Wall clock time and date at job start Wed Apr 1 2020 02:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21251 * 119.99860 * 2 1 4 4 C 1.47178 * 120.00434 * 179.97438 * 2 1 3 5 5 C 1.39881 * 120.14260 * 359.97438 * 4 2 1 6 6 C 1.37896 * 119.93661 * 180.02562 * 5 4 2 7 7 C 1.38330 * 120.23451 * 359.74463 * 6 5 4 8 8 C 1.38846 * 120.29508 * 0.51598 * 7 6 5 9 9 O 1.35912 * 119.97006 * 179.76622 * 8 7 6 10 10 C 1.42898 * 117.00151 * 359.71693 * 9 8 7 11 11 C 1.50703 * 109.47171 * 180.02562 * 10 9 8 12 12 C 1.35311 * 126.66824 * 89.71617 * 11 10 9 13 13 C 1.42268 * 103.92610 * 179.87761 * 12 11 10 14 14 C 1.48321 * 126.94402 * 180.11355 * 13 12 11 15 15 O 1.21501 * 120.00081 * 0.30260 * 14 13 12 16 16 N 1.34776 * 120.00585 * 180.29935 * 14 13 12 17 17 C 1.46495 * 120.00164 * 180.02562 * 16 14 13 18 18 C 1.50709 * 109.46989 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00145 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99968 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99742 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47066 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46986 * 119.99865 * 22 20 18 25 25 H 1.48496 * 109.47315 * 240.00425 * 22 20 18 26 26 N 1.30992 * 106.11905 * 0.38736 * 13 12 11 27 27 O 1.20903 * 111.44058 * 359.74825 * 26 13 12 28 28 C 1.38425 * 120.05731 * 359.48405 * 8 7 6 29 29 H 1.09005 * 109.46583 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47537 * 300.00472 * 1 2 3 31 31 H 1.08995 * 109.46540 * 60.00631 * 1 2 3 32 32 H 1.07996 * 120.03447 * 0.02562 * 5 4 2 33 33 H 1.08003 * 119.87775 * 180.02562 * 6 5 4 34 34 H 1.08006 * 119.84806 * 180.27517 * 7 6 5 35 35 H 1.09002 * 109.47259 * 300.00539 * 10 9 8 36 36 H 1.09001 * 109.47074 * 60.00560 * 10 9 8 37 37 H 1.08003 * 128.03746 * 359.97438 * 12 11 10 38 38 H 0.96998 * 119.99639 * 0.02562 * 16 14 13 39 39 H 1.08998 * 109.47608 * 299.99572 * 17 16 14 40 40 H 1.08993 * 109.47680 * 60.00106 * 17 16 14 41 41 H 0.96999 * 119.99688 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.11600 * 180.23458 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2745 0.0006 5 6 1.5467 -2.4877 0.0017 6 6 2.2405 -3.6794 0.0027 7 6 3.6238 -3.6800 -0.0026 8 6 4.3248 -2.4815 0.0017 9 8 5.6839 -2.4898 0.0013 10 6 6.3249 -3.7669 0.0025 11 6 7.8201 -3.5786 0.0024 12 6 8.6211 -3.4713 1.0876 13 6 9.9236 -3.3135 0.5376 14 6 11.1939 -3.1526 1.2861 15 8 11.1873 -3.1525 2.5011 16 7 12.3557 -3.0066 0.6187 17 6 13.6104 -2.8484 1.3581 18 6 14.7522 -2.7044 0.3850 19 1 14.5621 -2.7280 -0.6778 20 6 16.0394 -2.5415 0.8518 21 7 16.2707 -2.5123 2.1461 22 14 17.4546 -2.3638 -0.3543 23 1 16.9328 -2.4302 -1.7431 24 1 18.1261 -1.0567 -0.1403 25 1 18.4299 -3.4626 -0.1385 26 7 9.7737 -3.3329 -0.7636 27 8 8.6140 -3.4791 -1.0727 28 6 3.6406 -1.2781 0.0006 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 0.4667 -2.4912 0.0017 33 1 1.7020 -4.6156 0.0031 34 1 4.1610 -4.6170 -0.0062 35 1 6.0288 -4.3212 0.8931 36 1 6.0283 -4.3231 -0.8868 37 1 8.3377 -3.5004 2.1294 38 1 12.3610 -3.0064 -0.3513 39 1 13.5532 -1.9583 1.9847 40 1 13.7755 -3.7242 1.9855 41 1 17.1763 -2.3980 2.4744 42 1 4.1849 -0.3453 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427612152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:14 Heat of formation + Delta-G solvation = -17.397696 kcal Electronic energy + Delta-G solvation = -27227.311720 eV Core-core repulsion = 22948.781719 eV Total energy + Delta-G solvation = -4278.530000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.17348 -40.91066 -39.67579 -38.83878 -37.68530 -34.41316 -34.06636 -33.19826 -32.30811 -32.20872 -31.22115 -29.42598 -27.67668 -27.55094 -24.69565 -24.23654 -22.97472 -22.86472 -22.00995 -20.56359 -19.65349 -18.60022 -18.16097 -17.78688 -16.97308 -16.74392 -16.55825 -16.32838 -16.03610 -15.74510 -15.44571 -15.26923 -15.09221 -14.43698 -14.41481 -14.26976 -14.13960 -13.78390 -13.39539 -13.12409 -13.01363 -12.83260 -12.60959 -12.28831 -12.05379 -12.00857 -11.91259 -11.56469 -11.40117 -10.99236 -10.95039 -10.40317 -10.37923 -10.28961 -9.83717 -9.60832 -9.60225 -9.42891 -8.82539 -8.80788 -8.04498 -6.20656 -4.27781 0.08856 0.85341 0.94500 1.55957 1.89772 2.44515 2.99895 3.22854 3.23363 3.29816 3.33398 3.53301 3.61878 3.62904 3.98293 4.17548 4.28018 4.34254 4.35607 4.41249 4.46701 4.54345 4.73553 4.75896 4.88617 4.89294 4.90304 5.10828 5.15965 5.20774 5.35379 5.38093 5.46936 5.66698 5.74649 5.76370 5.79101 6.05681 6.78439 7.01872 7.16342 7.22069 7.41035 7.58373 7.88033 7.93871 8.45726 8.64371 8.88261 9.38465 10.89588 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.001561 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.018389 B =17934.190400 C =18334.506139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.394 3.606 3 O -0.452 6.452 4 C -0.134 4.134 5 C -0.113 4.113 6 C -0.091 4.091 7 C -0.179 4.179 8 C 0.123 3.877 9 O -0.306 6.306 10 C 0.149 3.851 11 C -0.061 4.061 12 C -0.143 4.143 13 C -0.016 4.016 14 C 0.577 3.423 15 O -0.536 6.536 16 N -0.689 5.689 17 C 0.247 3.753 18 C -0.545 4.545 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.281 1.281 26 N -0.319 5.319 27 O 0.131 5.869 28 C -0.091 4.091 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.184 0.816 38 H 0.398 0.602 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.266 0.734 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.625 -4.126 -5.952 36.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.272 3.728 3 O -0.327 6.327 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.109 4.109 7 C -0.198 4.198 8 C 0.078 3.922 9 O -0.219 6.219 10 C 0.073 3.927 11 C -0.124 4.124 12 C -0.165 4.165 13 C -0.175 4.175 14 C 0.358 3.642 15 O -0.413 6.413 16 N -0.337 5.337 17 C 0.127 3.873 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 N -0.018 5.018 27 O 0.052 5.948 28 C -0.110 4.110 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.202 0.798 38 H 0.232 0.768 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -34.030 -3.265 -5.911 34.693 hybrid contribution 0.493 -0.285 -0.271 0.630 sum -33.537 -3.550 -6.181 34.286 Atomic orbital electron populations 1.22239 0.93355 1.04971 1.05190 1.22516 0.91791 0.87405 0.71101 1.90581 1.72058 1.34286 1.35734 1.20326 0.93268 0.95236 1.04636 1.21431 1.00327 0.91272 1.00102 1.20944 0.93318 0.98435 0.98184 1.21567 0.95745 0.97220 1.05221 1.18808 0.82109 0.93981 0.97276 1.86192 1.16326 1.30749 1.88670 1.20825 0.82976 0.84539 1.04339 1.23550 0.94264 1.08184 0.86395 1.22552 0.90191 1.02296 1.01431 1.23989 0.97754 1.06089 0.89710 1.16941 0.81629 0.79054 0.86555 1.90771 1.86051 1.52080 1.12406 1.46445 1.07478 1.68862 1.10905 1.19281 0.77655 0.97927 0.92428 1.21243 0.91556 1.52467 0.93077 0.91659 1.24947 0.98904 0.94586 0.95486 1.69983 1.21504 1.48350 1.12376 0.86316 0.81627 0.77850 0.80887 1.19561 1.20720 1.20723 1.74221 0.96839 1.14690 1.16072 1.84800 1.12060 1.64913 1.32982 1.20701 0.92851 0.97245 1.00160 0.89626 0.88564 0.88586 0.84551 0.84807 0.84598 0.88002 0.89024 0.79850 0.76831 0.94909 0.94902 0.92406 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.67 10.19 36.01 0.37 -0.30 16 2 C 0.39 2.95 7.23 -30.68 -0.22 2.73 16 3 O -0.45 -5.22 17.09 5.58 0.10 -5.13 16 4 C -0.13 -0.97 5.87 -105.08 -0.62 -1.58 16 5 C -0.11 -0.52 9.45 -39.09 -0.37 -0.89 16 6 C -0.09 -0.39 10.02 -39.67 -0.40 -0.79 16 7 C -0.18 -0.99 9.03 -39.32 -0.36 -1.34 16 8 C 0.12 1.01 6.68 -39.29 -0.26 0.75 16 9 O -0.31 -2.90 10.12 -19.46 -0.20 -3.10 16 10 C 0.15 1.04 5.29 36.01 0.19 1.23 16 11 C -0.06 -0.67 7.10 -35.35 -0.25 -0.92 16 12 C -0.14 -1.90 10.92 -39.08 -0.43 -2.33 16 13 C -0.02 -0.28 7.19 -82.53 -0.59 -0.87 16 14 C 0.58 12.37 7.85 -12.11 -0.10 12.28 16 15 O -0.54 -13.01 16.95 5.37 0.09 -12.92 16 16 N -0.69 -15.55 5.55 -62.28 -0.35 -15.90 16 17 C 0.25 6.65 5.43 -5.19 -0.03 6.62 16 18 C -0.55 -15.06 9.28 -34.43 -0.32 -15.38 16 19 H 0.07 1.72 7.60 -52.49 -0.40 1.32 16 20 C 0.06 1.81 5.46 -17.81 -0.10 1.71 16 21 N -0.88 -26.06 13.29 55.43 0.74 -25.33 16 22 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 N -0.32 -5.14 11.84 33.29 0.39 -4.75 16 27 O 0.13 1.74 11.18 17.24 0.19 1.93 16 28 C -0.09 -0.82 9.54 -38.94 -0.37 -1.19 16 29 H 0.08 0.09 5.60 -51.93 -0.29 -0.21 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.14 0.22 5.92 -52.49 -0.31 -0.09 16 33 H 0.13 0.23 8.06 -52.48 -0.42 -0.19 16 34 H 0.14 0.42 6.28 -52.48 -0.33 0.09 16 35 H 0.10 0.44 7.67 -51.93 -0.40 0.04 16 36 H 0.09 0.41 7.64 -51.93 -0.40 0.02 16 37 H 0.18 2.10 8.06 -52.48 -0.42 1.68 16 38 H 0.40 8.23 8.08 -40.82 -0.33 7.90 16 39 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.14 1.47 7.65 -52.49 -0.40 1.07 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -35.53 376.82 -6.75 -42.28 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.53 Total: 1.44 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -3.85 Total: -0.29 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.79 Total: -45.97 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.18 Total: -19.22 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.53 -6.75 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427612152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.884 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds