Wall clock time and date at job start Wed Apr 1 2020 02:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46893 * 2 1 4 4 C 1.46499 * 120.00087 * 274.99838 * 3 2 1 5 5 C 1.50698 * 109.47269 * 274.99942 * 4 3 2 6 6 H 1.08006 * 119.99963 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00451 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99757 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00260 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47166 * 60.00406 * 9 7 5 11 11 H 1.48500 * 109.47036 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47292 * 300.00470 * 9 7 5 13 13 S 1.65606 * 120.00233 * 94.99975 * 3 2 1 14 14 O 1.42095 * 106.40299 * 203.54105 * 13 3 2 15 15 O 1.42100 * 106.39714 * 336.45822 * 13 3 2 16 16 N 1.65595 * 107.21736 * 89.99518 * 13 3 2 17 17 C 1.47066 * 136.06083 * 269.63259 * 16 13 3 18 18 C 1.53754 * 87.89195 * 152.96630 * 17 16 13 19 19 C 1.52998 * 114.09165 * 139.78134 * 18 17 16 20 20 C 1.53007 * 114.57289 * 272.66500 * 18 17 16 21 21 C 1.52997 * 109.47063 * 278.62553 * 20 18 17 22 22 F 1.39905 * 109.46868 * 53.70001 * 21 20 18 23 23 F 1.39908 * 109.46861 * 173.69619 * 21 20 18 24 24 F 1.39892 * 109.47275 * 293.69844 * 21 20 18 25 25 C 1.47065 * 136.05565 * 90.00476 * 16 13 3 26 26 H 1.09006 * 109.47022 * 60.00110 * 1 2 3 27 27 H 1.08995 * 109.46797 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47571 * 299.99944 * 1 2 3 29 29 H 1.09001 * 109.47061 * 240.00091 * 2 1 3 30 30 H 1.08998 * 109.47144 * 119.99539 * 2 1 3 31 31 H 1.09001 * 109.47182 * 34.99965 * 4 3 2 32 32 H 1.09003 * 109.47330 * 155.00449 * 4 3 2 33 33 H 0.97000 * 119.99618 * 179.97438 * 8 7 5 34 34 H 1.09004 * 113.46872 * 267.69541 * 17 16 13 35 35 H 1.09001 * 113.46533 * 38.13640 * 17 16 13 36 36 H 1.09000 * 109.46999 * 314.34271 * 19 18 17 37 37 H 1.08994 * 109.47346 * 74.34699 * 19 18 17 38 38 H 1.08998 * 109.46842 * 194.34839 * 19 18 17 39 39 H 1.09000 * 109.46757 * 38.63002 * 20 18 17 40 40 H 1.09000 * 109.47191 * 158.62417 * 20 18 17 41 41 H 1.09001 * 113.46947 * 321.86055 * 25 16 13 42 42 H 1.09003 * 113.47314 * 92.30406 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1721 1.1112 -1.3839 7 6 3.8526 2.3607 -3.0848 8 7 3.0276 3.1855 -3.6920 9 14 5.5090 1.9637 -3.8517 10 1 5.5987 0.5037 -4.1079 11 1 5.6509 2.7012 -5.1327 12 1 6.5945 2.3709 -2.9237 13 16 2.4121 2.1203 1.4287 14 8 2.3056 3.5186 1.1998 15 8 1.6868 1.4416 2.4448 16 7 4.0143 1.8138 1.7138 17 6 4.7859 0.7732 2.4100 18 6 5.9538 1.0829 1.4592 19 6 7.3267 1.0788 2.1343 20 6 5.9254 0.3050 0.1419 21 6 6.4984 -1.0960 0.3646 22 9 5.8195 -1.7152 1.4196 23 9 6.3411 -1.8547 -0.8004 24 9 7.8583 -0.9992 0.6781 25 6 5.2915 2.4659 1.3878 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.3617 1.8097 -1.9453 32 1 2.0922 3.1803 -1.0756 33 1 3.2795 3.5881 -4.5378 34 1 4.9986 1.0142 3.4515 35 1 4.3756 -0.2288 2.2839 36 1 7.2730 1.6351 3.0702 37 1 7.6279 0.0515 2.3391 38 1 8.0573 1.5471 1.4748 39 1 4.8971 0.2253 -0.2108 40 1 6.5251 0.8288 -0.6024 41 1 5.3121 2.9060 0.3908 42 1 5.6376 3.1532 2.1598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452099426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:30 Heat of formation + Delta-G solvation = -215.530932 kcal Electronic energy + Delta-G solvation = -31630.805474 eV Core-core repulsion = 26937.270983 eV Total energy + Delta-G solvation = -4693.534491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.117 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.07777 -48.57040 -48.50660 -40.98497 -38.31475 -37.68593 -36.90761 -34.66840 -33.72803 -31.54727 -30.19319 -28.48676 -27.00659 -26.63491 -25.02947 -24.46654 -23.25435 -20.43909 -19.78367 -19.49071 -19.26866 -18.72146 -18.61721 -18.17597 -17.73399 -17.37396 -16.46499 -16.26674 -15.75712 -15.67791 -15.45135 -15.21045 -15.02946 -14.89351 -14.82411 -14.69214 -14.61665 -14.57722 -14.01846 -13.81227 -13.73733 -13.51550 -13.37238 -13.22183 -13.18937 -13.05591 -12.91993 -12.82781 -12.70133 -12.67586 -12.34196 -12.23423 -12.02496 -11.91302 -11.58099 -11.37068 -11.15500 -10.54007 -10.06727 -9.77817 -8.13406 -6.26558 -0.38811 1.43521 1.47008 1.51902 1.83057 1.97185 2.43435 2.54359 2.78832 3.04235 3.10193 3.18665 3.21607 3.41041 3.76430 3.81004 3.96939 4.11592 4.39469 4.42209 4.48088 4.59214 4.63722 4.67848 4.69688 4.75845 4.87849 4.92346 4.99388 5.05918 5.13088 5.17935 5.28291 5.38964 5.40933 5.53248 5.65437 5.81265 5.96908 6.14967 6.86183 7.43568 8.95074 Molecular weight = 344.12amu Principal moments of inertia in cm(-1) A = 0.008861 B = 0.007210 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.025639 B = 3882.300169 C = 5347.643380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.994 5.994 4 C 0.261 3.739 5 C -0.541 4.541 6 H 0.089 0.911 7 C 0.016 3.984 8 N -0.930 5.930 9 Si 0.938 3.062 10 H -0.265 1.265 11 H -0.295 1.295 12 H -0.250 1.250 13 S 2.817 3.183 14 O -1.016 7.016 15 O -1.003 7.003 16 N -1.055 6.055 17 C 0.133 3.867 18 C -0.092 4.092 19 C -0.141 4.141 20 C -0.156 4.156 21 C 0.460 3.540 22 F -0.180 7.180 23 F -0.194 7.194 24 F -0.176 7.176 25 C 0.139 3.861 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.018 0.982 32 H 0.013 0.987 33 H 0.263 0.737 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.324 -8.616 11.014 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.834 5.834 4 C 0.138 3.862 5 C -0.580 4.580 6 H 0.107 0.893 7 C -0.184 4.184 8 N -0.570 5.570 9 Si 0.763 3.237 10 H -0.190 1.190 11 H -0.221 1.221 12 H -0.174 1.174 13 S 2.829 3.171 14 O -1.000 7.000 15 O -0.987 6.987 16 N -0.897 5.897 17 C 0.008 3.992 18 C -0.094 4.094 19 C -0.199 4.199 20 C -0.193 4.193 21 C 0.406 3.594 22 F -0.162 7.162 23 F -0.176 7.176 24 F -0.158 7.158 25 C 0.014 3.986 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.037 0.963 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.441 -7.980 11.377 16.259 hybrid contribution 0.448 -0.144 -1.332 1.413 sum 8.889 -8.124 10.045 15.681 Atomic orbital electron populations 1.22185 0.95912 1.03232 1.01302 1.21238 0.94710 0.81358 1.03077 1.57709 1.78818 1.24008 1.22892 1.18729 0.96919 0.90561 0.80036 1.22030 1.02545 1.27604 1.05812 0.89280 1.25735 1.00327 0.94724 0.97575 1.70073 1.38071 1.31327 1.17542 0.85903 0.80871 0.78779 0.78179 1.19015 1.22064 1.17433 1.00475 0.72074 0.72139 0.72423 1.93515 1.86407 1.33568 1.86541 1.93513 1.70891 1.76502 1.57822 1.60300 1.20872 1.39473 1.69006 1.22997 0.87385 0.91524 0.97273 1.22155 0.97264 0.96311 0.93702 1.21963 0.92605 1.03963 1.01403 1.22890 1.05779 0.89923 1.00755 1.20512 0.76176 0.89255 0.73425 1.93154 1.79831 1.85149 1.58049 1.93187 1.95440 1.79039 1.49891 1.93146 1.33705 1.96380 1.92561 1.22715 0.78656 0.94779 1.02431 0.93300 0.89083 0.93558 0.89999 0.90004 0.96347 0.96851 0.92834 0.86713 0.90079 0.89518 0.90910 0.90875 0.86979 0.86472 0.91185 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 10.24 71.98 0.74 -4.40 16 2 C 0.12 4.04 6.06 86.38 0.52 4.56 16 3 N -0.99 -39.93 2.82 -519.85 -1.47 -41.40 16 4 C 0.26 12.77 5.43 85.63 0.47 13.24 16 5 C -0.54 -26.23 9.38 25.60 0.24 -25.99 16 6 H 0.09 3.83 4.63 -2.91 -0.01 3.82 16 7 C 0.02 0.81 5.46 84.65 0.46 1.28 16 8 N -0.93 -52.62 13.29 21.45 0.28 -52.33 16 9 Si 0.94 39.23 29.54 68.60 2.03 41.26 16 10 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 13 S 2.82 111.25 6.64 -56.49 -0.38 110.88 16 14 O -1.02 -48.43 16.69 -128.00 -2.14 -50.57 16 15 O -1.00 -40.33 17.11 -128.00 -2.19 -42.52 16 16 N -1.05 -32.32 4.07 -549.32 -2.24 -34.55 16 17 C 0.13 2.97 7.48 83.26 0.62 3.60 16 18 C -0.09 -1.95 0.99 -51.76 -0.05 -2.00 16 19 C -0.14 -2.11 8.12 71.98 0.58 -1.53 16 20 C -0.16 -3.90 4.46 30.60 0.14 -3.76 16 21 C 0.46 10.83 2.90 71.98 0.21 11.04 16 22 F -0.18 -4.09 15.15 44.97 0.68 -3.40 16 23 F -0.19 -5.30 17.32 44.97 0.78 -4.52 16 24 F -0.18 -3.76 14.31 44.97 0.64 -3.12 16 25 C 0.14 3.60 7.89 83.18 0.66 4.26 16 26 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 2.68 8.11 -2.39 -0.02 2.66 16 30 H 0.08 2.38 7.61 -2.39 -0.02 2.36 16 31 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 32 H 0.01 0.75 6.91 -2.39 -0.02 0.74 16 33 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 34 H 0.11 1.94 8.10 -2.38 -0.02 1.92 16 35 H 0.08 1.80 6.70 -2.39 -0.02 1.78 16 36 H 0.09 0.96 8.13 -2.39 -0.02 0.94 16 37 H 0.07 1.09 5.92 -2.39 -0.01 1.07 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.11 3.33 5.42 -2.39 -0.01 3.32 16 40 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.07 2.15 8.12 -2.39 -0.02 2.13 16 42 H 0.11 2.27 8.10 -2.39 -0.02 2.25 16 Total: -1.00 -65.87 361.57 1.64 -64.23 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.05 Total: 15.77 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 4.59 Total: 0.30 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -3.42 Total: -128.28 kcal Atomic # 8 Polarization: -88.77 SS G_CDS: -4.33 Total: -93.09 kcal Atomic # 9 Polarization: -13.15 SS G_CDS: 2.10 Total: -11.05 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 16 Polarization: 111.25 SS G_CDS: -0.38 Total: 110.88 kcal Total: -65.87 1.64 -64.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452099426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.302 kcal (2) G-P(sol) polarization free energy of solvation -65.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds