Wall clock time and date at job start Wed Apr 1 2020 02:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35895 * 116.99851 * 2 1 4 4 C 1.38753 * 120.05966 * 359.95699 * 3 2 1 5 5 C 1.38115 * 119.94360 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.06108 * 359.97438 * 5 4 3 7 7 C 1.38250 * 120.10716 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05697 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.03171 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47005 * 144.99782 * 9 8 7 11 11 C 1.53000 * 109.47487 * 265.00482 * 9 8 7 12 12 O 1.42906 * 109.46883 * 55.82575 * 11 9 8 13 13 N 1.46505 * 109.46745 * 25.00407 * 9 8 7 14 14 S 1.65599 * 120.00345 * 142.56867 * 13 9 8 15 15 O 1.42097 * 106.40579 * 177.27733 * 14 13 9 16 16 O 1.42106 * 106.39971 * 310.20199 * 14 13 9 17 17 N 1.65607 * 107.21456 * 63.73507 * 14 13 9 18 18 C 1.46497 * 119.99948 * 264.22448 * 17 14 13 19 19 C 1.46498 * 119.99613 * 84.22876 * 17 14 13 20 20 C 1.50699 * 109.47318 * 95.66632 * 19 17 14 21 21 H 1.08000 * 120.00125 * 4.88982 * 20 19 17 22 22 C 1.37879 * 119.99833 * 184.89532 * 20 19 17 23 23 N 1.31511 * 120.00280 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99582 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47313 * 90.00082 * 24 22 20 26 26 H 1.48506 * 109.46505 * 209.99602 * 24 22 20 27 27 H 1.48501 * 109.47220 * 329.99112 * 24 22 20 28 28 H 1.09004 * 109.46855 * 59.99808 * 1 2 3 29 29 H 1.08995 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46655 * 299.99925 * 1 2 3 31 31 H 1.07994 * 120.02301 * 0.04407 * 4 3 2 32 32 H 1.07998 * 119.97284 * 180.25647 * 5 4 3 33 33 H 1.07998 * 119.94586 * 180.02562 * 6 5 4 34 34 H 1.07997 * 119.96957 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.46926 * 175.82263 * 11 9 8 36 36 H 1.08995 * 109.47084 * 295.82971 * 11 9 8 37 37 H 0.96704 * 113.99626 * 180.02562 * 12 11 9 38 38 H 0.97002 * 120.00104 * 322.56850 * 13 9 8 39 39 H 1.09001 * 109.47354 * 90.00584 * 18 17 14 40 40 H 1.09005 * 109.46790 * 210.00268 * 18 17 14 41 41 H 1.09000 * 109.47131 * 329.99787 * 18 17 14 42 42 H 1.09005 * 109.46599 * 215.66298 * 19 17 14 43 43 H 1.09000 * 109.47041 * 335.66104 * 19 17 14 44 44 H 0.96996 * 119.99865 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6047 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 -0.0002 9 6 4.2537 0.0220 0.0002 10 1 3.7463 -0.7419 0.5893 11 6 4.4278 -0.4738 -1.4367 12 8 5.0049 0.5638 -2.2320 13 7 5.5688 0.2961 0.5850 14 16 6.3008 -0.8376 1.5449 15 8 7.5705 -0.3057 1.8971 16 8 5.3317 -1.2367 2.5046 17 7 6.5957 -2.1643 0.5986 18 6 5.6476 -3.2811 0.5871 19 6 7.8047 -2.2211 -0.2267 20 6 8.8820 -2.9732 0.5114 21 1 8.6624 -3.4371 1.4617 22 6 10.1479 -3.0691 -0.0265 23 7 10.4152 -2.5046 -1.1838 24 14 11.4830 -4.0020 0.8882 25 1 11.4669 -5.4267 0.4696 26 1 12.8070 -3.4082 0.5721 27 1 11.2367 -3.9126 2.3499 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2129 2.3203 -0.0009 32 1 1.3342 4.5113 0.0021 33 1 3.7923 4.6380 -0.0005 34 1 5.1345 2.5751 0.0006 35 1 5.0837 -1.3443 -1.4437 36 1 3.4558 -0.7479 -1.8467 37 1 5.1438 0.3191 -3.1572 38 1 6.0108 1.1416 0.4099 39 1 4.9031 -3.1177 -0.1922 40 1 6.1827 -4.2099 0.3893 41 1 5.1516 -3.3467 1.5555 42 1 7.5814 -2.7321 -1.1634 43 1 8.1482 -1.2085 -0.4382 44 1 11.3057 -2.5723 -1.5623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532774515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:32 Heat of formation + Delta-G solvation = -154.108507 kcal Electronic energy + Delta-G solvation = -29594.971013 eV Core-core repulsion = 25445.956739 eV Total energy + Delta-G solvation = -4149.014275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32410 -38.91392 -38.28145 -37.81415 -37.19454 -36.87703 -35.83227 -34.49267 -31.98031 -31.09007 -29.67446 -28.98491 -28.03472 -26.77514 -24.47705 -24.20691 -23.08918 -21.94376 -20.47873 -19.35568 -18.87516 -18.45548 -18.31275 -17.99398 -17.55728 -16.94489 -16.87647 -16.62541 -16.33156 -15.89524 -15.59070 -15.27971 -15.00081 -14.96030 -14.64068 -14.52305 -14.06116 -14.01805 -13.94099 -13.38030 -13.31787 -13.14955 -13.08560 -13.02215 -12.92327 -12.81640 -12.71379 -12.47442 -12.36081 -12.25142 -11.98097 -11.95175 -11.78946 -11.73822 -10.85305 -10.64908 -10.56268 -9.81807 -9.74824 -9.07334 -8.19084 -6.30298 -0.34849 0.39368 0.51920 1.38966 1.41815 1.52183 1.98765 2.40991 2.41594 2.59848 2.83465 3.12027 3.32782 3.45805 3.63687 3.91885 4.02281 4.12483 4.15783 4.25158 4.35240 4.43352 4.46325 4.48864 4.53447 4.62393 4.73727 4.77727 4.81307 4.84292 4.92314 5.04808 5.08804 5.21518 5.37754 5.45170 5.54600 5.64764 5.71049 5.86293 5.88342 6.06930 6.13943 6.48025 6.77777 6.93224 7.38349 8.88373 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.003319 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.515931 B = 8434.969859 C = 8634.768090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.119 3.881 4 C -0.209 4.209 5 C -0.082 4.082 6 C -0.163 4.163 7 C -0.075 4.075 8 C -0.126 4.126 9 C 0.202 3.798 10 H 0.106 0.894 11 C 0.069 3.931 12 O -0.574 6.574 13 N -1.110 6.110 14 S 2.796 3.204 15 O -1.009 7.009 16 O -1.008 7.008 17 N -0.999 5.999 18 C 0.085 3.915 19 C 0.277 3.723 20 C -0.550 4.550 21 H 0.052 0.948 22 C 0.012 3.988 23 N -0.923 5.923 24 Si 0.955 3.045 25 H -0.264 1.264 26 H -0.280 1.280 27 H -0.276 1.276 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.122 0.878 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.392 0.608 38 H 0.418 0.582 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.015 0.985 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.108 8.519 -3.122 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.074 3.926 4 C -0.227 4.227 5 C -0.100 4.100 6 C -0.181 4.181 7 C -0.093 4.093 8 C -0.129 4.129 9 C 0.095 3.905 10 H 0.124 0.876 11 C -0.011 4.011 12 O -0.381 6.381 13 N -0.873 5.873 14 S 2.804 3.196 15 O -0.993 6.993 16 O -0.991 6.991 17 N -0.842 5.842 18 C -0.060 4.060 19 C 0.154 3.846 20 C -0.589 4.589 21 H 0.071 0.929 22 C -0.187 4.187 23 N -0.563 5.563 24 Si 0.780 3.220 25 H -0.189 1.189 26 H -0.205 1.205 27 H -0.201 1.201 28 H 0.087 0.913 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.140 0.860 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.241 0.759 38 H 0.255 0.745 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.033 0.967 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.800 8.554 -1.718 24.413 hybrid contribution 1.116 -0.369 -0.616 1.327 sum -21.684 8.186 -2.334 23.295 Atomic orbital electron populations 1.23353 0.76364 1.05551 1.02320 1.86043 1.23523 1.26602 1.88611 1.18896 0.91138 0.85496 0.97119 1.21479 1.01119 0.91686 1.08426 1.21302 0.94465 0.97968 0.96247 1.21324 0.94613 0.98475 1.03672 1.20859 1.00151 0.91513 0.96825 1.19122 0.90845 0.95152 1.07761 1.19631 0.81305 0.96084 0.93481 0.87605 1.22628 0.98048 0.90017 0.90405 1.86432 1.85211 1.40575 1.25915 1.55923 1.29192 1.32642 1.69494 1.01258 0.71861 0.72950 0.73493 1.93578 1.42969 1.79903 1.82892 1.93505 1.63206 1.83211 1.59197 1.57466 1.31669 1.31993 1.63035 1.21633 0.91857 0.90074 1.02433 1.18570 0.79952 0.96254 0.89836 1.21860 0.96469 1.34184 1.06373 0.92945 1.25726 1.00547 0.96565 0.95875 1.70003 1.22381 1.45115 1.18768 0.85601 0.78401 0.79153 0.78819 1.18930 1.20494 1.20076 0.91304 0.86558 0.91792 0.82854 0.82911 0.84043 0.85985 0.92885 0.90979 0.75881 0.74488 0.90938 0.90591 0.90812 0.95200 0.96662 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.05 9.63 -92.37 -0.89 -7.94 16 3 C 0.12 2.77 6.66 22.51 0.15 2.92 16 4 C -0.21 -3.74 9.04 22.36 0.20 -3.53 16 5 C -0.08 -1.38 10.04 22.25 0.22 -1.16 16 6 C -0.16 -3.28 10.04 22.29 0.22 -3.05 16 7 C -0.07 -1.90 9.05 22.26 0.20 -1.69 16 8 C -0.13 -3.39 4.68 -19.77 -0.09 -3.48 16 9 C 0.20 5.87 2.67 44.24 0.12 5.98 16 10 H 0.11 3.13 7.08 -2.39 -0.02 3.11 16 11 C 0.07 1.76 6.87 71.98 0.49 2.26 16 12 O -0.57 -14.72 12.89 -148.98 -1.92 -16.65 16 13 N -1.11 -37.24 5.29 -172.52 -0.91 -38.15 16 14 S 2.80 117.03 6.02 -56.49 -0.34 116.69 16 15 O -1.01 -51.60 17.31 -128.00 -2.22 -53.82 16 16 O -1.01 -43.25 16.05 -128.00 -2.05 -45.30 16 17 N -1.00 -41.77 2.89 -543.22 -1.57 -43.34 16 18 C 0.09 2.84 10.59 127.77 1.35 4.19 16 19 C 0.28 14.07 5.08 85.63 0.44 14.51 16 20 C -0.55 -31.41 9.38 25.60 0.24 -31.17 16 21 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 22 C 0.01 0.71 5.46 84.66 0.46 1.17 16 23 N -0.92 -54.44 13.29 21.45 0.28 -54.16 16 24 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 25 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 27 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 28 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 29 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 31 H 0.15 1.80 6.30 -2.91 -0.02 1.78 16 32 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.12 3.12 6.09 -2.91 -0.02 3.10 16 35 H 0.05 1.45 6.92 -2.39 -0.02 1.44 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.39 7.02 9.12 -74.05 -0.68 6.34 16 38 H 0.42 13.32 6.63 -96.75 -0.64 12.68 16 39 H 0.07 1.90 7.32 -2.39 -0.02 1.88 16 40 H 0.08 2.56 8.07 -2.38 -0.02 2.54 16 41 H 0.07 2.36 7.00 -2.39 -0.02 2.34 16 42 H 0.03 1.51 8.11 -2.38 -0.02 1.49 16 43 H 0.02 0.85 7.75 -2.39 -0.02 0.83 16 44 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -78.11 377.86 -2.74 -80.85 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.27 Total: 26.34 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 5.12 Total: -11.73 kcal Atomic # 7 Polarization: -133.45 SS G_CDS: -2.20 Total: -135.65 kcal Atomic # 8 Polarization: -116.62 SS G_CDS: -7.08 Total: -123.70 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 117.03 SS G_CDS: -0.34 Total: 116.69 kcal Total: -78.11 -2.74 -80.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532774515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.261 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds