Wall clock time and date at job start Wed Apr 1 2020 02:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46893 * 2 1 4 4 C 1.46499 * 120.00087 * 274.99838 * 3 2 1 5 5 C 1.50698 * 109.47269 * 274.99942 * 4 3 2 6 6 H 1.08006 * 119.99963 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00451 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99757 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00260 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47166 * 60.00406 * 9 7 5 11 11 H 1.48500 * 109.47036 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47292 * 300.00470 * 9 7 5 13 13 S 1.65606 * 120.00233 * 94.99975 * 3 2 1 14 14 O 1.42095 * 106.40299 * 203.54105 * 13 3 2 15 15 O 1.42100 * 106.39714 * 336.45822 * 13 3 2 16 16 N 1.65595 * 107.21736 * 89.99518 * 13 3 2 17 17 C 1.47066 * 136.06083 * 269.63259 * 16 13 3 18 18 C 1.53754 * 87.89195 * 152.96630 * 17 16 13 19 19 C 1.52998 * 114.09165 * 139.78134 * 18 17 16 20 20 C 1.53007 * 114.57289 * 272.66500 * 18 17 16 21 21 C 1.52997 * 109.47063 * 278.62553 * 20 18 17 22 22 F 1.39905 * 109.46868 * 53.70001 * 21 20 18 23 23 F 1.39908 * 109.46861 * 173.69619 * 21 20 18 24 24 F 1.39892 * 109.47275 * 293.69844 * 21 20 18 25 25 C 1.47065 * 136.05565 * 90.00476 * 16 13 3 26 26 H 1.09006 * 109.47022 * 60.00110 * 1 2 3 27 27 H 1.08995 * 109.46797 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47571 * 299.99944 * 1 2 3 29 29 H 1.09001 * 109.47061 * 240.00091 * 2 1 3 30 30 H 1.08998 * 109.47144 * 119.99539 * 2 1 3 31 31 H 1.09001 * 109.47182 * 34.99965 * 4 3 2 32 32 H 1.09003 * 109.47330 * 155.00449 * 4 3 2 33 33 H 0.97000 * 119.99618 * 179.97438 * 8 7 5 34 34 H 1.09004 * 113.46872 * 267.69541 * 17 16 13 35 35 H 1.09001 * 113.46533 * 38.13640 * 17 16 13 36 36 H 1.09000 * 109.46999 * 314.34271 * 19 18 17 37 37 H 1.08994 * 109.47346 * 74.34699 * 19 18 17 38 38 H 1.08998 * 109.46842 * 194.34839 * 19 18 17 39 39 H 1.09000 * 109.46757 * 38.63002 * 20 18 17 40 40 H 1.09000 * 109.47191 * 158.62417 * 20 18 17 41 41 H 1.09001 * 113.46947 * 321.86055 * 25 16 13 42 42 H 1.09003 * 113.47314 * 92.30406 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1721 1.1112 -1.3839 7 6 3.8526 2.3607 -3.0848 8 7 3.0276 3.1855 -3.6920 9 14 5.5090 1.9637 -3.8517 10 1 5.5987 0.5037 -4.1079 11 1 5.6509 2.7012 -5.1327 12 1 6.5945 2.3709 -2.9237 13 16 2.4121 2.1203 1.4287 14 8 2.3056 3.5186 1.1998 15 8 1.6868 1.4416 2.4448 16 7 4.0143 1.8138 1.7138 17 6 4.7859 0.7732 2.4100 18 6 5.9538 1.0829 1.4592 19 6 7.3267 1.0788 2.1343 20 6 5.9254 0.3050 0.1419 21 6 6.4984 -1.0960 0.3646 22 9 5.8195 -1.7152 1.4196 23 9 6.3411 -1.8547 -0.8004 24 9 7.8583 -0.9992 0.6781 25 6 5.2915 2.4659 1.3878 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.3617 1.8097 -1.9453 32 1 2.0922 3.1803 -1.0756 33 1 3.2795 3.5881 -4.5378 34 1 4.9986 1.0142 3.4515 35 1 4.3756 -0.2288 2.2839 36 1 7.2730 1.6351 3.0702 37 1 7.6279 0.0515 2.3391 38 1 8.0573 1.5471 1.4748 39 1 4.8971 0.2253 -0.2108 40 1 6.5251 0.8288 -0.6024 41 1 5.3121 2.9060 0.3908 42 1 5.6376 3.1532 2.1598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452099426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:31 Heat of formation + Delta-G solvation = -195.979017 kcal Electronic energy + Delta-G solvation = -31629.957639 eV Core-core repulsion = 26937.270983 eV Total energy + Delta-G solvation = -4692.686656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.117 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.04546 -47.52897 -47.47934 -39.90309 -36.67042 -36.07505 -35.24430 -32.80248 -32.62960 -29.99093 -29.22236 -26.70169 -25.93088 -25.56705 -23.61238 -23.09086 -21.70202 -19.36974 -18.49497 -18.36778 -18.20357 -17.15620 -17.10365 -16.75237 -16.29856 -15.81422 -15.19120 -14.81136 -14.65492 -14.42505 -14.26454 -13.98482 -13.93770 -13.78986 -13.63831 -13.42965 -13.35516 -13.05220 -12.87935 -12.42921 -12.23357 -12.11667 -11.99729 -11.92128 -11.74256 -11.71143 -11.52400 -11.39816 -11.35102 -11.10489 -11.03476 -10.69008 -10.53291 -10.39170 -10.16436 -10.08856 -9.69248 -8.86410 -8.55873 -8.11844 -6.18226 -4.25597 1.13947 2.87861 3.16365 3.23487 3.25896 3.41250 3.83072 4.03176 4.09316 4.15493 4.27658 4.34740 4.69817 4.80531 4.87076 5.05074 5.16010 5.37621 5.49967 5.57151 5.59394 5.66077 5.72564 5.77570 5.79791 5.82552 5.93363 6.01120 6.06510 6.16633 6.24348 6.29271 6.61374 6.65157 6.75212 7.31288 7.39126 7.60466 7.79238 8.08323 8.77921 9.40199 10.89789 Molecular weight = 344.12amu Principal moments of inertia in cm(-1) A = 0.008861 B = 0.007210 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.025639 B = 3882.300169 C = 5347.643380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.989 5.989 4 C 0.245 3.755 5 C -0.546 4.546 6 H 0.067 0.933 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.882 3.118 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 S 2.805 3.195 14 O -0.973 6.973 15 O -0.994 6.994 16 N -1.047 6.047 17 C 0.136 3.864 18 C -0.106 4.106 19 C -0.147 4.147 20 C -0.151 4.151 21 C 0.453 3.547 22 F -0.184 7.184 23 F -0.184 7.184 24 F -0.185 7.185 25 C 0.147 3.853 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.265 0.735 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.134 0.866 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -6.991 9.466 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.003 3.997 3 N -0.831 5.831 4 C 0.123 3.877 5 C -0.585 4.585 6 H 0.085 0.915 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.709 3.291 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.199 1.199 13 S 2.816 3.184 14 O -0.958 6.958 15 O -0.978 6.978 16 N -0.885 5.885 17 C 0.010 3.990 18 C -0.108 4.108 19 C -0.205 4.205 20 C -0.188 4.188 21 C 0.399 3.601 22 F -0.165 7.165 23 F -0.165 7.165 24 F -0.166 7.166 25 C 0.021 3.979 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.152 0.848 40 H 0.134 0.866 41 H 0.112 0.888 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.112 -6.325 9.798 13.167 hybrid contribution 1.180 -0.612 -0.925 1.619 sum 7.293 -6.937 8.873 13.418 Atomic orbital electron populations 1.22193 0.96795 1.01443 1.02400 1.20996 0.93845 0.82859 1.02051 1.57814 1.77915 1.23027 1.24313 1.19198 0.97360 0.92223 0.78915 1.21628 1.02377 1.28275 1.06185 0.91527 1.24916 0.96990 0.94802 0.96825 1.69915 1.35899 1.29520 1.17044 0.86825 0.84291 0.78862 0.79142 1.19830 1.21072 1.19867 1.01157 0.71291 0.73215 0.72764 1.93573 1.85299 1.30836 1.86065 1.93538 1.69779 1.76636 1.57843 1.60588 1.21555 1.37843 1.68541 1.22638 0.88257 0.92288 0.95830 1.22245 0.95871 0.98261 0.94453 1.21966 0.94669 1.03267 1.00595 1.22920 1.07087 0.89133 0.99692 1.20702 0.75882 0.89835 0.73664 1.93146 1.79829 1.85233 1.58317 1.93204 1.95342 1.78802 1.49160 1.93127 1.34373 1.96444 1.92668 1.22423 0.79630 0.93252 1.02614 0.92023 0.92305 0.92668 0.90184 0.92018 0.94300 0.93216 0.92472 0.89681 0.90273 0.91684 0.91235 0.91494 0.84802 0.86584 0.88847 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.18 6.06 -4.04 -0.02 2.16 16 3 N -0.99 -19.60 2.82 -115.66 -0.33 -19.93 16 4 C 0.25 5.77 5.43 -5.20 -0.03 5.74 16 5 C -0.55 -13.08 9.38 -34.44 -0.32 -13.40 16 6 H 0.07 1.45 4.63 -52.48 -0.24 1.21 16 7 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -24.27 13.29 55.43 0.74 -23.54 16 9 Si 0.88 19.30 29.54 -169.99 -5.02 14.28 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 13 S 2.81 55.27 6.64 -107.50 -0.71 54.55 16 14 O -0.97 -22.52 16.69 -57.17 -0.95 -23.48 16 15 O -0.99 -20.32 17.11 -57.17 -0.98 -21.30 16 16 N -1.05 -16.81 4.07 -124.98 -0.51 -17.32 16 17 C 0.14 1.73 7.48 -8.38 -0.06 1.67 16 18 C -0.11 -1.28 0.99 -153.86 -0.15 -1.44 16 19 C -0.15 -1.41 8.12 37.16 0.30 -1.11 16 20 C -0.15 -2.06 4.46 -26.73 -0.12 -2.18 16 21 C 0.45 5.95 2.90 37.16 0.11 6.05 16 22 F -0.18 -2.35 15.15 2.25 0.03 -2.31 16 23 F -0.18 -2.71 17.32 2.25 0.04 -2.67 16 24 F -0.18 -2.27 14.31 2.25 0.03 -2.24 16 25 C 0.15 2.04 7.89 -8.51 -0.07 1.98 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 30 H 0.06 0.95 7.61 -51.93 -0.40 0.55 16 31 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 32 H 0.05 1.31 6.91 -51.93 -0.36 0.95 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.08 1.00 6.70 -51.93 -0.35 0.65 16 36 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 37 H 0.07 0.67 5.92 -51.93 -0.31 0.36 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.13 2.10 5.42 -51.93 -0.28 1.82 16 40 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.09 1.47 8.12 -51.93 -0.42 1.05 16 42 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -29.86 361.57 -8.01 -37.87 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.71 Total: 1.79 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.15 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.10 Total: -60.79 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -1.93 Total: -44.78 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.11 Total: -7.22 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -0.71 Total: 54.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.86 -8.01 -37.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452099426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.113 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds