Wall clock time and date at job start Wed Apr 1 2020 01:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 O 1.21273 * 120.00521 * 240.00093 * 4 2 1 6 6 N 1.34786 * 119.99672 * 60.00403 * 4 2 1 7 7 C 1.47069 * 136.05538 * 359.62984 * 6 4 2 8 8 C 1.53752 * 87.88372 * 152.96497 * 7 6 4 9 9 O 1.42905 * 114.39194 * 272.67204 * 8 7 6 10 10 C 1.50700 * 114.26789 * 139.79141 * 8 7 6 11 11 H 1.07997 * 119.99925 * 266.47041 * 10 8 7 12 12 C 1.37887 * 120.00111 * 86.46961 * 10 8 7 13 13 N 1.31517 * 119.99886 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00101 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46959 * 90.00203 * 14 12 10 16 16 H 1.48500 * 109.47375 * 210.00131 * 14 12 10 17 17 H 1.48502 * 109.47240 * 330.00160 * 14 12 10 18 18 C 1.47062 * 136.05402 * 179.97438 * 6 4 2 19 19 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 20 20 C 1.34530 * 124.46000 * 59.69218 * 19 2 1 21 21 O 1.21444 * 125.70827 * 0.04089 * 20 19 2 22 22 C 1.47817 * 108.58023 * 179.90825 * 20 19 2 23 23 C 1.38565 * 134.29890 * 180.10965 * 22 20 19 24 24 C 1.38606 * 119.71936 * 180.27149 * 23 22 20 25 25 C 1.38225 * 120.46116 * 359.97438 * 24 23 22 26 26 C 1.38616 * 120.46147 * 359.97438 * 25 24 23 27 27 C 1.38564 * 119.71513 * 0.02562 * 26 25 24 28 28 C 1.34522 * 124.46000 * 240.00089 * 19 2 1 29 29 O 1.21443 * 125.71026 * 359.96259 * 28 19 2 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 1.08997 * 113.46286 * 267.69403 * 7 6 4 34 34 H 1.08994 * 113.47205 * 38.13236 * 7 6 4 35 35 H 0.96705 * 114.00002 * 273.58717 * 9 8 7 36 36 H 0.96993 * 120.00128 * 179.97438 * 13 12 10 37 37 H 1.08995 * 113.46840 * 321.86323 * 18 6 4 38 38 H 1.09004 * 113.46577 * 92.24739 * 18 6 4 39 39 H 1.08000 * 120.13602 * 0.24527 * 23 22 20 40 40 H 1.07998 * 119.77138 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.77556 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.14525 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 0.9105 0.8649 -2.9893 8 6 1.8016 0.8257 -4.2417 9 8 2.9905 1.6127 -4.1449 10 6 1.0583 1.0264 -5.5372 11 1 0.7079 0.1717 -6.0967 12 6 0.8256 2.3013 -6.0082 13 7 1.2527 3.3421 -5.3271 14 14 -0.0963 2.5501 -7.6136 15 1 -1.5517 2.6541 -7.3376 16 1 0.3742 3.7982 -8.2664 17 1 0.1557 1.3957 -8.5132 18 6 1.9866 -0.6448 -3.8433 19 7 2.0184 -0.6906 1.1962 20 6 1.7443 -1.9721 1.5005 21 8 1.0640 -2.7283 0.8370 22 6 2.4125 -2.3065 2.7759 23 6 2.4877 -3.4472 3.5590 24 6 3.2168 -3.4248 4.7375 25 6 3.8692 -2.2732 5.1361 26 6 3.8038 -1.1249 4.3625 27 6 3.0786 -1.1326 3.1818 28 6 2.7949 -0.1251 2.1379 29 8 3.1967 1.0209 2.1310 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.1282 0.6005 -3.1873 34 1 1.0094 1.7846 -2.4129 35 1 2.8709 2.5387 -4.3966 36 1 1.0894 4.2389 -5.6585 37 1 3.0020 -1.0109 -3.9943 38 1 1.2322 -1.3083 -4.2663 39 1 1.9799 -4.3498 3.2525 40 1 3.2763 -4.3135 5.3483 41 1 4.4346 -2.2683 6.0563 42 1 4.3159 -0.2281 4.6785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412259797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:44 Heat of formation + Delta-G solvation = -48.400617 kcal Electronic energy + Delta-G solvation = -30104.898766 eV Core-core repulsion = 25825.024378 eV Total energy + Delta-G solvation = -4279.874388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.49052 -39.78489 -38.72335 -38.62073 -37.38244 -35.80208 -34.12255 -33.46832 -32.22143 -31.45220 -30.45296 -28.49527 -25.68892 -25.24729 -25.18502 -25.01588 -22.94043 -22.37011 -20.61324 -19.73106 -18.55549 -17.98513 -17.54345 -17.17423 -16.75729 -16.50208 -15.97114 -15.47373 -15.32160 -15.08189 -14.90721 -14.64153 -14.41548 -14.31061 -14.09826 -13.94952 -13.54190 -13.16491 -12.89158 -12.70168 -12.64994 -12.47202 -12.32477 -11.98268 -11.88933 -11.66718 -11.57868 -11.09471 -11.04472 -10.59131 -10.51933 -10.33504 -10.28705 -10.15959 -9.62355 -9.54142 -9.50483 -9.15720 -8.80953 -8.43688 -7.92666 -6.43534 -4.53948 -0.12704 0.65661 1.86195 2.12286 2.88363 3.01518 3.12576 3.21222 3.24422 3.31524 3.40875 3.55074 4.15340 4.16427 4.30926 4.51758 4.65802 4.73018 4.81267 4.89376 4.90340 4.99901 5.09747 5.19033 5.43403 5.52855 5.57864 5.64034 5.71775 5.79120 5.83500 5.88902 6.04168 6.12860 6.24828 6.35024 6.41748 6.53730 6.61249 6.65478 7.06177 7.17238 7.59794 7.62565 7.76635 8.38033 8.49898 8.59959 9.17489 9.45739 10.63233 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.027628 B = 0.002593 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.236075 B =10795.987330 C =11141.224192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 H 0.131 0.869 4 C 0.532 3.468 5 O -0.548 6.548 6 N -0.629 5.629 7 C 0.067 3.933 8 C 0.242 3.758 9 O -0.570 6.570 10 C -0.533 4.533 11 H 0.073 0.927 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.910 3.090 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.270 1.270 18 C 0.110 3.890 19 N -0.559 5.559 20 C 0.579 3.421 21 O -0.445 6.445 22 C -0.129 4.129 23 C -0.048 4.048 24 C -0.097 4.097 25 C -0.101 4.101 26 C -0.046 4.046 27 C -0.136 4.136 28 C 0.576 3.424 29 O -0.464 6.464 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.394 0.606 36 H 0.274 0.726 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.117 -7.639 19.862 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.023 3.977 3 H 0.149 0.851 4 C 0.319 3.681 5 O -0.427 6.427 6 N -0.362 5.362 7 C -0.056 4.056 8 C 0.200 3.800 9 O -0.384 6.384 10 C -0.571 4.571 11 H 0.091 0.909 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.737 3.263 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.195 1.195 18 C -0.012 4.012 19 N -0.301 5.301 20 C 0.368 3.632 21 O -0.314 6.314 22 C -0.133 4.133 23 C -0.067 4.067 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.065 4.065 27 C -0.140 4.140 28 C 0.365 3.635 29 O -0.335 6.335 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.251 0.749 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.379 -8.329 19.858 21.537 hybrid contribution -0.745 0.844 -0.995 1.502 sum -0.366 -7.485 18.863 20.297 Atomic orbital electron populations 1.22154 0.91106 1.04541 1.04204 1.21121 0.96887 0.97782 0.81874 0.85147 1.19710 0.81229 0.84128 0.83067 1.90667 1.39572 1.26610 1.85823 1.49595 1.50526 1.31897 1.04178 1.24375 0.97082 0.87509 0.96588 1.19564 0.83146 0.86461 0.90873 1.86058 1.33529 1.28146 1.90623 1.21417 1.36072 0.93217 1.06424 0.90861 1.25088 0.94732 0.95553 0.97702 1.69257 1.46390 0.99068 1.39089 0.86295 0.79640 0.77990 0.82401 1.20270 1.20874 1.19506 1.23358 1.00942 0.99421 0.77450 1.46245 1.47908 1.13775 1.22124 1.18189 0.79613 0.80838 0.84606 1.90781 1.34825 1.51692 1.54123 1.20649 1.00695 0.95740 0.96200 1.20806 0.96510 0.96733 0.92666 1.21445 0.95636 0.98787 0.95653 1.21433 0.98511 0.92179 0.99760 1.20800 0.95266 0.99185 0.91223 1.20569 1.01731 0.94683 0.97007 1.18353 0.76749 0.86745 0.81642 1.90811 1.49222 1.17183 1.76322 0.89157 0.90486 0.91057 0.89694 0.91507 0.74896 0.91512 0.91483 0.89476 0.84033 0.84140 0.84134 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.08 37.16 0.34 -2.00 16 2 C 0.13 2.22 3.08 -69.08 -0.21 2.00 16 3 H 0.13 2.21 7.58 -51.93 -0.39 1.81 16 4 C 0.53 11.29 7.13 -10.98 -0.08 11.21 16 5 O -0.55 -13.24 15.71 -8.12 -0.13 -13.37 16 6 N -0.63 -13.40 3.64 -185.05 -0.67 -14.07 16 7 C 0.07 1.40 6.15 -8.36 -0.05 1.35 16 8 C 0.24 5.72 1.58 -91.13 -0.14 5.58 16 9 O -0.57 -14.67 13.55 -35.23 -0.48 -15.15 16 10 C -0.53 -13.10 8.70 -34.44 -0.30 -13.40 16 11 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 12 C 0.07 1.75 5.39 -17.82 -0.10 1.66 16 13 N -0.90 -22.35 11.01 55.43 0.61 -21.74 16 14 Si 0.91 19.14 29.54 -169.99 -5.02 14.12 16 15 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 C 0.11 2.42 8.02 -8.51 -0.07 2.36 16 19 N -0.56 -9.29 2.31 -111.74 -0.26 -9.55 16 20 C 0.58 9.49 6.67 -12.45 -0.08 9.40 16 21 O -0.44 -8.34 15.57 -8.27 -0.13 -8.47 16 22 C -0.13 -1.64 6.41 -104.83 -0.67 -2.31 16 23 C -0.05 -0.44 10.09 -39.33 -0.40 -0.84 16 24 C -0.10 -0.60 10.03 -39.45 -0.40 -1.00 16 25 C -0.10 -0.61 10.04 -39.45 -0.40 -1.01 16 26 C -0.05 -0.40 10.09 -39.32 -0.40 -0.80 16 27 C -0.14 -1.68 6.41 -104.83 -0.67 -2.35 16 28 C 0.58 8.94 8.02 -12.45 -0.10 8.84 16 29 O -0.46 -8.03 17.43 5.42 0.09 -7.94 16 30 H 0.09 1.27 6.33 -51.93 -0.33 0.94 16 31 H 0.08 1.19 6.81 -51.93 -0.35 0.83 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.65 8.06 -51.93 -0.42 1.23 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.39 10.22 6.32 45.56 0.29 10.51 16 36 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 39 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -32.02 362.96 -8.37 -40.38 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -4.13 Total: 11.59 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: -3.72 Total: 18.71 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.32 Total: -45.36 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.64 Total: -44.93 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.02 -8.37 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412259797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.016 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds