Wall clock time and date at job start Wed Apr 1 2020 02:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21251 * 119.99860 * 2 1 4 4 C 1.47178 * 120.00434 * 179.97438 * 2 1 3 5 5 C 1.39881 * 120.14260 * 359.97438 * 4 2 1 6 6 C 1.37896 * 119.93661 * 180.02562 * 5 4 2 7 7 C 1.38330 * 120.23451 * 359.74463 * 6 5 4 8 8 C 1.38846 * 120.29508 * 0.51598 * 7 6 5 9 9 O 1.35912 * 119.97006 * 179.76622 * 8 7 6 10 10 C 1.42898 * 117.00151 * 359.71693 * 9 8 7 11 11 C 1.50703 * 109.47171 * 180.02562 * 10 9 8 12 12 C 1.35311 * 126.66824 * 89.71617 * 11 10 9 13 13 C 1.42268 * 103.92610 * 179.87761 * 12 11 10 14 14 C 1.48321 * 126.94402 * 180.11355 * 13 12 11 15 15 O 1.21501 * 120.00081 * 0.30260 * 14 13 12 16 16 N 1.34776 * 120.00585 * 180.29935 * 14 13 12 17 17 C 1.46495 * 120.00164 * 180.02562 * 16 14 13 18 18 C 1.50709 * 109.46989 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00145 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99968 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99742 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00015 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47066 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46986 * 119.99865 * 22 20 18 25 25 H 1.48496 * 109.47315 * 240.00425 * 22 20 18 26 26 N 1.30992 * 106.11905 * 0.38736 * 13 12 11 27 27 O 1.20903 * 111.44058 * 359.74825 * 26 13 12 28 28 C 1.38425 * 120.05731 * 359.48405 * 8 7 6 29 29 H 1.09005 * 109.46583 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47537 * 300.00472 * 1 2 3 31 31 H 1.08995 * 109.46540 * 60.00631 * 1 2 3 32 32 H 1.07996 * 120.03447 * 0.02562 * 5 4 2 33 33 H 1.08003 * 119.87775 * 180.02562 * 6 5 4 34 34 H 1.08006 * 119.84806 * 180.27517 * 7 6 5 35 35 H 1.09002 * 109.47259 * 300.00539 * 10 9 8 36 36 H 1.09001 * 109.47074 * 60.00560 * 10 9 8 37 37 H 1.08003 * 128.03746 * 359.97438 * 12 11 10 38 38 H 0.96998 * 119.99639 * 0.02562 * 16 14 13 39 39 H 1.08998 * 109.47608 * 299.99572 * 17 16 14 40 40 H 1.08993 * 109.47680 * 60.00106 * 17 16 14 41 41 H 0.96999 * 119.99688 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.11600 * 180.23458 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2745 0.0006 5 6 1.5467 -2.4877 0.0017 6 6 2.2405 -3.6794 0.0027 7 6 3.6238 -3.6800 -0.0026 8 6 4.3248 -2.4815 0.0017 9 8 5.6839 -2.4898 0.0013 10 6 6.3249 -3.7669 0.0025 11 6 7.8201 -3.5786 0.0024 12 6 8.6211 -3.4713 1.0876 13 6 9.9236 -3.3135 0.5376 14 6 11.1939 -3.1526 1.2861 15 8 11.1873 -3.1525 2.5011 16 7 12.3557 -3.0066 0.6187 17 6 13.6104 -2.8484 1.3581 18 6 14.7522 -2.7044 0.3850 19 1 14.5621 -2.7280 -0.6778 20 6 16.0394 -2.5415 0.8518 21 7 16.2707 -2.5123 2.1461 22 14 17.4546 -2.3638 -0.3543 23 1 16.9328 -2.4302 -1.7431 24 1 18.1261 -1.0567 -0.1403 25 1 18.4299 -3.4626 -0.1385 26 7 9.7737 -3.3329 -0.7636 27 8 8.6140 -3.4791 -1.0727 28 6 3.6406 -1.2781 0.0006 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 0.4667 -2.4912 0.0017 33 1 1.7020 -4.6156 0.0031 34 1 4.1610 -4.6170 -0.0062 35 1 6.0288 -4.3212 0.8931 36 1 6.0283 -4.3231 -0.8868 37 1 8.3377 -3.5004 2.1294 38 1 12.3610 -3.0064 -0.3513 39 1 13.5532 -1.9583 1.9847 40 1 13.7755 -3.7242 1.9855 41 1 17.1763 -2.3980 2.4744 42 1 4.1849 -0.3453 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427612152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:13 Heat of formation + Delta-G solvation = -42.714671 kcal Electronic energy + Delta-G solvation = -27228.409546 eV Core-core repulsion = 22948.781719 eV Total energy + Delta-G solvation = -4279.627827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.37215 -41.42066 -40.64826 -40.28057 -38.21110 -36.38746 -35.30672 -34.57430 -33.95845 -32.68738 -31.74716 -29.82658 -29.67259 -28.30351 -26.33171 -24.78031 -24.38055 -23.57720 -23.41568 -21.43125 -20.98698 -19.42240 -19.23579 -18.77473 -18.57155 -17.70419 -17.30751 -17.15560 -16.97361 -16.86398 -16.49651 -16.30566 -16.25510 -16.00483 -15.83246 -15.15813 -14.81140 -14.67379 -14.48650 -14.14055 -14.13559 -13.91947 -13.55412 -13.28431 -13.08185 -13.01329 -12.84398 -12.79963 -12.58271 -12.30973 -12.03096 -12.00638 -11.68484 -11.57022 -11.42389 -10.94096 -10.89750 -10.78391 -10.08163 -10.05785 -9.30127 -8.35944 -6.53070 -0.39494 -0.14795 0.33574 0.41278 1.39832 1.40626 1.41072 1.54621 1.60544 1.92718 1.99091 2.33572 2.38098 2.78937 2.79844 2.99066 3.13007 3.34337 3.68681 3.75677 3.90291 3.97013 4.03201 4.06373 4.18567 4.27021 4.35032 4.38429 4.51384 4.67350 4.69946 4.80325 4.92285 4.95884 5.09876 5.11199 5.25615 5.26430 5.32480 5.43478 5.50154 5.68849 5.73177 6.29443 6.47269 6.51216 6.56581 6.85308 7.00457 7.21138 8.76371 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.001561 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.018389 B =17934.190400 C =18334.506139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.391 3.609 3 O -0.510 6.510 4 C -0.152 4.152 5 C -0.099 4.099 6 C -0.087 4.087 7 C -0.171 4.171 8 C 0.106 3.894 9 O -0.335 6.335 10 C 0.145 3.855 11 C -0.033 4.033 12 C -0.150 4.150 13 C -0.047 4.047 14 C 0.579 3.421 15 O -0.571 6.571 16 N -0.690 5.690 17 C 0.264 3.736 18 C -0.563 4.563 19 H 0.079 0.921 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.987 3.013 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.274 1.274 26 N -0.333 5.333 27 O 0.150 5.850 28 C -0.126 4.126 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.173 0.827 33 H 0.172 0.828 34 H 0.167 0.833 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.200 0.800 38 H 0.408 0.592 39 H -0.001 1.001 40 H 0.002 0.998 41 H 0.271 0.729 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.764 -6.539 -7.829 40.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.272 3.728 3 O -0.389 6.389 4 C -0.154 4.154 5 C -0.116 4.116 6 C -0.104 4.104 7 C -0.189 4.189 8 C 0.061 3.939 9 O -0.250 6.250 10 C 0.071 3.929 11 C -0.096 4.096 12 C -0.173 4.173 13 C -0.204 4.204 14 C 0.363 3.637 15 O -0.450 6.450 16 N -0.339 5.339 17 C 0.142 3.858 18 C -0.600 4.600 19 H 0.097 0.903 20 C -0.191 4.191 21 N -0.564 5.564 22 Si 0.809 3.191 23 H -0.182 1.182 24 H -0.202 1.202 25 H -0.200 1.200 26 N -0.028 5.028 27 O 0.066 5.934 28 C -0.145 4.145 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.190 0.810 33 H 0.190 0.810 34 H 0.185 0.815 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.217 0.783 38 H 0.243 0.757 39 H 0.017 0.983 40 H 0.020 0.980 41 H 0.080 0.920 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -37.185 -5.696 -7.801 38.419 hybrid contribution 1.262 0.410 0.311 1.363 sum -35.922 -5.286 -7.490 37.073 Atomic orbital electron populations 1.22291 0.89716 1.07258 1.05807 1.23300 0.93816 0.86760 0.68888 1.90560 1.73492 1.36083 1.38789 1.20489 0.92628 0.96456 1.05778 1.21864 1.02089 0.90100 0.97593 1.21462 0.93005 0.99717 0.96251 1.21953 0.96561 0.97018 1.03368 1.18888 0.81564 0.94654 0.98765 1.86114 1.17426 1.32120 1.89342 1.21275 0.79693 0.84241 1.07730 1.24196 0.95849 1.05046 0.84526 1.22759 0.88692 1.02851 1.02962 1.23432 0.96951 1.09551 0.90498 1.17388 0.82569 0.77334 0.86391 1.90733 1.86907 1.53267 1.14117 1.46196 1.06832 1.69726 1.11147 1.18767 0.79877 0.94924 0.92238 1.21580 0.92022 1.52760 0.93682 0.90331 1.26026 1.01996 0.93655 0.97457 1.70122 1.22550 1.48998 1.14720 0.85082 0.77456 0.77954 0.78563 1.18154 1.20170 1.19961 1.74215 0.98354 1.14784 1.15462 1.84769 1.11430 1.63501 1.33670 1.20683 0.94121 0.96777 1.02898 0.86487 0.87853 0.87803 0.80969 0.81040 0.81548 0.84527 0.85632 0.78325 0.75666 0.98348 0.98050 0.91974 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.89 10.19 71.24 0.73 -0.16 16 2 C 0.39 5.94 7.23 28.04 0.20 6.14 16 3 O -0.51 -12.99 17.09 -2.94 -0.05 -13.04 16 4 C -0.15 -2.11 5.87 -20.16 -0.12 -2.22 16 5 C -0.10 -0.54 9.45 22.59 0.21 -0.33 16 6 C -0.09 -0.32 10.02 22.21 0.22 -0.10 16 7 C -0.17 -1.19 9.03 22.44 0.20 -0.99 16 8 C 0.11 1.60 6.68 22.46 0.15 1.75 16 9 O -0.34 -5.94 10.12 -92.56 -0.94 -6.87 16 10 C 0.15 1.52 5.29 71.24 0.38 1.89 16 11 C -0.03 -0.65 7.10 25.01 0.18 -0.48 16 12 C -0.15 -3.89 10.92 22.60 0.25 -3.65 16 13 C -0.05 -1.65 7.19 42.96 0.31 -1.34 16 14 C 0.58 26.00 7.85 86.93 0.68 26.68 16 15 O -0.57 -29.24 16.95 -3.72 -0.06 -29.30 16 16 N -0.69 -32.64 5.55 -469.25 -2.60 -35.24 16 17 C 0.26 15.01 5.43 85.64 0.46 15.47 16 18 C -0.56 -31.83 9.28 25.60 0.24 -31.59 16 19 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 20 C 0.01 0.50 5.46 84.66 0.46 0.97 16 21 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 22 Si 0.99 43.34 29.54 68.60 2.03 45.36 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 N -0.33 -10.61 11.84 -49.51 -0.59 -11.19 16 27 O 0.15 3.73 11.18 71.86 0.80 4.53 16 28 C -0.13 -2.41 9.54 22.68 0.22 -2.19 16 29 H 0.12 -0.27 5.60 -2.38 -0.01 -0.28 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.17 -0.39 5.92 -2.91 -0.02 -0.41 16 33 H 0.17 -0.58 8.06 -2.91 -0.02 -0.60 16 34 H 0.17 0.06 6.28 -2.91 -0.02 0.04 16 35 H 0.14 0.53 7.67 -2.39 -0.02 0.51 16 36 H 0.13 0.50 7.64 -2.39 -0.02 0.49 16 37 H 0.20 4.39 8.06 -2.91 -0.02 4.37 16 38 H 0.41 17.42 8.08 -92.71 -0.75 16.67 16 39 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.11 2.69 7.65 -2.91 -0.02 2.67 16 Total: -1.00 -85.08 376.82 4.00 -81.09 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.35 Total: 10.58 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 4.77 Total: 9.86 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -2.90 Total: -102.21 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.25 Total: -44.68 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -85.08 4.00 -81.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427612152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.372 kcal (2) G-P(sol) polarization free energy of solvation -85.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds