Wall clock time and date at job start Wed Apr 1 2020 02:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35907 * 116.99423 * 2 1 4 4 C 1.38750 * 120.05740 * 354.69673 * 3 2 1 5 5 C 1.38119 * 119.94309 * 180.25388 * 4 3 2 6 6 C 1.38287 * 120.05549 * 0.04476 * 5 4 3 7 7 C 1.38239 * 120.11511 * 359.95552 * 6 5 4 8 8 C 1.38171 * 120.05236 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.02611 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.47200 * 214.46653 * 9 8 7 11 11 C 1.52997 * 109.47216 * 94.46771 * 9 8 7 12 12 O 1.42901 * 109.47079 * 304.99796 * 11 9 8 13 13 N 1.46499 * 109.47388 * 334.46503 * 9 8 7 14 14 S 1.65600 * 120.00345 * 264.97263 * 13 9 8 15 15 O 1.42102 * 106.39808 * 48.15609 * 14 13 9 16 16 O 1.42101 * 106.40407 * 181.07370 * 14 13 9 17 17 N 1.65593 * 107.21793 * 294.61524 * 14 13 9 18 18 C 1.46505 * 120.00237 * 95.64627 * 17 14 13 19 19 C 1.46498 * 120.00026 * 275.64043 * 17 14 13 20 20 C 1.50705 * 109.47062 * 95.20938 * 19 17 14 21 21 H 1.07997 * 119.99568 * 4.95861 * 20 19 17 22 22 C 1.37879 * 119.99954 * 184.96195 * 20 19 17 23 23 N 1.31513 * 119.99963 * 5.17188 * 22 20 19 24 24 Si 1.86800 * 119.99745 * 185.17321 * 22 20 19 25 25 H 1.48495 * 109.47339 * 5.00290 * 24 22 20 26 26 H 1.48505 * 109.47158 * 125.00417 * 24 22 20 27 27 H 1.48501 * 109.47068 * 245.00081 * 24 22 20 28 28 H 1.09003 * 109.47024 * 64.72438 * 1 2 3 29 29 H 1.09006 * 109.46879 * 184.71531 * 1 2 3 30 30 H 1.08996 * 109.47733 * 304.72080 * 1 2 3 31 31 H 1.08005 * 120.03066 * 0.25244 * 4 3 2 32 32 H 1.08006 * 119.97480 * 180.02562 * 5 4 3 33 33 H 1.08011 * 119.94448 * 179.97438 * 6 5 4 34 34 H 1.07995 * 119.97734 * 180.02562 * 7 6 5 35 35 H 1.09006 * 109.47214 * 65.00127 * 11 9 8 36 36 H 1.09005 * 109.47397 * 184.99942 * 11 9 8 37 37 H 0.96705 * 113.99707 * 179.97438 * 12 11 9 38 38 H 0.97001 * 119.99737 * 84.97313 * 13 9 8 39 39 H 1.09003 * 109.46904 * 89.99875 * 18 17 14 40 40 H 1.08999 * 109.46752 * 210.00003 * 18 17 14 41 41 H 1.09000 * 109.46569 * 329.99458 * 18 17 14 42 42 H 1.08998 * 109.47553 * 215.21040 * 19 17 14 43 43 H 1.09003 * 109.47432 * 335.20943 * 19 17 14 44 44 H 0.97007 * 119.99666 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2959 2.3730 -0.1110 5 6 1.9257 3.6022 -0.1160 6 6 3.3026 3.6754 -0.0115 7 6 4.0522 2.5192 0.0992 8 6 3.4269 1.2871 0.1051 9 6 4.2446 0.0271 0.2264 10 1 3.7790 -0.7660 -0.3588 11 6 4.3141 -0.3965 1.6949 12 8 4.8168 0.6867 2.4798 13 7 5.5987 0.2734 -0.2754 14 16 5.9820 -0.1006 -1.8424 15 8 4.9483 0.4464 -2.6497 16 8 7.3544 0.2277 -2.0092 17 7 5.8729 -1.7460 -1.9944 18 6 4.6420 -2.3545 -2.5053 19 6 7.0073 -2.5931 -1.6180 20 6 6.8250 -3.0770 -0.2025 21 1 5.9150 -2.8496 0.3329 22 6 7.8200 -3.8099 0.4091 23 7 8.9678 -4.0002 -0.2040 24 14 7.5375 -4.5324 2.1084 25 1 6.1349 -4.2813 2.5262 26 1 7.7889 -5.9956 2.0722 27 1 8.4645 -3.8948 3.0777 28 1 -0.3633 0.4388 -0.9293 29 1 -0.3633 -1.0243 0.0845 30 1 -0.3634 0.5853 0.8446 31 1 0.2205 2.3164 -0.1934 32 1 1.3423 4.5071 -0.2020 33 1 3.7933 4.6376 -0.0160 34 1 5.1274 2.5789 0.1811 35 1 3.3168 -0.6653 2.0432 36 1 4.9775 -1.2557 1.7943 37 1 4.8875 0.4888 3.4237 38 1 6.2709 0.6556 0.3103 39 1 4.7028 -2.4411 -3.5902 40 1 4.5179 -3.3451 -2.0680 41 1 3.7898 -1.7298 -2.2377 42 1 7.0604 -3.4492 -2.2906 43 1 7.9301 -2.0174 -1.6892 44 1 9.6677 -4.5162 0.2261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532774516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:36 Heat of formation + Delta-G solvation = -156.943212 kcal Electronic energy + Delta-G solvation = -30181.781086 eV Core-core repulsion = 26032.643889 eV Total energy + Delta-G solvation = -4149.137197 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.26405 -38.86668 -38.25134 -37.79965 -37.21144 -36.89268 -35.76487 -34.46921 -31.92663 -31.02907 -29.65607 -28.97265 -27.99645 -26.77462 -24.43714 -24.19450 -22.97114 -21.92015 -20.44031 -19.19528 -18.87114 -18.51395 -18.27857 -18.01763 -17.57145 -16.95713 -16.90529 -16.57386 -16.34525 -15.86789 -15.46091 -15.18130 -15.11290 -14.88379 -14.58546 -14.49836 -14.07541 -14.00467 -13.83031 -13.43308 -13.32417 -13.23305 -13.15354 -12.96130 -12.91057 -12.78272 -12.56287 -12.43743 -12.33298 -12.23248 -11.97845 -11.91881 -11.80850 -11.67892 -10.85960 -10.61323 -10.50909 -9.79162 -9.70477 -9.03429 -8.14705 -6.28050 -0.28243 0.45283 0.56097 1.44232 1.45478 1.56819 1.97529 2.44476 2.44830 2.58995 2.87535 3.17183 3.39297 3.44672 3.72831 3.93437 3.98153 4.10963 4.14260 4.32897 4.40915 4.44770 4.46970 4.50461 4.57485 4.68495 4.77963 4.80443 4.81680 4.86262 4.93016 5.05022 5.12060 5.28169 5.41895 5.48042 5.57673 5.70437 5.74621 5.88289 5.93045 6.12230 6.15317 6.51732 6.84178 6.93931 7.41734 8.93889 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.004555 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.984825 B = 6146.232964 C = 6727.468719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.119 3.881 4 C -0.212 4.212 5 C -0.085 4.085 6 C -0.169 4.169 7 C -0.072 4.072 8 C -0.132 4.132 9 C 0.211 3.789 10 H 0.097 0.903 11 C 0.084 3.916 12 O -0.574 6.574 13 N -1.104 6.104 14 S 2.800 3.200 15 O -1.000 7.000 16 O -1.020 7.020 17 N -1.002 6.002 18 C 0.096 3.904 19 C 0.256 3.744 20 C -0.537 4.537 21 H 0.076 0.924 22 C 0.009 3.991 23 N -0.930 5.930 24 Si 0.961 3.039 25 H -0.253 1.253 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.394 0.606 38 H 0.421 0.579 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.021 0.979 43 H 0.018 0.982 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.273 9.924 5.131 22.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.073 3.927 4 C -0.230 4.230 5 C -0.103 4.103 6 C -0.187 4.187 7 C -0.090 4.090 8 C -0.135 4.135 9 C 0.103 3.897 10 H 0.115 0.885 11 C 0.005 3.995 12 O -0.382 6.382 13 N -0.865 5.865 14 S 2.808 3.192 15 O -0.984 6.984 16 O -1.004 7.004 17 N -0.844 5.844 18 C -0.050 4.050 19 C 0.133 3.867 20 C -0.576 4.576 21 H 0.094 0.906 22 C -0.190 4.190 23 N -0.570 5.570 24 Si 0.786 3.214 25 H -0.177 1.177 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.086 0.914 31 H 0.171 0.829 32 H 0.170 0.830 33 H 0.157 0.843 34 H 0.136 0.864 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.244 0.756 38 H 0.256 0.744 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.039 0.961 43 H 0.036 0.964 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.925 10.445 3.727 21.935 hybrid contribution 0.610 -0.923 1.592 1.939 sum -18.315 9.522 5.319 21.316 Atomic orbital electron populations 1.23342 0.76465 1.05485 1.02264 1.86033 1.23448 1.26594 1.88756 1.18904 0.91345 0.85389 0.97030 1.21469 1.01131 0.91860 1.08546 1.21272 0.94400 0.97962 0.96635 1.21332 0.94816 0.98508 1.04079 1.20870 1.00116 0.91619 0.96400 1.19514 0.91164 0.96037 1.06752 1.19486 0.80188 0.94520 0.95486 0.88495 1.22263 0.98944 0.89138 0.89175 1.86420 1.88187 1.39540 1.24016 1.55672 1.19084 1.79282 1.32423 1.01157 0.71734 0.72837 0.73507 1.93543 1.59379 1.77608 1.67833 1.93531 1.36527 1.84255 1.86118 1.57518 1.23172 1.24859 1.78820 1.21516 0.84230 1.00255 0.98958 1.18823 0.82840 0.89771 0.95302 1.21851 1.03076 1.33796 0.98881 0.90568 1.25854 0.94410 0.96783 1.01966 1.70101 1.05465 1.40979 1.40485 0.85462 0.79000 0.77705 0.79205 1.17658 1.21020 1.20989 0.91893 0.86518 0.91377 0.82925 0.82966 0.84292 0.86379 0.91104 0.92691 0.75626 0.74358 0.92503 0.90080 0.90917 0.96116 0.96398 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.82 113.37 1.11 1.37 16 2 O -0.33 -8.02 9.62 -92.51 -0.89 -8.91 16 3 C 0.12 3.18 6.65 22.51 0.15 3.33 16 4 C -0.21 -4.56 9.03 22.36 0.20 -4.36 16 5 C -0.08 -1.76 10.04 22.25 0.22 -1.53 16 6 C -0.17 -4.12 10.04 22.28 0.22 -3.90 16 7 C -0.07 -2.12 9.03 22.25 0.20 -1.92 16 8 C -0.13 -4.01 4.67 -19.77 -0.09 -4.11 16 9 C 0.21 6.66 2.53 44.24 0.11 6.78 16 10 H 0.10 3.12 6.33 -2.38 -0.02 3.10 16 11 C 0.08 2.30 6.83 71.98 0.49 2.80 16 12 O -0.57 -14.40 12.61 -148.98 -1.88 -16.28 16 13 N -1.10 -39.45 4.38 -172.53 -0.76 -40.20 16 14 S 2.80 117.96 6.02 -56.49 -0.34 117.62 16 15 O -1.00 -42.79 16.78 -128.00 -2.15 -44.94 16 16 O -1.02 -50.87 16.82 -128.00 -2.15 -53.02 16 17 N -1.00 -42.53 3.23 -543.20 -1.75 -44.28 16 18 C 0.10 3.29 10.19 127.77 1.30 4.59 16 19 C 0.26 13.09 5.44 85.64 0.47 13.56 16 20 C -0.54 -27.59 9.38 25.60 0.24 -27.35 16 21 H 0.08 3.64 7.66 -2.91 -0.02 3.62 16 22 C 0.01 0.48 5.45 84.66 0.46 0.95 16 23 N -0.93 -53.97 13.28 21.45 0.28 -53.68 16 24 Si 0.96 41.08 29.54 68.60 2.03 43.11 16 25 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 27 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 28 H 0.06 0.77 7.71 -2.39 -0.02 0.75 16 29 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.07 0.75 7.62 -2.39 -0.02 0.73 16 31 H 0.15 2.29 6.33 -2.91 -0.02 2.27 16 32 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 33 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.12 3.56 7.12 -2.91 -0.02 3.54 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.05 1.65 7.98 -2.38 -0.02 1.63 16 37 H 0.39 6.41 9.12 -74.05 -0.68 5.74 16 38 H 0.42 14.51 8.34 -96.75 -0.81 13.70 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 2.65 8.07 -2.39 -0.02 2.63 16 41 H 0.07 2.24 6.61 -2.39 -0.02 2.23 16 42 H 0.02 1.10 8.11 -2.39 -0.02 1.08 16 43 H 0.02 1.04 6.98 -2.39 -0.02 1.03 16 44 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 Total: -1.00 -74.30 379.53 -2.95 -77.25 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.44 Total: 33.13 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 5.09 Total: -9.80 kcal Atomic # 7 Polarization: -135.94 SS G_CDS: -2.22 Total: -138.16 kcal Atomic # 8 Polarization: -116.08 SS G_CDS: -7.07 Total: -123.15 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 117.96 SS G_CDS: -0.34 Total: 117.62 kcal Total: -74.30 -2.95 -77.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532774516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.688 kcal (2) G-P(sol) polarization free energy of solvation -74.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds