 41 41 H 1.07992 * 120.09033 * 179.97438 * 26 17 16 42 42 H 1.08006 * 119.91621 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5271 1.2786 0.0006 6 6 4.2712 2.4246 0.0001 7 6 5.6180 2.0310 0.0016 8 6 5.6376 0.6794 0.0022 9 6 6.8754 -0.1801 0.0043 10 7 7.2747 -0.4580 1.3862 11 6 8.3631 -1.2132 1.6343 12 8 9.0138 -1.6635 0.7112 13 7 8.7307 -1.4685 2.9055 14 6 9.8011 -2.3210 3.1630 15 6 9.7719 -3.1531 4.2820 16 6 10.8143 -3.9943 4.5379 17 6 11.9275 -4.0131 3.6750 18 6 13.0133 -4.8764 3.9367 19 1 14.0202 -4.5642 3.7021 20 6 12.7851 -6.1364 4.5000 21 7 11.5763 -6.4809 4.8647 22 14 14.2056 -7.3271 4.7319 23 1 14.8164 -7.1148 6.0687 24 1 13.7042 -8.7213 4.6325 25 1 15.2257 -7.0917 3.6786 26 6 11.9523 -3.1659 2.5498 27 6 10.8996 -2.3346 2.3035 28 8 4.3762 0.2299 -0.0045 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.8956 3.4372 -0.0003 33 1 6.4774 2.6850 0.0021 34 1 6.6669 -1.1186 -0.5094 35 1 7.6821 0.3434 -0.5087 36 1 6.7562 -0.0978 2.1226 37 1 8.2496 -1.0582 3.6412 38 1 8.9196 -3.1343 4.9450 39 1 10.7884 -4.6410 5.4024 40 1 11.4179 -7.3547 5.2550 41 1 12.8026 -3.1746 1.8841 42 1 10.9168 -1.6847 1.4411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359137489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:29 Heat of formation + Delta-G solvation = -84.181509 kcal Electronic energy + Delta-G solvation = -27617.043594 eV Core-core repulsion = 23335.617631 eV Total energy + Delta-G solvation = -4281.425964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.96926 -41.44797 -41.32539 -39.25187 -37.76125 -36.50450 -35.89249 -34.69436 -34.26684 -32.13091 -31.42113 -30.61313 -29.17240 -27.57321 -26.39395 -24.06095 -23.37696 -22.86234 -22.59506 -21.74115 -21.56843 -19.76524 -19.47581 -19.12259 -18.45214 -18.16083 -17.95556 -17.13006 -16.94936 -16.73393 -16.42697 -16.05228 -15.65331 -15.29274 -15.11260 -14.94067 -14.48604 -14.38744 -14.32985 -14.19795 -14.10058 -13.93450 -13.54913 -13.29471 -13.19147 -13.12344 -12.82386 -12.74796 -12.45618 -12.13494 -11.95767 -11.82919 -11.37861 -11.25738 -11.20606 -11.03860 -10.64838 -10.22220 -9.92922 -9.41869 -8.66031 -8.46760 -6.28951 -0.45934 0.85152 0.94424 1.11261 1.19304 1.41314 1.48920 1.55843 1.66552 1.74452 1.95876 2.19928 2.27022 2.84688 3.26184 3.37938 3.72204 3.73133 3.74243 4.19780 4.23399 4.29027 4.33801 4.42710 4.45021 4.58352 4.64750 4.66609 4.79684 4.97230 5.04026 5.16105 5.18099 5.19950 5.29262 5.36045 5.47702 5.67596 5.72585 5.82720 6.05862 6.13468 6.25703 6.40847 6.44042 6.72586 7.00777 7.04927 7.10040 7.61739 8.45776 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.024436 B = 0.001667 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.553301 B =16796.352465 C =17486.554481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.554 3.446 4 O -0.507 6.507 5 C -0.084 4.084 6 C -0.093 4.093 7 C -0.181 4.181 8 C 0.014 3.986 9 C 0.219 3.781 10 N -0.729 5.729 11 C 0.699 3.301 12 O -0.617 6.617 13 N -0.657 5.657 14 C 0.042 3.958 15 C -0.121 4.121 16 C -0.158 4.158 17 C 0.064 3.936 18 C -0.498 4.498 19 H 0.072 0.928 20 C 0.027 3.973 21 N -0.843 5.843 22 Si 0.987 3.013 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.263 1.263 26 C -0.218 4.218 27 C -0.097 4.097 28 O -0.160 6.160 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.071 0.929 32 H 0.185 0.815 33 H 0.193 0.807 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.413 0.587 37 H 0.415 0.585 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.284 0.716 41 H 0.096 0.904 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.081 15.683 -6.336 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.400 3.600 4 O -0.398 6.398 5 C -0.135 4.135 6 C -0.112 4.112 7 C -0.200 4.200 8 C -0.038 4.038 9 C 0.095 3.905 10 N -0.387 5.387 11 C 0.400 3.600 12 O -0.497 6.497 13 N -0.305 5.305 14 C -0.053 4.053 15 C -0.141 4.141 16 C -0.178 4.178 17 C 0.061 3.939 18 C -0.529 4.529 19 H 0.090 0.910 20 C -0.184 4.184 21 N -0.471 5.471 22 Si 0.808 3.192 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.187 1.187 26 C -0.238 4.238 27 C -0.117 4.117 28 O -0.055 6.055 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.089 0.911 32 H 0.203 0.797 33 H 0.211 0.789 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.249 0.751 37 H 0.252 0.748 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.025 15.062 -7.098 25.282 hybrid contribution -0.170 -0.296 0.654 0.738 sum -19.196 14.765 -6.444 25.060 Atomic orbital electron populations 1.23704 0.73239 1.06206 1.03341 1.86679 1.26152 1.31312 1.83486 1.19303 0.85801 0.82202 0.72731 1.90935 1.64832 1.36394 1.47628 1.20889 0.87937 0.86807 1.17837 1.22356 0.92368 0.99227 0.97255 1.22064 0.98419 0.93648 1.05914 1.22815 0.83075 0.94493 1.03459 1.19554 0.89118 0.98618 0.83193 1.44831 1.28976 1.56016 1.08921 1.16001 0.81226 0.79442 0.83317 1.90914 1.56586 1.57635 1.44566 1.41849 1.33451 1.48730 1.06433 1.17072 0.89013 0.99072 1.00103 1.20527 0.99200 0.96234 0.98163 1.21148 0.95705 1.00034 1.00949 1.18044 0.94219 0.91325 0.90279 1.19711 0.94636 1.00405 1.38182 0.90983 1.26712 0.99290 1.00348 0.92097 1.69828 1.22808 1.21818 1.32672 0.85125 0.77814 0.76661 0.79585 1.18457 1.19539 1.18695 1.20930 0.99795 1.03950 0.99099 1.20552 0.92473 0.99635 0.99022 1.84120 1.15890 1.35228 1.70294 0.90994 0.85032 0.91052 0.79748 0.78945 0.90273 0.86301 0.75077 0.74796 0.85859 0.86439 0.90591 0.88597 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 113.37 1.20 1.49 16 2 O -0.36 -6.64 10.58 -56.76 -0.60 -7.24 16 3 C 0.55 11.06 7.93 69.97 0.55 11.61 16 4 O -0.51 -11.39 16.66 19.46 0.32 -11.06 16 5 C -0.08 -1.56 7.18 24.04 0.17 -1.38 16 6 C -0.09 -1.26 10.62 22.40 0.24 -1.02 16 7 C -0.18 -2.10 10.77 22.07 0.24 -1.86 16 8 C 0.01 0.22 6.68 24.98 0.17 0.39 16 9 C 0.22 3.88 6.20 85.63 0.53 4.41 16 10 N -0.73 -14.88 5.55 -482.32 -2.68 -17.56 16 11 C 0.70 21.99 8.40 179.06 1.50 23.49 16 12 O -0.62 -25.25 13.76 -3.97 -0.05 -25.30 16 13 N -0.66 -20.74 5.31 -316.79 -1.68 -22.42 16 14 C 0.04 1.77 6.31 38.57 0.24 2.01 16 15 C -0.12 -5.34 9.90 22.13 0.22 -5.12 16 16 C -0.16 -8.24 8.61 22.48 0.19 -8.04 16 17 C 0.06 3.52 5.55 -21.28 -0.12 3.40 16 18 C -0.50 -27.51 9.02 23.39 0.21 -27.30 16 19 H 0.07 3.84 7.85 -2.91 -0.02 3.82 16 20 C 0.03 1.39 5.42 85.24 0.46 1.86 16 21 N -0.84 -44.80 10.60 21.82 0.23 -44.57 16 22 Si 0.99 39.42 29.56 68.60 2.03 41.45 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 24 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 C -0.22 -11.28 9.74 22.48 0.22 -11.06 16 27 C -0.10 -4.59 8.61 22.14 0.19 -4.39 16 28 O -0.16 -3.14 10.67 -4.93 -0.05 -3.19 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.41 6.02 8.48 -92.71 -0.79 5.24 16 37 H 0.42 9.47 8.83 -92.70 -0.82 8.65 16 38 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 39 H 0.12 6.39 6.13 -2.91 -0.02 6.37 16 40 H 0.28 13.71 8.30 -92.71 -0.77 12.94 16 41 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 42 H 0.11 5.24 6.22 -2.91 -0.02 5.22 16 Total: -1.00 -73.22 374.25 3.23 -69.99 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -0.50 Total: 31.44 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 6.22 Total: -11.53 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -4.13 Total: -84.55 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -0.38 Total: -46.80 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -73.22 3.23 -69.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359137489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.192 kcal (2) G-P(sol) polarization free energy of solvation -73.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds