Wall clock time and date at job start Wed Apr 1 2020 02:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.33876 * 122.76392 * 2 1 4 4 O 1.21218 * 125.39927 * 0.02562 * 3 2 1 5 5 C 1.51318 * 109.20547 * 179.97438 * 3 2 1 6 6 C 1.54228 * 103.55612 * 0.02562 * 5 3 2 7 7 H 1.09001 * 110.60347 * 118.67246 * 6 5 3 8 8 N 1.46503 * 110.60663 * 241.48239 * 6 5 3 9 9 C 1.34779 * 120.00015 * 205.00197 * 8 6 5 10 10 O 1.21718 * 119.99886 * 359.97438 * 9 8 6 11 11 C 1.46247 * 120.00078 * 179.97438 * 9 8 6 12 12 C 1.35019 * 120.00244 * 179.97438 * 11 9 8 13 13 C 1.46960 * 120.00391 * 179.97438 * 12 11 9 14 14 C 1.40026 * 120.10276 * 179.97438 * 13 12 11 15 15 C 1.37594 * 119.89669 * 180.02562 * 14 13 12 16 16 C 1.39186 * 120.10270 * 0.25827 * 15 14 13 17 17 O 1.35570 * 119.89533 * 179.72239 * 16 15 14 18 18 C 1.34778 * 117.00452 * 354.44371 * 17 16 15 19 19 H 1.08005 * 119.99749 * 5.06251 * 18 17 16 20 20 C 1.38712 * 120.00163 * 185.05579 * 18 17 16 21 21 N 1.31511 * 120.00210 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00313 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46972 * 89.99793 * 22 20 18 24 24 H 1.48501 * 109.47530 * 210.00204 * 22 20 18 25 25 H 1.48497 * 109.47022 * 330.00388 * 22 20 18 26 26 C 1.39173 * 120.19870 * 359.49053 * 16 15 14 27 27 C 1.37597 * 120.10372 * 0.50460 * 26 16 15 28 28 C 1.33885 * 122.75821 * 179.97438 * 2 1 3 29 29 O 1.21220 * 125.40106 * 0.03884 * 28 2 1 30 30 H 1.09007 * 109.46869 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47255 * 119.97096 * 1 2 3 32 32 H 1.08995 * 109.47729 * 239.97407 * 1 2 3 33 33 H 1.09004 * 110.60583 * 241.48457 * 5 3 2 34 34 H 1.09002 * 110.60377 * 118.51958 * 5 3 2 35 35 H 0.96995 * 120.00073 * 24.99895 * 8 6 5 36 36 H 1.08003 * 119.99859 * 359.97438 * 11 9 8 37 37 H 1.08003 * 119.99897 * 359.97438 * 12 11 9 38 38 H 1.07997 * 120.04773 * 0.05064 * 14 13 12 39 39 H 1.08001 * 119.95149 * 179.97438 * 15 14 13 40 40 H 0.96998 * 120.00620 * 179.97438 * 21 20 18 41 41 H 1.08004 * 119.94780 * 180.26075 * 26 16 15 42 42 H 1.08000 * 120.05101 * 179.72245 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1895 1.1258 0.0000 4 8 1.7386 2.2510 0.0004 5 6 3.6605 0.7710 0.0006 6 6 3.6604 -0.7712 0.0003 7 1 4.1504 -1.1547 -0.8947 8 7 4.3145 -1.2871 1.2055 9 6 4.8713 -2.5145 1.1971 10 8 4.8303 -3.1945 0.1884 11 6 5.5248 -3.0292 2.3999 12 6 6.0822 -4.2590 2.3917 13 6 6.7393 -4.7761 3.6003 14 6 7.3175 -6.0513 3.5942 15 6 7.9312 -6.5315 4.7283 16 6 7.9731 -5.7538 5.8818 17 8 8.5739 -6.2333 6.9985 18 6 9.0072 -7.5090 6.9606 19 1 8.9431 -8.0740 6.0424 20 6 9.5355 -8.0962 8.1009 21 7 9.6132 -7.4084 9.2191 22 14 10.1354 -9.8646 8.0485 23 1 11.5716 -9.8891 7.6715 24 1 9.9642 -10.4852 9.3867 25 1 9.3473 -10.6251 7.0457 26 6 7.4043 -4.4837 5.8909 27 6 6.7885 -3.9952 4.7615 28 6 2.1894 -1.1259 0.0005 29 8 1.7384 -2.2511 0.0003 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5134 -0.8903 32 1 -0.3634 -0.5142 0.8897 33 1 4.1473 1.1548 0.8973 34 1 4.1479 1.1545 -0.8958 35 1 4.3469 -0.7454 2.0094 36 1 5.5615 -2.4257 3.2948 37 1 6.0451 -4.8627 1.4970 38 1 7.2822 -6.6569 2.7007 39 1 8.3772 -7.5151 4.7247 40 1 9.9823 -7.8191 10.0165 41 1 7.4428 -3.8820 6.7870 42 1 6.3435 -3.0112 4.7708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492820443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:24 Heat of formation + Delta-G solvation = -74.763960 kcal Electronic energy + Delta-G solvation = -27604.728497 eV Core-core repulsion = 23323.710909 eV Total energy + Delta-G solvation = -4281.017588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.43972 -39.72376 -39.20118 -38.88636 -36.96609 -36.40841 -35.35471 -33.29245 -32.42359 -32.01739 -30.46883 -28.44341 -27.48114 -26.38686 -25.65240 -23.63375 -22.55225 -22.18610 -21.12292 -20.08858 -19.54881 -18.31472 -17.77577 -17.72564 -17.22444 -17.09075 -16.86917 -15.82247 -15.50704 -15.07176 -14.83486 -14.79694 -14.63352 -14.46871 -14.12562 -14.09371 -13.86106 -13.67104 -13.37745 -13.19139 -13.07358 -13.04934 -12.63681 -12.48267 -11.98447 -11.82317 -11.76514 -11.36152 -11.15417 -11.12835 -10.73091 -10.70699 -10.56727 -10.26316 -9.98125 -9.67091 -9.53513 -9.44431 -8.90084 -8.42138 -7.16519 -6.68641 -4.23285 0.95259 0.99809 1.96552 2.10203 2.10304 2.48560 2.92691 3.01564 3.02815 3.07769 3.36541 3.57637 3.69108 3.77366 3.79563 4.41024 4.47080 4.68596 4.78192 4.83948 4.88792 4.91655 4.98377 5.00197 5.09419 5.18031 5.21920 5.49033 5.55122 5.62304 5.91985 5.97797 6.06984 6.27443 6.36975 6.42416 6.55406 6.74801 6.78425 6.87493 7.08675 7.17416 7.21599 7.26648 7.28987 7.59956 7.76629 8.11968 8.76050 9.42469 10.47792 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.029989 B = 0.001591 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.447181 B =17592.163944 C =17874.837196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.577 5.577 3 C 0.530 3.470 4 O -0.481 6.481 5 C -0.164 4.164 6 C 0.119 3.881 7 H 0.142 0.858 8 N -0.720 5.720 9 C 0.561 3.439 10 O -0.540 6.540 11 C -0.288 4.288 12 C 0.047 3.953 13 C -0.202 4.202 14 C -0.033 4.033 15 C -0.243 4.243 16 C 0.168 3.832 17 O -0.161 6.161 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.042 3.958 21 N -0.851 5.851 22 Si 0.945 3.055 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.265 1.265 26 C -0.200 4.200 27 C -0.041 4.041 28 C 0.510 3.490 29 O -0.452 6.452 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.407 0.593 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.132 0.868 40 H 0.275 0.725 41 H 0.121 0.879 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.199 14.891 -15.705 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.322 5.322 3 C 0.319 3.681 4 O -0.353 6.353 5 C -0.204 4.204 6 C 0.010 3.990 7 H 0.159 0.841 8 N -0.375 5.375 9 C 0.354 3.646 10 O -0.418 6.418 11 C -0.309 4.309 12 C 0.028 3.972 13 C -0.203 4.203 14 C -0.051 4.051 15 C -0.262 4.262 16 C 0.111 3.889 17 O -0.062 6.062 18 C -0.468 4.468 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.483 5.483 22 Si 0.769 3.231 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.189 1.189 26 C -0.219 4.219 27 C -0.059 4.059 28 C 0.295 3.705 29 O -0.319 6.319 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.243 0.757 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.132 0.868 39 H 0.149 0.851 40 H 0.085 0.915 41 H 0.139 0.861 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.604 14.401 -15.909 24.396 hybrid contribution 0.117 -0.584 0.425 0.731 sum -11.488 13.817 -15.484 23.720 Atomic orbital electron populations 1.21964 0.76942 1.04767 1.03878 1.46736 1.09867 1.09355 1.66261 1.20701 0.89861 0.83778 0.73754 1.90795 1.77649 1.21157 1.45681 1.22846 0.94399 0.94648 1.08473 1.21498 0.90247 0.93404 0.93891 0.84068 1.45694 1.59006 1.19098 1.13685 1.18504 0.77085 0.79979 0.88985 1.90816 1.59319 1.57020 1.34672 1.22288 1.10955 0.99907 0.97729 1.22314 0.86185 0.92980 0.95763 1.18441 1.10676 0.96990 0.94236 1.20997 0.93493 0.93666 0.96953 1.21106 1.08923 1.02595 0.93575 1.19623 0.89535 0.92663 0.87094 1.83899 1.61623 1.29307 1.31328 1.21489 1.40956 0.85766 0.98635 0.88478 1.25405 0.96504 1.00498 0.94057 1.70009 1.40312 1.37247 1.00752 0.85640 0.79315 0.79686 0.78457 1.19601 1.20022 1.18918 1.20150 1.06462 0.95772 0.99559 1.20874 0.95721 0.97879 0.91462 1.21478 0.90337 0.83959 0.74743 1.90817 1.77354 1.21139 1.42567 0.88768 0.90381 0.90382 0.85240 0.84820 0.75691 0.85675 0.85816 0.86751 0.85088 0.91543 0.86108 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 10.65 59.84 0.64 1.04 16 2 N -0.58 -4.38 2.95 -122.73 -0.36 -4.74 16 3 C 0.53 3.66 8.08 -11.08 -0.09 3.57 16 4 O -0.48 -4.71 17.23 5.61 0.10 -4.62 16 5 C -0.16 -0.62 6.79 -26.94 -0.18 -0.80 16 6 C 0.12 0.85 3.45 -68.14 -0.23 0.61 16 7 H 0.14 1.05 7.55 -51.93 -0.39 0.66 16 8 N -0.72 -5.87 5.11 -55.45 -0.28 -6.16 16 9 C 0.56 7.00 7.74 -13.04 -0.10 6.90 16 10 O -0.54 -8.72 15.88 5.17 0.08 -8.64 16 11 C -0.29 -3.57 9.41 -37.51 -0.35 -3.92 16 12 C 0.05 0.68 9.45 -37.19 -0.35 0.33 16 13 C -0.20 -3.30 5.87 -105.03 -0.62 -3.92 16 14 C -0.03 -0.56 9.78 -39.15 -0.38 -0.95 16 15 C -0.24 -4.90 9.14 -39.46 -0.36 -5.27 16 16 C 0.17 3.77 6.66 -38.88 -0.26 3.51 16 17 O -0.16 -4.29 9.74 0.75 0.01 -4.29 16 18 C -0.39 -10.29 9.48 30.91 0.29 -9.99 16 19 H 0.10 2.33 5.18 -52.48 -0.27 2.06 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.85 -23.51 13.67 55.48 0.76 -22.75 16 22 Si 0.95 19.26 29.55 -169.99 -5.02 14.24 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 26 C -0.20 -3.88 9.97 -39.47 -0.39 -4.27 16 27 C -0.04 -0.67 9.40 -39.15 -0.37 -1.04 16 28 C 0.51 4.90 7.72 -11.08 -0.09 4.82 16 29 O -0.45 -6.32 17.68 5.61 0.10 -6.22 16 30 H 0.09 0.51 7.41 -51.93 -0.38 0.13 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.13 0.25 7.71 -51.93 -0.40 -0.15 16 34 H 0.13 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.41 2.10 8.37 -40.82 -0.34 1.76 16 36 H 0.13 1.28 6.07 -52.48 -0.32 0.96 16 37 H 0.12 1.77 7.52 -52.48 -0.39 1.38 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.13 2.63 5.62 -52.49 -0.29 2.33 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.12 2.23 8.06 -52.48 -0.42 1.80 16 42 H 0.12 1.52 6.16 -52.49 -0.32 1.20 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -34.70 372.65 -6.33 -41.03 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.37 Total: 4.92 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.95 Total: -8.40 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.11 Total: -33.65 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.29 Total: -23.76 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.70 -6.33 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492820443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.736 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds