Wall clock time and date at job start Wed Apr 1 2020 02:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35895 * 116.99851 * 2 1 4 4 C 1.38753 * 120.05966 * 359.95699 * 3 2 1 5 5 C 1.38115 * 119.94360 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.06108 * 359.97438 * 5 4 3 7 7 C 1.38250 * 120.10716 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05697 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.03171 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47005 * 144.99782 * 9 8 7 11 11 C 1.53000 * 109.47487 * 265.00482 * 9 8 7 12 12 O 1.42906 * 109.46883 * 55.82575 * 11 9 8 13 13 N 1.46505 * 109.46745 * 25.00407 * 9 8 7 14 14 S 1.65599 * 120.00345 * 142.56867 * 13 9 8 15 15 O 1.42097 * 106.40579 * 177.27733 * 14 13 9 16 16 O 1.42106 * 106.39971 * 310.20199 * 14 13 9 17 17 N 1.65607 * 107.21456 * 63.73507 * 14 13 9 18 18 C 1.46497 * 119.99948 * 264.22448 * 17 14 13 19 19 C 1.46498 * 119.99613 * 84.22876 * 17 14 13 20 20 C 1.50699 * 109.47318 * 95.66632 * 19 17 14 21 21 H 1.08000 * 120.00125 * 4.88982 * 20 19 17 22 22 C 1.37879 * 119.99833 * 184.89532 * 20 19 17 23 23 N 1.31511 * 120.00280 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99582 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47313 * 90.00082 * 24 22 20 26 26 H 1.48506 * 109.46505 * 209.99602 * 24 22 20 27 27 H 1.48501 * 109.47220 * 329.99112 * 24 22 20 28 28 H 1.09004 * 109.46855 * 59.99808 * 1 2 3 29 29 H 1.08995 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46655 * 299.99925 * 1 2 3 31 31 H 1.07994 * 120.02301 * 0.04407 * 4 3 2 32 32 H 1.07998 * 119.97284 * 180.25647 * 5 4 3 33 33 H 1.07998 * 119.94586 * 180.02562 * 6 5 4 34 34 H 1.07997 * 119.96957 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.46926 * 175.82263 * 11 9 8 36 36 H 1.08995 * 109.47084 * 295.82971 * 11 9 8 37 37 H 0.96704 * 113.99626 * 180.02562 * 12 11 9 38 38 H 0.97002 * 120.00104 * 322.56850 * 13 9 8 39 39 H 1.09001 * 109.47354 * 90.00584 * 18 17 14 40 40 H 1.09005 * 109.46790 * 210.00268 * 18 17 14 41 41 H 1.09000 * 109.47131 * 329.99787 * 18 17 14 42 42 H 1.09005 * 109.46599 * 215.66298 * 19 17 14 43 43 H 1.09000 * 109.47041 * 335.66104 * 19 17 14 44 44 H 0.96996 * 119.99865 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6047 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 -0.0002 9 6 4.2537 0.0220 0.0002 10 1 3.7463 -0.7419 0.5893 11 6 4.4278 -0.4738 -1.4367 12 8 5.0049 0.5638 -2.2320 13 7 5.5688 0.2961 0.5850 14 16 6.3008 -0.8376 1.5449 15 8 7.5705 -0.3057 1.8971 16 8 5.3317 -1.2367 2.5046 17 7 6.5957 -2.1643 0.5986 18 6 5.6476 -3.2811 0.5871 19 6 7.8047 -2.2211 -0.2267 20 6 8.8820 -2.9732 0.5114 21 1 8.6624 -3.4371 1.4617 22 6 10.1479 -3.0691 -0.0265 23 7 10.4152 -2.5046 -1.1838 24 14 11.4830 -4.0020 0.8882 25 1 11.4669 -5.4267 0.4696 26 1 12.8070 -3.4082 0.5721 27 1 11.2367 -3.9126 2.3499 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2129 2.3203 -0.0009 32 1 1.3342 4.5113 0.0021 33 1 3.7923 4.6380 -0.0005 34 1 5.1345 2.5751 0.0006 35 1 5.0837 -1.3443 -1.4437 36 1 3.4558 -0.7479 -1.8467 37 1 5.1438 0.3191 -3.1572 38 1 6.0108 1.1416 0.4099 39 1 4.9031 -3.1177 -0.1922 40 1 6.1827 -4.2099 0.3893 41 1 5.1516 -3.3467 1.5555 42 1 7.5814 -2.7321 -1.1634 43 1 8.1482 -1.2085 -0.4382 44 1 11.3057 -2.5723 -1.5623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532774515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:33 Heat of formation + Delta-G solvation = -124.652693 kcal Electronic energy + Delta-G solvation = -29593.693713 eV Core-core repulsion = 25445.956739 eV Total energy + Delta-G solvation = -4147.736975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.49118 -37.98122 -36.93804 -36.50286 -35.45723 -35.10272 -34.70829 -32.40770 -30.97480 -30.27788 -28.05126 -27.68714 -27.39431 -25.03859 -23.51925 -22.33001 -22.19096 -20.93660 -19.10254 -18.19919 -17.53737 -16.90264 -16.83187 -16.43878 -16.28615 -15.94777 -15.87236 -15.36745 -14.92487 -14.66142 -14.38665 -14.13139 -13.79468 -13.78028 -13.30797 -13.21941 -13.02202 -12.49692 -12.26924 -12.24927 -12.14359 -11.89101 -11.57199 -11.44991 -11.39875 -11.32079 -11.25211 -11.11766 -11.04244 -10.91765 -10.66622 -10.48726 -10.01720 -9.85136 -9.72143 -9.35864 -8.90881 -8.42121 -8.24530 -8.03776 -6.03867 -4.07391 1.20636 1.30541 1.37099 3.10892 3.33281 3.39896 3.45758 3.52019 3.68414 4.19075 4.32731 4.47487 4.54545 4.68329 4.82737 4.92336 4.94702 5.08870 5.13687 5.23113 5.26661 5.31509 5.33389 5.39586 5.45882 5.60808 5.69833 5.70522 5.89890 5.96131 6.03136 6.19543 6.31894 6.39184 6.53152 6.57332 6.68655 7.16003 7.23440 7.30678 7.44261 7.65556 7.76213 7.94087 8.23548 8.95004 9.57739 11.04701 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.003319 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.515931 B = 8434.969859 C = 8634.768090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.130 3.870 4 C -0.209 4.209 5 C -0.085 4.085 6 C -0.156 4.156 7 C -0.055 4.055 8 C -0.102 4.102 9 C 0.207 3.793 10 H 0.111 0.889 11 C 0.063 3.937 12 O -0.561 6.561 13 N -1.122 6.122 14 S 2.780 3.220 15 O -0.962 6.962 16 O -0.998 6.998 17 N -0.996 5.996 18 C 0.093 3.907 19 C 0.260 3.740 20 C -0.528 4.528 21 H 0.060 0.940 22 C 0.062 3.938 23 N -0.896 5.896 24 Si 0.897 3.103 25 H -0.281 1.281 26 H -0.285 1.285 27 H -0.272 1.272 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.377 0.623 38 H 0.414 0.586 39 H 0.037 0.963 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.031 0.969 43 H 0.040 0.960 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.078 8.252 -2.773 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.084 3.916 4 C -0.228 4.228 5 C -0.104 4.104 6 C -0.174 4.174 7 C -0.074 4.074 8 C -0.104 4.104 9 C 0.099 3.901 10 H 0.129 0.871 11 C -0.016 4.016 12 O -0.366 6.366 13 N -0.881 5.881 14 S 2.788 3.212 15 O -0.946 6.946 16 O -0.982 6.982 17 N -0.839 5.839 18 C -0.054 4.054 19 C 0.138 3.862 20 C -0.567 4.567 21 H 0.079 0.921 22 C -0.140 4.140 23 N -0.535 5.535 24 Si 0.724 3.276 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.197 1.197 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.224 0.776 38 H 0.249 0.751 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.743 8.308 -1.359 22.386 hybrid contribution 0.646 -0.343 -0.700 1.012 sum -20.097 7.965 -2.059 21.716 Atomic orbital electron populations 1.23051 0.78452 1.03984 1.01194 1.86073 1.21303 1.26771 1.88680 1.18753 0.91395 0.84402 0.97016 1.21125 0.99743 0.92291 1.09634 1.20894 0.94685 0.96811 0.97972 1.21048 0.93859 0.98388 1.04107 1.20767 1.00174 0.90769 0.95645 1.19130 0.90026 0.95655 1.05597 1.19470 0.82546 0.95166 0.92936 0.87084 1.22719 0.97357 0.90609 0.90952 1.86465 1.85129 1.40362 1.24645 1.56317 1.28420 1.33535 1.69816 1.02006 0.72827 0.72991 0.73422 1.93649 1.40244 1.79007 1.81653 1.93527 1.63382 1.82825 1.58444 1.57637 1.32025 1.30503 1.63762 1.21386 0.91911 0.91361 1.00723 1.19018 0.79151 0.98270 0.89758 1.21503 0.95092 1.33756 1.06396 0.92139 1.24929 0.98380 0.95678 0.95034 1.69915 1.21704 1.44191 1.17667 0.86517 0.81056 0.79589 0.80402 1.20678 1.21091 1.19708 0.92775 0.88168 0.92684 0.85582 0.86026 0.85852 0.85203 0.91828 0.92938 0.77647 0.75120 0.94438 0.90350 0.91469 0.95137 0.94219 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.59 9.63 -19.41 -0.19 -3.77 16 3 C 0.13 1.61 6.66 -39.21 -0.26 1.35 16 4 C -0.21 -2.16 9.04 -39.44 -0.36 -2.51 16 5 C -0.09 -0.84 10.04 -39.61 -0.40 -1.24 16 6 C -0.16 -1.69 10.04 -39.56 -0.40 -2.09 16 7 C -0.06 -0.71 9.05 -39.60 -0.36 -1.06 16 8 C -0.10 -1.39 4.68 -104.47 -0.49 -1.88 16 9 C 0.21 3.02 2.67 -69.08 -0.18 2.83 16 10 H 0.11 1.65 7.08 -51.93 -0.37 1.28 16 11 C 0.06 0.83 6.87 37.16 0.26 1.09 16 12 O -0.56 -7.30 12.89 -35.23 -0.45 -7.75 16 13 N -1.12 -18.41 5.29 -5.88 -0.03 -18.44 16 14 S 2.78 56.89 6.02 -107.50 -0.65 56.25 16 15 O -0.96 -23.71 17.31 -57.17 -0.99 -24.70 16 16 O -1.00 -21.27 16.05 -57.17 -0.92 -22.19 16 17 N -1.00 -20.57 2.89 -123.05 -0.36 -20.92 16 18 C 0.09 1.57 10.59 59.85 0.63 2.21 16 19 C 0.26 6.45 5.08 -5.20 -0.03 6.42 16 20 C -0.53 -14.85 9.38 -34.44 -0.32 -15.17 16 21 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 23 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 24 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.61 6.09 -52.49 -0.32 1.29 16 35 H 0.06 0.89 6.92 -51.93 -0.36 0.53 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.38 3.49 9.12 45.56 0.42 3.91 16 38 H 0.41 6.32 6.63 -34.47 -0.23 6.09 16 39 H 0.04 0.52 7.32 -51.93 -0.38 0.14 16 40 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 41 H 0.07 1.10 7.00 -51.93 -0.36 0.73 16 42 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 43 H 0.04 1.06 7.75 -51.93 -0.40 0.66 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -36.17 377.86 -8.39 -44.56 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.21 Total: 6.92 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.01 Total: -7.21 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: 0.35 Total: -64.79 kcal Atomic # 8 Polarization: -55.86 SS G_CDS: -2.55 Total: -58.41 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 56.89 SS G_CDS: -0.65 Total: 56.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.17 -8.39 -44.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532774515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.089 kcal (2) G-P(sol) polarization free energy of solvation -36.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds