Wall clock time and date at job start Wed Apr 1 2020 03:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.35676 * 116.99635 * 179.97438 * 5 4 3 7 7 C 1.38922 * 119.68320 * 179.72662 * 6 5 4 8 8 C 1.38382 * 119.11201 * 179.75588 * 7 6 5 9 9 C 1.38834 * 118.48218 * 0.51010 * 8 7 6 10 10 C 1.50698 * 120.35286 * 179.75262 * 9 8 7 11 11 N 1.46502 * 109.46998 * 269.97897 * 10 9 8 12 12 S 1.65604 * 120.00031 * 165.00027 * 11 10 9 13 13 O 1.42092 * 104.27880 * 181.07022 * 12 11 10 14 14 O 1.42101 * 104.27739 * 308.92982 * 12 11 10 15 15 C 1.81401 * 104.44986 * 64.99958 * 12 11 10 16 16 C 1.52990 * 109.47333 * 180.02562 * 15 12 11 17 17 C 1.50706 * 109.47445 * 180.02562 * 16 15 12 18 18 H 1.07997 * 119.99476 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00191 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00111 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47093 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47031 * 120.00472 * 21 19 17 24 24 H 1.48504 * 109.47403 * 240.00075 * 21 19 17 25 25 C 1.38045 * 119.29294 * 359.73325 * 9 8 7 26 26 N 1.31970 * 120.82893 * 0.02562 * 25 9 8 27 27 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 29 29 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 30 30 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 31 31 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 32 32 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 33 33 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 34 34 H 1.07994 * 120.44273 * 0.02562 * 7 6 5 35 35 H 1.07999 * 120.76154 * 180.24344 * 8 7 6 36 36 H 1.09006 * 109.47419 * 29.98104 * 10 9 8 37 37 H 1.08999 * 109.46912 * 149.97986 * 10 9 8 38 38 H 0.96996 * 120.00125 * 345.00015 * 11 10 9 39 39 H 1.09010 * 109.47055 * 300.00374 * 15 12 11 40 40 H 1.08995 * 109.47098 * 59.99743 * 15 12 11 41 41 H 1.09002 * 109.47353 * 299.99772 * 16 15 12 42 42 H 1.08995 * 109.47483 * 60.00266 * 16 15 12 43 43 H 0.97005 * 120.00073 * 179.97438 * 20 19 17 44 44 H 1.07995 * 119.58588 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3008 0.3989 -1.3809 7 6 5.7802 -0.1900 -2.5443 8 6 7.1445 -0.3637 -2.6981 9 6 7.9843 0.0500 -1.6729 10 6 9.4763 -0.1242 -1.7936 11 7 9.8615 -1.4282 -1.2481 12 16 11.3601 -2.0525 -1.5749 13 8 11.3664 -3.3115 -0.9162 14 8 11.4758 -1.9646 -2.9884 15 6 12.5132 -0.9069 -0.7694 16 6 13.9491 -1.3808 -1.0024 17 6 14.9070 -0.4294 -0.3327 18 1 14.5293 0.4272 0.2056 19 6 16.2654 -0.6533 -0.4064 20 7 16.7253 -1.6968 -1.0615 21 14 17.4528 0.5263 0.4231 22 1 16.6883 1.6115 1.0887 23 1 18.2533 -0.2077 1.4358 24 1 18.3607 1.1126 -0.5954 25 6 7.4381 0.6230 -0.5420 26 7 6.1329 0.7799 -0.4263 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9783 2.1768 0.0902 33 1 3.8508 0.5687 0.8427 34 1 5.0977 -0.5039 -3.3201 35 1 7.5464 -0.8149 -3.5932 36 1 9.7648 -0.0699 -2.8435 37 1 9.9805 0.6658 -1.2371 38 1 9.2387 -1.9258 -0.6956 39 1 12.3874 0.0908 -1.1901 40 1 12.3087 -0.8784 0.3008 41 1 14.0752 -2.3786 -0.5820 42 1 14.1533 -1.4090 -2.0727 43 1 17.6811 -1.8541 -1.1137 44 1 8.0870 0.9462 0.2585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522024856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:42 Heat of formation + Delta-G solvation = -127.587874 kcal Electronic energy + Delta-G solvation = -26600.303376 eV Core-core repulsion = 22452.439123 eV Total energy + Delta-G solvation = -4147.864254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95991 -38.92000 -37.83131 -36.60894 -35.55835 -35.32801 -33.89864 -32.67345 -31.62228 -31.16788 -30.13598 -26.84929 -25.78951 -25.60711 -24.47125 -22.75095 -22.14729 -21.66628 -18.99091 -18.88088 -17.59036 -17.36441 -17.27062 -16.81319 -16.26049 -16.14177 -15.82428 -15.56786 -15.42528 -15.08753 -14.77794 -14.58357 -14.53908 -13.87856 -13.67383 -13.45042 -13.34017 -13.22160 -12.85739 -12.51605 -12.40240 -12.04980 -11.88683 -11.75579 -11.60208 -11.51675 -11.47820 -11.24096 -11.09975 -10.96371 -10.42000 -10.39403 -10.23322 -10.16913 -9.92222 -9.79857 -9.51220 -9.04492 -8.72533 -8.51284 -6.13172 -4.18717 0.65319 0.90679 1.02077 2.64572 3.12184 3.24006 3.24888 3.32338 3.35449 3.54790 3.99053 4.22574 4.36367 4.42958 4.44077 4.61284 4.63283 4.69075 4.72719 4.77497 4.85742 4.88180 4.99496 5.04257 5.21548 5.22274 5.22404 5.25775 5.35165 5.49401 5.61141 5.62466 5.68446 5.90361 6.03392 6.13833 6.48062 6.60426 6.93290 7.04927 7.29909 7.35848 7.53863 7.80004 8.16790 8.85029 9.46275 10.97845 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.022871 B = 0.001773 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.943497 B =15793.067675 C =16422.291415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.060 3.940 4 C 0.073 3.927 5 O -0.299 6.299 6 C 0.324 3.676 7 C -0.191 4.191 8 C -0.021 4.021 9 C -0.185 4.185 10 C 0.166 3.834 11 N -1.126 6.126 12 S 2.593 3.407 13 O -0.966 6.966 14 O -0.967 6.967 15 C -0.589 4.589 16 C 0.026 3.974 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.157 3.843 26 N -0.543 5.543 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.413 0.587 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.264 0.736 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.949 7.875 0.627 30.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.016 4.016 4 C -0.002 4.002 5 O -0.206 6.206 6 C 0.145 3.855 7 C -0.211 4.211 8 C -0.047 4.047 9 C -0.189 4.189 10 C 0.039 3.961 11 N -0.883 5.883 12 S 2.691 3.309 13 O -0.957 6.957 14 O -0.957 6.957 15 C -0.722 4.722 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C 0.000 4.000 26 N -0.266 5.266 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.246 0.754 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -30.010 7.241 0.512 30.875 hybrid contribution 0.650 0.939 0.555 1.270 sum -29.360 8.180 1.067 30.497 Atomic orbital electron populations 1.22766 0.80765 1.03067 0.99980 1.87977 1.19891 1.27161 1.95417 1.22654 0.91800 0.85760 1.01430 1.22665 0.92526 0.98980 0.86046 1.86285 1.17885 1.76376 1.40042 1.19872 0.83950 0.91312 0.90366 1.21082 0.96196 1.05599 0.98243 1.21458 0.91748 0.93155 0.98367 1.20696 0.96695 1.04847 0.96628 1.20015 0.90442 0.85099 1.00545 1.55927 1.34322 1.30336 1.67695 1.05558 0.74075 0.75901 0.75377 1.93558 1.85613 1.39456 1.77027 1.93538 1.85506 1.87171 1.29440 1.30441 1.14288 1.14960 1.12560 1.18974 0.85398 0.98028 0.98852 1.21044 0.90668 1.10136 1.34110 0.91973 1.25065 0.98526 0.95579 0.95319 1.69964 1.14052 1.27485 1.41303 0.86419 0.80857 0.80792 0.79230 1.19662 1.20827 1.20814 1.22408 0.89380 0.92336 0.95857 1.67375 1.05433 1.23319 1.30487 0.89425 0.94014 0.93915 0.90952 0.92161 0.89882 0.90536 0.83968 0.83570 0.89114 0.90468 0.75379 0.86269 0.86038 0.94815 0.94771 0.92590 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.40 10.67 -40.09 -0.43 -3.83 16 3 C 0.06 0.39 6.32 37.16 0.23 0.63 16 4 C 0.07 0.60 5.69 37.16 0.21 0.81 16 5 O -0.30 -3.17 10.08 -23.59 -0.24 -3.40 16 6 C 0.32 3.51 7.49 -17.12 -0.13 3.38 16 7 C -0.19 -1.82 10.04 -39.28 -0.39 -2.21 16 8 C -0.02 -0.20 9.85 -39.31 -0.39 -0.58 16 9 C -0.18 -1.75 5.29 -104.47 -0.55 -2.30 16 10 C 0.17 1.64 6.28 -5.19 -0.03 1.61 16 11 N -1.13 -13.39 5.88 -11.65 -0.07 -13.46 16 12 S 2.59 43.66 5.46 -107.50 -0.59 43.07 16 13 O -0.97 -19.50 18.08 -57.54 -1.04 -20.54 16 14 O -0.97 -19.00 17.50 -57.54 -1.01 -20.01 16 15 C -0.59 -10.62 6.01 37.15 0.22 -10.40 16 16 C 0.03 0.66 4.98 -27.89 -0.14 0.52 16 17 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 21 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.16 1.48 10.85 -17.56 -0.19 1.29 16 26 N -0.54 -5.84 9.22 -13.33 -0.12 -5.96 16 27 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.09 0.92 7.65 -51.93 -0.40 0.52 16 37 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.41 4.38 8.61 -34.47 -0.30 4.08 16 39 H 0.12 1.87 8.14 -51.92 -0.42 1.45 16 40 H 0.12 1.97 8.14 -51.93 -0.42 1.54 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -37.02 393.46 -8.87 -45.89 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.57 Total: 0.75 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -0.45 Total: -18.91 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.55 Total: -44.91 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -2.71 Total: -47.77 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 43.66 SS G_CDS: -0.59 Total: 43.07 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.02 -8.87 -45.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522024856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.694 kcal (2) G-P(sol) polarization free energy of solvation -37.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds