Wall clock time and date at job start Wed Apr 1 2020 02:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35907 * 116.99423 * 2 1 4 4 C 1.38750 * 120.05740 * 354.69673 * 3 2 1 5 5 C 1.38119 * 119.94309 * 180.25388 * 4 3 2 6 6 C 1.38287 * 120.05549 * 0.04476 * 5 4 3 7 7 C 1.38239 * 120.11511 * 359.95552 * 6 5 4 8 8 C 1.38171 * 120.05236 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.02611 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.47200 * 214.46653 * 9 8 7 11 11 C 1.52997 * 109.47216 * 94.46771 * 9 8 7 12 12 O 1.42901 * 109.47079 * 304.99796 * 11 9 8 13 13 N 1.46499 * 109.47388 * 334.46503 * 9 8 7 14 14 S 1.65600 * 120.00345 * 264.97263 * 13 9 8 15 15 O 1.42102 * 106.39808 * 48.15609 * 14 13 9 16 16 O 1.42101 * 106.40407 * 181.07370 * 14 13 9 17 17 N 1.65593 * 107.21793 * 294.61524 * 14 13 9 18 18 C 1.46505 * 120.00237 * 95.64627 * 17 14 13 19 19 C 1.46498 * 120.00026 * 275.64043 * 17 14 13 20 20 C 1.50705 * 109.47062 * 95.20938 * 19 17 14 21 21 H 1.07997 * 119.99568 * 4.95861 * 20 19 17 22 22 C 1.37879 * 119.99954 * 184.96195 * 20 19 17 23 23 N 1.31513 * 119.99963 * 5.17188 * 22 20 19 24 24 Si 1.86800 * 119.99745 * 185.17321 * 22 20 19 25 25 H 1.48495 * 109.47339 * 5.00290 * 24 22 20 26 26 H 1.48505 * 109.47158 * 125.00417 * 24 22 20 27 27 H 1.48501 * 109.47068 * 245.00081 * 24 22 20 28 28 H 1.09003 * 109.47024 * 64.72438 * 1 2 3 29 29 H 1.09006 * 109.46879 * 184.71531 * 1 2 3 30 30 H 1.08996 * 109.47733 * 304.72080 * 1 2 3 31 31 H 1.08005 * 120.03066 * 0.25244 * 4 3 2 32 32 H 1.08006 * 119.97480 * 180.02562 * 5 4 3 33 33 H 1.08011 * 119.94448 * 179.97438 * 6 5 4 34 34 H 1.07995 * 119.97734 * 180.02562 * 7 6 5 35 35 H 1.09006 * 109.47214 * 65.00127 * 11 9 8 36 36 H 1.09005 * 109.47397 * 184.99942 * 11 9 8 37 37 H 0.96705 * 113.99707 * 179.97438 * 12 11 9 38 38 H 0.97001 * 119.99737 * 84.97313 * 13 9 8 39 39 H 1.09003 * 109.46904 * 89.99875 * 18 17 14 40 40 H 1.08999 * 109.46752 * 210.00003 * 18 17 14 41 41 H 1.09000 * 109.46569 * 329.99458 * 18 17 14 42 42 H 1.08998 * 109.47553 * 215.21040 * 19 17 14 43 43 H 1.09003 * 109.47432 * 335.20943 * 19 17 14 44 44 H 0.97007 * 119.99666 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2959 2.3730 -0.1110 5 6 1.9257 3.6022 -0.1160 6 6 3.3026 3.6754 -0.0115 7 6 4.0522 2.5192 0.0992 8 6 3.4269 1.2871 0.1051 9 6 4.2446 0.0271 0.2264 10 1 3.7790 -0.7660 -0.3588 11 6 4.3141 -0.3965 1.6949 12 8 4.8168 0.6867 2.4798 13 7 5.5987 0.2734 -0.2754 14 16 5.9820 -0.1006 -1.8424 15 8 4.9483 0.4464 -2.6497 16 8 7.3544 0.2277 -2.0092 17 7 5.8729 -1.7460 -1.9944 18 6 4.6420 -2.3545 -2.5053 19 6 7.0073 -2.5931 -1.6180 20 6 6.8250 -3.0770 -0.2025 21 1 5.9150 -2.8496 0.3329 22 6 7.8200 -3.8099 0.4091 23 7 8.9678 -4.0002 -0.2040 24 14 7.5375 -4.5324 2.1084 25 1 6.1349 -4.2813 2.5262 26 1 7.7889 -5.9956 2.0722 27 1 8.4645 -3.8948 3.0777 28 1 -0.3633 0.4388 -0.9293 29 1 -0.3633 -1.0243 0.0845 30 1 -0.3634 0.5853 0.8446 31 1 0.2205 2.3164 -0.1934 32 1 1.3423 4.5071 -0.2020 33 1 3.7933 4.6376 -0.0160 34 1 5.1274 2.5789 0.1811 35 1 3.3168 -0.6653 2.0432 36 1 4.9775 -1.2557 1.7943 37 1 4.8875 0.4888 3.4237 38 1 6.2709 0.6556 0.3103 39 1 4.7028 -2.4411 -3.5902 40 1 4.5179 -3.3451 -2.0680 41 1 3.7898 -1.7298 -2.2377 42 1 7.0604 -3.4492 -2.2906 43 1 7.9301 -2.0174 -1.6892 44 1 9.6677 -4.5162 0.2261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532774516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:37 Heat of formation + Delta-G solvation = -129.254171 kcal Electronic energy + Delta-G solvation = -30180.580399 eV Core-core repulsion = 26032.643889 eV Total energy + Delta-G solvation = -4147.936510 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30268 -37.82814 -36.81247 -36.50982 -35.45972 -35.12744 -34.57061 -32.49111 -30.80700 -30.07867 -27.90753 -27.74560 -27.24041 -25.05761 -23.36920 -22.30986 -21.99497 -20.80552 -18.89161 -18.12356 -17.47248 -16.92651 -16.74200 -16.33157 -16.27612 -15.96494 -15.74921 -15.37852 -14.88314 -14.46293 -14.35003 -14.07310 -13.64035 -13.45794 -13.42958 -13.20891 -12.87658 -12.36365 -12.30418 -12.15965 -12.10027 -11.83638 -11.63071 -11.40033 -11.36062 -11.15998 -11.14065 -11.12053 -11.04055 -10.91177 -10.72926 -10.49120 -10.13775 -9.86725 -9.71219 -9.19983 -8.70882 -8.50574 -8.07255 -8.01574 -6.12050 -4.18013 1.35329 1.46673 1.54738 3.21506 3.26687 3.28985 3.30959 3.55546 3.86154 4.19322 4.34121 4.46592 4.72673 4.84958 4.98855 5.04200 5.08099 5.13236 5.20398 5.22076 5.31514 5.39889 5.48842 5.50644 5.57708 5.71111 5.83190 5.92966 6.03797 6.09330 6.13541 6.30640 6.41240 6.55463 6.58409 6.72804 6.88635 7.27473 7.40615 7.41606 7.51963 7.68636 7.77076 7.85715 8.15236 8.86539 9.47202 10.95929 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.004555 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.984825 B = 6146.232964 C = 6727.468719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.131 3.869 4 C -0.211 4.211 5 C -0.087 4.087 6 C -0.159 4.159 7 C -0.048 4.048 8 C -0.108 4.108 9 C 0.217 3.783 10 H 0.103 0.897 11 C 0.075 3.925 12 O -0.566 6.566 13 N -1.113 6.113 14 S 2.785 3.215 15 O -0.994 6.994 16 O -0.981 6.981 17 N -0.998 5.998 18 C 0.103 3.897 19 C 0.243 3.757 20 C -0.537 4.537 21 H 0.063 0.937 22 C 0.064 3.936 23 N -0.888 5.888 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.283 1.283 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.376 0.624 38 H 0.418 0.582 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.054 0.946 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.255 9.406 3.696 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.085 3.915 4 C -0.230 4.230 5 C -0.105 4.105 6 C -0.177 4.177 7 C -0.066 4.066 8 C -0.111 4.111 9 C 0.108 3.892 10 H 0.121 0.879 11 C -0.004 4.004 12 O -0.370 6.370 13 N -0.870 5.870 14 S 2.793 3.207 15 O -0.978 6.978 16 O -0.965 6.965 17 N -0.840 5.840 18 C -0.044 4.044 19 C 0.121 3.879 20 C -0.576 4.576 21 H 0.081 0.919 22 C -0.139 4.139 23 N -0.526 5.526 24 Si 0.721 3.279 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.209 1.209 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.223 0.777 38 H 0.253 0.747 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.864 9.922 2.289 18.850 hybrid contribution -0.221 -0.831 2.069 2.241 sum -16.085 9.091 4.358 18.983 Atomic orbital electron populations 1.23026 0.78670 1.03771 1.01163 1.86061 1.21123 1.26916 1.88861 1.18748 0.91546 0.84235 0.96970 1.21086 0.99669 0.92437 1.09760 1.20847 0.94671 0.96706 0.98315 1.21032 0.93963 0.98368 1.04379 1.20764 1.00173 0.90709 0.94983 1.19511 0.90269 0.96453 1.04848 1.19320 0.81451 0.93918 0.94506 0.87893 1.22427 0.98397 0.89634 0.89919 1.86447 1.88233 1.39849 1.22515 1.55973 1.17931 1.79604 1.33523 1.01777 0.72829 0.73129 0.72985 1.93562 1.59578 1.77614 1.67003 1.93589 1.34108 1.83643 1.85156 1.57637 1.22941 1.25124 1.78323 1.21284 0.85280 0.99693 0.98122 1.19224 0.82813 0.90501 0.95328 1.21567 1.02807 1.34532 0.98723 0.91901 1.24967 0.94781 0.96322 0.97872 1.69957 1.04366 1.39821 1.38444 0.86539 0.78194 0.78934 0.84234 1.19795 1.20994 1.20928 0.92770 0.88319 0.92859 0.85789 0.86232 0.86132 0.85418 0.92859 0.91203 0.77723 0.74737 0.93768 0.90816 0.92630 0.94818 0.92798 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.82 101.05 0.99 1.24 16 2 O -0.32 -4.13 9.62 -19.45 -0.19 -4.31 16 3 C 0.13 1.87 6.65 -39.22 -0.26 1.61 16 4 C -0.21 -2.59 9.03 -39.44 -0.36 -2.94 16 5 C -0.09 -1.03 10.04 -39.61 -0.40 -1.43 16 6 C -0.16 -2.07 10.04 -39.56 -0.40 -2.47 16 7 C -0.05 -0.72 9.03 -39.61 -0.36 -1.08 16 8 C -0.11 -1.69 4.67 -104.48 -0.49 -2.18 16 9 C 0.22 3.48 2.53 -69.09 -0.17 3.31 16 10 H 0.10 1.69 6.33 -51.93 -0.33 1.36 16 11 C 0.08 1.08 6.83 37.16 0.25 1.33 16 12 O -0.57 -7.41 12.61 -35.23 -0.44 -7.86 16 13 N -1.11 -19.64 4.38 -5.88 -0.03 -19.66 16 14 S 2.79 57.56 6.02 -107.50 -0.65 56.91 16 15 O -0.99 -21.22 16.78 -57.17 -0.96 -22.18 16 16 O -0.98 -23.52 16.82 -57.17 -0.96 -24.48 16 17 N -1.00 -20.94 3.23 -123.05 -0.40 -21.34 16 18 C 0.10 1.80 10.19 59.85 0.61 2.41 16 19 C 0.24 6.05 5.44 -5.19 -0.03 6.02 16 20 C -0.54 -13.75 9.38 -34.44 -0.32 -14.07 16 21 H 0.06 1.53 7.66 -52.49 -0.40 1.13 16 22 C 0.06 1.70 5.45 -17.82 -0.10 1.60 16 23 N -0.89 -25.20 13.28 55.43 0.74 -24.47 16 24 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.05 0.42 7.71 -51.93 -0.40 0.02 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.38 7.62 -51.93 -0.40 -0.01 16 31 H 0.12 1.18 6.33 -52.48 -0.33 0.85 16 32 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 34 H 0.13 1.88 7.12 -52.49 -0.37 1.51 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.09 7.98 -51.93 -0.41 0.67 16 37 H 0.38 3.37 9.12 45.56 0.42 3.79 16 38 H 0.42 7.02 8.34 -34.47 -0.29 6.73 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 41 H 0.06 0.89 6.61 -51.93 -0.34 0.54 16 42 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 43 H 0.05 1.49 6.98 -51.93 -0.36 1.13 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -34.22 379.53 -8.53 -42.75 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.31 Total: 10.42 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.03 Total: -6.66 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: 0.31 Total: -65.47 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -2.55 Total: -58.83 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 57.56 SS G_CDS: -0.65 Total: 56.91 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.22 -8.53 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532774516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.507 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds