Wall clock time and date at job start Wed Apr 1 2020 02:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00077 * 2 1 4 4 C 1.50701 * 109.47518 * 275.00158 * 3 2 1 5 5 H 1.08007 * 119.99717 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00194 * 180.02562 * 4 3 2 7 7 N 1.31508 * 119.99777 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99723 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47323 * 90.00405 * 8 6 4 10 10 H 1.48504 * 109.47106 * 210.00054 * 8 6 4 11 11 H 1.48504 * 109.47379 * 329.99803 * 8 6 4 12 12 S 1.65599 * 119.99981 * 180.02562 * 2 1 3 13 13 O 1.42102 * 106.40644 * 156.45807 * 12 2 1 14 14 O 1.42101 * 106.40311 * 23.54036 * 12 2 1 15 15 N 1.65597 * 107.22016 * 269.99915 * 12 2 1 16 16 C 1.46506 * 119.99791 * 64.99551 * 15 12 2 17 17 C 1.50701 * 109.46793 * 165.00139 * 16 15 12 18 18 C 1.38165 * 120.03120 * 260.00109 * 17 16 15 19 19 C 1.38240 * 120.05959 * 179.97438 * 18 17 16 20 20 C 1.38296 * 120.11004 * 0.02562 * 19 18 17 21 21 C 1.38123 * 120.05444 * 0.03117 * 20 19 18 22 22 C 1.38709 * 120.02637 * 79.72815 * 17 16 15 23 23 O 1.35904 * 120.05758 * 359.97438 * 22 17 16 24 24 C 1.42901 * 117.00126 * 180.02562 * 23 22 17 25 25 C 1.53000 * 109.46927 * 179.97438 * 24 23 22 26 26 O 1.42903 * 109.46884 * 65.00230 * 25 24 23 27 27 H 1.08995 * 109.47176 * 270.00238 * 1 2 3 28 28 H 1.09000 * 109.47196 * 29.99765 * 1 2 3 29 29 H 1.08999 * 109.47098 * 149.99652 * 1 2 3 30 30 H 1.09000 * 109.47345 * 35.00176 * 3 2 1 31 31 H 1.09002 * 109.46806 * 155.00266 * 3 2 1 32 32 H 0.97004 * 119.99760 * 180.02562 * 7 6 4 33 33 H 0.96995 * 120.00100 * 245.27467 * 15 12 2 34 34 H 1.08998 * 109.47105 * 285.00387 * 16 15 12 35 35 H 1.09002 * 109.47033 * 45.00797 * 16 15 12 36 36 H 1.07999 * 119.96883 * 359.97438 * 18 17 16 37 37 H 1.07995 * 119.95087 * 179.97438 * 19 18 17 38 38 H 1.07992 * 119.97050 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.03058 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.47143 * 299.99953 * 24 23 22 41 41 H 1.09003 * 109.47266 * 60.00257 * 24 23 22 42 42 H 1.09001 * 109.47015 * 184.99792 * 25 24 23 43 43 H 1.09000 * 109.47441 * 305.00502 * 25 24 23 44 44 H 0.96701 * 114.00136 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9289 1.1935 -2.2332 6 6 3.0007 2.9504 -1.6664 7 7 3.5043 3.6464 -0.6706 8 14 3.1784 3.5668 -3.4207 9 1 2.0182 4.4281 -3.7628 10 1 4.4321 4.3531 -3.5445 11 1 3.2265 2.4092 -4.3497 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4113 -2.4063 -0.5455 15 7 2.5381 -1.8594 1.5809 16 6 1.3946 -2.1789 2.4392 17 6 1.8801 -2.8759 3.6840 18 6 1.7938 -4.2512 3.7847 19 6 2.2395 -4.8912 4.9260 20 6 2.7723 -4.1571 5.9700 21 6 2.8597 -2.7819 5.8747 22 6 2.4193 -2.1378 4.7273 23 8 2.5109 -0.7855 4.6282 24 6 3.0773 -0.0904 5.7409 25 6 3.0978 1.4111 5.4474 26 8 1.7571 1.8943 5.3425 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6502 2.0043 0.5895 31 1 3.1858 1.1176 0.4343 32 1 3.9678 4.4800 -0.8472 33 1 3.4385 -1.8930 1.9401 34 1 0.8794 -1.2589 2.7154 35 1 0.7079 -2.8325 1.9012 36 1 1.3777 -4.8266 2.9710 37 1 2.1708 -5.9662 5.0030 38 1 3.1202 -4.6595 6.8604 39 1 3.2755 -2.2090 6.6903 40 1 2.4769 -0.2788 6.6309 41 1 4.0956 -0.4413 5.9085 42 1 3.6097 1.9325 6.2563 43 1 3.6232 1.5909 4.5094 44 1 1.6936 2.8412 5.1572 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443239523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:07 Heat of formation + Delta-G solvation = -163.869515 kcal Electronic energy + Delta-G solvation = -29018.970306 eV Core-core repulsion = 24869.532762 eV Total energy + Delta-G solvation = -4149.437544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.26230 -38.79047 -38.27694 -37.31760 -37.21280 -36.85393 -36.29785 -34.49803 -32.12192 -31.45453 -30.06341 -29.66434 -26.84579 -26.53250 -24.63648 -24.20465 -22.62064 -22.22374 -20.40583 -19.25730 -18.97740 -18.55743 -18.41189 -18.24373 -17.47253 -17.11510 -16.80030 -16.58604 -16.29446 -15.79451 -15.57788 -15.24135 -15.08287 -14.95716 -14.86281 -14.40867 -14.06842 -13.99251 -13.83066 -13.60979 -13.47815 -13.33096 -13.13819 -13.04523 -13.00100 -12.91611 -12.47532 -12.43083 -12.38068 -12.30296 -11.97361 -11.89523 -11.75967 -11.67588 -10.98699 -10.60443 -10.49105 -9.91125 -9.75880 -9.11590 -8.19984 -6.31848 -0.34797 0.35902 0.50658 1.38845 1.41140 1.51996 2.06706 2.25301 2.40806 2.62671 2.87085 3.10551 3.31508 3.44541 3.70459 3.84554 3.95075 4.09638 4.14280 4.19117 4.29024 4.36792 4.43369 4.44133 4.56144 4.63660 4.71673 4.75528 4.78335 4.85452 4.89827 5.05979 5.08497 5.20346 5.38238 5.47952 5.50503 5.59848 5.69879 5.85541 5.89097 6.07954 6.13595 6.48320 6.76004 6.83386 7.36648 8.87666 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.003806 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.354088 B = 7355.324066 C = 8940.560697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.002 6.002 3 C 0.278 3.722 4 C -0.552 4.552 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.957 3.043 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.275 1.275 12 S 2.799 3.201 13 O -1.011 7.011 14 O -1.007 7.007 15 N -1.112 6.112 16 C 0.171 3.829 17 C -0.150 4.150 18 C -0.072 4.072 19 C -0.162 4.162 20 C -0.072 4.072 21 C -0.218 4.218 22 C 0.128 3.872 23 O -0.323 6.323 24 C 0.053 3.947 25 C 0.072 3.928 26 O -0.591 6.591 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.012 0.988 32 H 0.267 0.733 33 H 0.416 0.584 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.042 0.958 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 -11.752 19.292 22.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.844 5.844 3 C 0.154 3.846 4 C -0.591 4.591 5 H 0.070 0.930 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.190 1.190 10 H -0.202 1.202 11 H -0.200 1.200 12 S 2.807 3.193 13 O -0.995 6.995 14 O -0.990 6.990 15 N -0.874 5.874 16 C 0.045 3.955 17 C -0.153 4.153 18 C -0.090 4.090 19 C -0.180 4.180 20 C -0.090 4.090 21 C -0.236 4.236 22 C 0.082 3.918 23 O -0.237 6.237 24 C -0.022 4.022 25 C -0.006 4.006 26 O -0.400 6.400 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.044 0.956 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.250 0.750 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.160 0.840 37 H 0.168 0.832 38 H 0.172 0.828 39 H 0.164 0.836 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.061 0.939 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.745 -12.534 18.439 22.464 hybrid contribution 0.804 1.528 -0.439 1.782 sum -1.940 -11.006 18.000 21.187 Atomic orbital electron populations 1.21583 0.78184 1.03708 1.02249 1.57457 1.15684 1.21992 1.89269 1.18531 0.90142 0.80148 0.95767 1.21854 1.36359 1.06755 0.94111 0.93040 1.25739 0.94691 0.96688 1.01531 1.70010 1.37775 1.15671 1.32749 0.85573 0.78185 0.78285 0.79770 1.18959 1.20230 1.20023 1.01161 0.72101 0.72538 0.73455 1.93566 1.42917 1.85467 1.77599 1.93491 1.67606 1.60104 1.77828 1.55844 1.15501 1.85497 1.30509 1.20005 0.87096 0.99461 0.88893 1.19236 1.06950 0.94127 0.94947 1.21222 0.97012 0.91962 0.98833 1.21384 1.01607 1.01432 0.93615 1.21366 0.95626 0.92763 0.99284 1.21510 1.07383 0.96767 0.97988 1.19149 0.95439 0.82715 0.94520 1.86216 1.78166 1.16365 1.42957 1.23148 0.99505 0.91014 0.88528 1.22357 0.84278 0.92335 1.01608 1.86455 1.27310 1.31072 1.95119 0.91413 0.90962 0.90443 0.95605 0.96962 0.92370 0.74982 0.91448 0.89174 0.84033 0.83233 0.82829 0.83557 0.90372 0.88495 0.88215 0.93927 0.75362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.14 10.68 127.77 1.36 4.50 16 2 N -1.00 -43.92 3.23 -543.23 -1.75 -45.67 16 3 C 0.28 14.71 5.08 85.63 0.43 15.14 16 4 C -0.55 -32.18 9.38 25.60 0.24 -31.94 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.75 5.46 84.66 0.46 1.22 16 7 N -0.92 -54.53 13.29 21.45 0.28 -54.24 16 8 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 9 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 S 2.80 117.93 6.10 -56.49 -0.34 117.59 16 13 O -1.01 -51.71 17.11 -128.00 -2.19 -53.90 16 14 O -1.01 -42.94 16.21 -128.00 -2.07 -45.02 16 15 N -1.11 -36.98 6.05 -190.78 -1.15 -38.13 16 16 C 0.17 4.86 6.03 85.63 0.52 5.37 16 17 C -0.15 -3.75 5.29 -19.77 -0.10 -3.85 16 18 C -0.07 -1.45 9.66 22.25 0.22 -1.23 16 19 C -0.16 -2.58 10.04 22.28 0.22 -2.35 16 20 C -0.07 -1.08 10.04 22.26 0.22 -0.85 16 21 C -0.22 -3.97 9.04 22.37 0.20 -3.76 16 22 C 0.13 3.12 6.66 22.51 0.15 3.27 16 23 O -0.32 -8.79 9.34 -87.83 -0.82 -9.61 16 24 C 0.05 1.03 5.12 71.98 0.37 1.40 16 25 C 0.07 1.45 7.43 71.98 0.53 1.99 16 26 O -0.59 -14.41 13.62 -144.34 -1.97 -16.38 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 2.62 8.07 -2.39 -0.02 2.60 16 29 H 0.08 2.56 7.02 -2.39 -0.02 2.54 16 30 H 0.03 1.39 8.11 -2.39 -0.02 1.37 16 31 H 0.01 0.71 7.61 -2.39 -0.02 0.69 16 32 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.42 13.17 8.65 -96.75 -0.84 12.33 16 34 H 0.07 2.01 7.86 -2.39 -0.02 1.99 16 35 H 0.09 2.35 7.61 -2.39 -0.02 2.34 16 36 H 0.14 2.47 8.04 -2.91 -0.02 2.44 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 38 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.15 1.96 6.30 -2.91 -0.02 1.95 16 40 H 0.08 1.32 7.65 -2.39 -0.02 1.30 16 41 H 0.10 1.39 7.68 -2.39 -0.02 1.37 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.40 6.78 9.12 -74.06 -0.68 6.11 16 Total: -1.00 -79.79 386.10 -3.64 -83.43 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.48 Total: 25.73 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 4.83 Total: -11.11 kcal Atomic # 7 Polarization: -135.42 SS G_CDS: -2.62 Total: -138.04 kcal Atomic # 8 Polarization: -117.87 SS G_CDS: -7.05 Total: -124.92 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 117.93 SS G_CDS: -0.34 Total: 117.59 kcal Total: -79.79 -3.64 -83.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443239523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.444 kcal (2) G-P(sol) polarization free energy of solvation -79.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds