Wall clock time and date at job start Wed Apr 1 2020 02:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.33876 * 122.76392 * 2 1 4 4 O 1.21218 * 125.39927 * 0.02562 * 3 2 1 5 5 C 1.51318 * 109.20547 * 179.97438 * 3 2 1 6 6 C 1.54228 * 103.55612 * 0.02562 * 5 3 2 7 7 H 1.09001 * 110.60347 * 118.67246 * 6 5 3 8 8 N 1.46503 * 110.60663 * 241.48239 * 6 5 3 9 9 C 1.34779 * 120.00015 * 205.00197 * 8 6 5 10 10 O 1.21718 * 119.99886 * 359.97438 * 9 8 6 11 11 C 1.46247 * 120.00078 * 179.97438 * 9 8 6 12 12 C 1.35019 * 120.00244 * 179.97438 * 11 9 8 13 13 C 1.46960 * 120.00391 * 179.97438 * 12 11 9 14 14 C 1.40026 * 120.10276 * 179.97438 * 13 12 11 15 15 C 1.37594 * 119.89669 * 180.02562 * 14 13 12 16 16 C 1.39186 * 120.10270 * 0.25827 * 15 14 13 17 17 O 1.35570 * 119.89533 * 179.72239 * 16 15 14 18 18 C 1.34778 * 117.00452 * 354.44371 * 17 16 15 19 19 H 1.08005 * 119.99749 * 5.06251 * 18 17 16 20 20 C 1.38712 * 120.00163 * 185.05579 * 18 17 16 21 21 N 1.31511 * 120.00210 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00313 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46972 * 89.99793 * 22 20 18 24 24 H 1.48501 * 109.47530 * 210.00204 * 22 20 18 25 25 H 1.48497 * 109.47022 * 330.00388 * 22 20 18 26 26 C 1.39173 * 120.19870 * 359.49053 * 16 15 14 27 27 C 1.37597 * 120.10372 * 0.50460 * 26 16 15 28 28 C 1.33885 * 122.75821 * 179.97438 * 2 1 3 29 29 O 1.21220 * 125.40106 * 0.03884 * 28 2 1 30 30 H 1.09007 * 109.46869 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47255 * 119.97096 * 1 2 3 32 32 H 1.08995 * 109.47729 * 239.97407 * 1 2 3 33 33 H 1.09004 * 110.60583 * 241.48457 * 5 3 2 34 34 H 1.09002 * 110.60377 * 118.51958 * 5 3 2 35 35 H 0.96995 * 120.00073 * 24.99895 * 8 6 5 36 36 H 1.08003 * 119.99859 * 359.97438 * 11 9 8 37 37 H 1.08003 * 119.99897 * 359.97438 * 12 11 9 38 38 H 1.07997 * 120.04773 * 0.05064 * 14 13 12 39 39 H 1.08001 * 119.95149 * 179.97438 * 15 14 13 40 40 H 0.96998 * 120.00620 * 179.97438 * 21 20 18 41 41 H 1.08004 * 119.94780 * 180.26075 * 26 16 15 42 42 H 1.08000 * 120.05101 * 179.72245 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1895 1.1258 0.0000 4 8 1.7386 2.2510 0.0004 5 6 3.6605 0.7710 0.0006 6 6 3.6604 -0.7712 0.0003 7 1 4.1504 -1.1547 -0.8947 8 7 4.3145 -1.2871 1.2055 9 6 4.8713 -2.5145 1.1971 10 8 4.8303 -3.1945 0.1884 11 6 5.5248 -3.0292 2.3999 12 6 6.0822 -4.2590 2.3917 13 6 6.7393 -4.7761 3.6003 14 6 7.3175 -6.0513 3.5942 15 6 7.9312 -6.5315 4.7283 16 6 7.9731 -5.7538 5.8818 17 8 8.5739 -6.2333 6.9985 18 6 9.0072 -7.5090 6.9606 19 1 8.9431 -8.0740 6.0424 20 6 9.5355 -8.0962 8.1009 21 7 9.6132 -7.4084 9.2191 22 14 10.1354 -9.8646 8.0485 23 1 11.5716 -9.8891 7.6715 24 1 9.9642 -10.4852 9.3867 25 1 9.3473 -10.6251 7.0457 26 6 7.4043 -4.4837 5.8909 27 6 6.7885 -3.9952 4.7615 28 6 2.1894 -1.1259 0.0005 29 8 1.7384 -2.2511 0.0003 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5134 -0.8903 32 1 -0.3634 -0.5142 0.8897 33 1 4.1473 1.1548 0.8973 34 1 4.1479 1.1545 -0.8958 35 1 4.3469 -0.7454 2.0094 36 1 5.5615 -2.4257 3.2948 37 1 6.0451 -4.8627 1.4970 38 1 7.2822 -6.6569 2.7007 39 1 8.3772 -7.5151 4.7247 40 1 9.9823 -7.8191 10.0165 41 1 7.4428 -3.8820 6.7870 42 1 6.3435 -3.0112 4.7708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492820443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:23 Heat of formation + Delta-G solvation = -99.990329 kcal Electronic energy + Delta-G solvation = -27605.822394 eV Core-core repulsion = 23323.710909 eV Total energy + Delta-G solvation = -4282.111486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.08875 -40.89490 -40.54694 -39.70773 -38.49077 -37.18199 -36.11226 -34.73398 -34.01265 -32.77357 -31.94712 -29.75991 -28.04429 -27.56318 -26.97421 -24.75549 -23.73290 -23.21712 -22.29541 -20.82734 -20.69883 -19.80990 -18.88590 -18.58482 -18.39869 -18.03526 -17.65553 -16.69664 -16.44568 -16.32256 -16.25442 -15.96926 -15.61165 -15.49725 -15.40766 -15.27291 -14.89866 -14.83952 -14.59007 -14.14804 -14.09096 -13.72072 -13.59642 -13.55029 -13.30921 -13.14465 -12.92414 -12.70406 -12.55808 -12.20032 -12.12830 -12.12419 -11.39712 -11.20310 -11.10314 -11.04405 -10.93027 -10.57486 -10.24189 -9.87420 -8.67133 -8.51760 -6.17764 -0.24593 0.30174 0.60447 1.10695 1.36207 1.39836 1.47030 1.49471 1.53161 2.15576 2.18483 2.33938 2.86708 3.02446 3.11368 3.19081 3.23040 3.44036 3.79722 3.96721 4.04803 4.10320 4.19466 4.30045 4.34462 4.35274 4.37101 4.49065 4.58759 4.67995 4.68413 4.73443 4.96382 5.03841 5.18872 5.22163 5.28460 5.36551 5.59458 5.65479 5.66899 5.82810 5.98138 6.12371 6.15659 6.45966 6.62382 6.92788 7.19307 7.70056 8.70218 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.029989 B = 0.001591 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.447181 B =17592.163944 C =17874.837196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.578 5.578 3 C 0.533 3.467 4 O -0.509 6.509 5 C -0.142 4.142 6 C 0.120 3.880 7 H 0.143 0.857 8 N -0.700 5.700 9 C 0.557 3.443 10 O -0.576 6.576 11 C -0.245 4.245 12 C 0.018 3.982 13 C -0.171 4.171 14 C -0.041 4.041 15 C -0.250 4.250 16 C 0.129 3.871 17 O -0.220 6.220 18 C -0.416 4.416 19 H 0.105 0.895 20 C -0.018 4.018 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.262 1.262 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.208 4.208 27 C -0.035 4.035 28 C 0.510 3.490 29 O -0.503 6.503 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.426 0.574 36 H 0.158 0.842 37 H 0.124 0.876 38 H 0.143 0.857 39 H 0.123 0.877 40 H 0.275 0.725 41 H 0.123 0.877 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.245 17.448 -18.426 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.321 5.321 3 C 0.324 3.676 4 O -0.382 6.382 5 C -0.181 4.181 6 C 0.011 3.989 7 H 0.160 0.840 8 N -0.355 5.355 9 C 0.349 3.651 10 O -0.457 6.457 11 C -0.266 4.266 12 C -0.002 4.002 13 C -0.172 4.172 14 C -0.059 4.059 15 C -0.270 4.270 16 C 0.077 3.923 17 O -0.125 6.125 18 C -0.492 4.492 19 H 0.122 0.878 20 C -0.217 4.217 21 N -0.550 5.550 22 Si 0.837 3.163 23 H -0.187 1.187 24 H -0.196 1.196 25 H -0.177 1.177 26 C -0.227 4.227 27 C -0.053 4.053 28 C 0.297 3.703 29 O -0.374 6.374 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.177 0.823 34 H 0.183 0.817 35 H 0.265 0.735 36 H 0.175 0.825 37 H 0.142 0.858 38 H 0.161 0.839 39 H 0.141 0.859 40 H 0.084 0.916 41 H 0.141 0.859 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.691 17.051 -18.681 28.298 hybrid contribution 0.031 -0.905 0.752 1.177 sum -12.659 16.146 -17.929 27.247 Atomic orbital electron populations 1.22074 0.76599 1.05324 1.04151 1.46835 1.10427 1.09309 1.65549 1.21189 0.91005 0.82916 0.72489 1.90800 1.78367 1.22090 1.46941 1.22924 0.92220 0.91508 1.11459 1.21633 0.88284 0.95706 0.93323 0.84000 1.45499 1.57222 1.17840 1.14949 1.18578 0.77261 0.80946 0.88346 1.90826 1.60591 1.58344 1.35952 1.22700 1.06552 0.98811 0.98495 1.22186 0.88573 0.94391 0.95030 1.18779 1.07575 0.96015 0.94813 1.21324 0.92952 0.94699 0.96912 1.21201 1.09368 1.02339 0.94052 1.20215 0.90724 0.94246 0.87098 1.83881 1.65297 1.29850 1.33461 1.21886 1.41621 0.86424 0.99282 0.87751 1.26591 0.96654 1.05008 0.93455 1.70143 1.43714 1.39465 1.01696 0.84596 0.78998 0.74049 0.78678 1.18721 1.19607 1.17692 1.20441 1.06393 0.94805 1.01040 1.21308 0.94476 0.99563 0.89959 1.21876 0.91531 0.83469 0.73421 1.90799 1.78389 1.23088 1.45130 0.87993 0.90082 0.90315 0.82259 0.81696 0.73469 0.82484 0.85806 0.83905 0.85907 0.91610 0.85880 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 10.65 127.77 1.36 2.01 16 2 N -0.58 -7.37 2.95 -780.03 -2.30 -9.68 16 3 C 0.53 5.49 8.08 87.99 0.71 6.20 16 4 O -0.51 -8.48 17.23 -2.84 -0.05 -8.52 16 5 C -0.14 -0.33 6.79 30.46 0.21 -0.13 16 6 C 0.12 1.22 3.45 44.86 0.15 1.37 16 7 H 0.14 1.59 7.55 -2.39 -0.02 1.57 16 8 N -0.70 -7.96 5.11 -447.56 -2.29 -10.25 16 9 C 0.56 11.46 7.74 86.32 0.67 12.12 16 10 O -0.58 -16.90 15.88 -4.41 -0.07 -16.97 16 11 C -0.25 -4.77 9.41 23.61 0.22 -4.55 16 12 C 0.02 0.44 9.45 23.82 0.23 0.67 16 13 C -0.17 -5.03 5.87 -20.13 -0.12 -5.15 16 14 C -0.04 -1.35 9.78 22.55 0.22 -1.13 16 15 C -0.25 -10.33 9.14 22.35 0.20 -10.12 16 16 C 0.13 6.05 6.66 22.72 0.15 6.20 16 17 O -0.22 -12.59 9.74 -20.23 -0.20 -12.79 16 18 C -0.42 -23.26 9.48 67.93 0.64 -22.61 16 19 H 0.11 5.33 5.18 -2.91 -0.02 5.32 16 20 C -0.02 -1.00 5.49 84.85 0.47 -0.54 16 21 N -0.91 -54.02 13.67 21.62 0.30 -53.72 16 22 Si 1.02 41.27 29.55 68.60 2.03 43.30 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 26 C -0.21 -7.99 9.97 22.34 0.22 -7.76 16 27 C -0.04 -1.04 9.40 22.55 0.21 -0.82 16 28 C 0.51 8.60 7.72 87.99 0.68 9.28 16 29 O -0.50 -13.51 17.68 -2.85 -0.05 -13.56 16 30 H 0.10 0.96 7.41 -2.38 -0.02 0.94 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.16 -0.45 7.71 -2.39 -0.02 -0.46 16 34 H 0.17 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.43 1.76 8.37 -92.71 -0.78 0.99 16 36 H 0.16 2.05 6.07 -2.91 -0.02 2.04 16 37 H 0.12 3.15 7.52 -2.91 -0.02 3.13 16 38 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.12 5.16 5.62 -2.91 -0.02 5.14 16 40 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 42 H 0.16 3.23 6.16 -2.91 -0.02 3.21 16 Total: -1.00 -83.75 372.65 3.92 -79.83 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.33 Total: 17.32 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 6.23 Total: -14.96 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -4.30 Total: -73.65 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -0.37 Total: -51.84 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -83.75 3.92 -79.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492820443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.164 kcal (2) G-P(sol) polarization free energy of solvation -83.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds