Wall clock time and date at job start Wed Apr 1 2020 03:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99513 * 2 1 4 4 H 1.48506 * 109.46866 * 239.99810 * 3 2 1 5 5 H 1.48499 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47343 * 119.99952 * 3 2 1 7 7 C 1.37874 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00099 * 0.02562 * 7 2 1 10 10 C 1.53121 * 109.52311 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.27841 * 177.55692 * 10 9 7 12 12 N 1.46844 * 109.52409 * 300.82577 * 11 10 9 13 13 C 1.39311 * 111.00039 * 185.83970 * 12 11 10 14 14 C 1.38098 * 119.63737 * 300.02300 * 13 12 11 15 15 C 1.39877 * 119.42999 * 180.02562 * 14 13 12 16 16 N 1.34188 * 121.89429 * 180.02562 * 15 14 13 17 17 C 1.31172 * 120.39139 * 179.20983 * 16 15 14 18 18 N 1.32386 * 122.91514 * 0.75961 * 17 16 15 19 19 C 1.32468 * 121.55546 * 359.49726 * 18 17 16 20 20 O 1.35289 * 120.86278 * 179.97438 * 19 18 17 21 21 C 1.41260 * 118.26869 * 359.97438 * 19 18 17 22 22 C 1.40106 * 121.96230 * 180.02562 * 21 19 18 23 23 C 1.36122 * 119.74328 * 179.72623 * 22 21 19 24 24 N 1.48022 * 119.58226 * 180.26169 * 23 22 21 25 25 O 1.21796 * 120.00629 * 359.97438 * 24 23 22 26 26 O 1.21809 * 119.99700 * 180.02562 * 24 23 22 27 27 C 1.46845 * 111.19939 * 61.74045 * 12 11 10 28 28 C 1.53042 * 109.52322 * 298.25609 * 27 12 11 29 29 H 0.96997 * 120.00625 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.57183 * 59.83734 * 9 7 2 31 31 H 1.09001 * 109.49987 * 57.61839 * 10 9 7 32 32 H 1.09001 * 109.50332 * 297.50229 * 10 9 7 33 33 H 1.08995 * 109.46304 * 180.80498 * 11 10 9 34 34 H 1.09001 * 109.45897 * 60.83904 * 11 10 9 35 35 H 1.07993 * 120.28172 * 359.96834 * 14 13 12 36 36 H 1.08001 * 118.53980 * 180.25568 * 17 16 15 37 37 H 0.96705 * 113.99932 * 270.01743 * 20 19 18 38 38 H 1.08002 * 120.13082 * 0.02562 * 22 21 19 39 39 H 1.08992 * 109.46477 * 58.27724 * 27 12 11 40 40 H 1.09005 * 109.46135 * 178.24707 * 27 12 11 41 41 H 1.09000 * 109.50054 * 299.24002 * 28 27 12 42 42 H 1.08995 * 109.50245 * 179.12139 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6638 0.0005 11 6 1.4755 -4.9851 0.0621 12 7 0.6546 -5.0186 1.2792 13 6 0.0419 -6.2601 1.4342 14 6 -0.8198 -6.7228 0.4592 15 6 -1.4330 -7.9697 0.6194 16 7 -2.2778 -8.4672 -0.2968 17 6 -2.8247 -9.6469 -0.1238 18 7 -2.5965 -10.3961 0.9436 19 6 -1.7829 -9.9968 1.9098 20 8 -1.5603 -10.7736 2.9948 21 6 -1.1540 -8.7389 1.7775 22 6 -0.2790 -8.2411 2.7520 23 6 0.3068 -7.0251 2.5758 24 7 1.2351 -6.5051 3.6048 25 8 1.4703 -7.1641 4.6018 26 8 1.7632 -5.4177 3.4550 27 6 -0.3392 -3.9375 1.2794 28 6 0.3764 -2.5849 1.2543 29 1 -0.4851 0.8400 -0.0004 30 1 0.6220 -2.5576 -0.8876 31 1 2.9000 -3.5833 0.8683 32 1 2.8423 -3.6326 -0.9108 33 1 2.1808 -5.8159 0.0767 34 1 0.8312 -5.0711 -0.8129 35 1 -1.0190 -6.1266 -0.4190 36 1 -3.4970 -10.0202 -0.8821 37 1 -2.1755 -10.6162 3.7242 38 1 -0.0664 -8.8220 3.6373 39 1 -0.9749 -4.0285 0.3988 40 1 -0.9518 -4.0075 2.1783 41 1 1.0018 -2.4876 2.1417 42 1 -0.3616 -1.7830 1.2387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541933328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:00 Heat of formation + Delta-G solvation = 27.561395 kcal Electronic energy + Delta-G solvation = -30298.057141 eV Core-core repulsion = 26053.769464 eV Total energy + Delta-G solvation = -4244.287677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.39661 -42.62416 -40.88564 -39.03012 -38.48859 -37.44470 -35.81496 -34.69499 -33.60588 -32.32078 -31.65250 -31.04717 -28.00201 -27.81826 -25.58394 -24.86149 -24.13298 -23.87727 -23.24886 -21.16801 -20.50597 -20.23835 -19.79423 -19.37658 -18.48234 -18.43208 -18.04014 -17.68180 -16.92263 -16.68344 -16.45599 -16.01953 -15.80168 -15.66769 -15.26935 -14.95267 -14.54081 -14.37435 -14.26665 -13.99748 -13.55286 -13.39814 -13.19898 -12.84125 -12.71960 -12.54634 -12.41642 -12.30905 -12.28021 -12.10341 -12.04854 -11.96322 -11.94644 -11.39512 -10.91491 -10.78259 -10.69387 -10.63144 -10.36023 -9.97559 -9.58350 -8.05839 -6.17256 -1.65649 -1.17030 -0.23318 0.30506 0.36818 1.29876 1.43958 1.45417 1.52339 1.93768 2.34584 2.46756 2.49331 2.74161 2.80849 2.98376 3.22057 3.28751 3.38231 3.83982 3.95499 3.97792 4.11978 4.16781 4.17025 4.26296 4.37852 4.42740 4.61366 4.73125 4.76963 4.88633 4.93799 5.02923 5.18782 5.28401 5.30499 5.53123 5.54934 5.64827 5.81085 5.98197 6.13343 6.17786 6.30648 6.43833 6.63603 6.72444 6.92646 7.50063 8.98752 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.003008 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.013590 B = 9305.809587 C =10344.782284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.050 0.950 9 C 0.048 3.952 10 C -0.097 4.097 11 C 0.074 3.926 12 N -0.503 5.503 13 C 0.182 3.818 14 C -0.136 4.136 15 C 0.213 3.787 16 N -0.538 5.538 17 C 0.357 3.643 18 N -0.558 5.558 19 C 0.454 3.546 20 O -0.464 6.464 21 C -0.203 4.203 22 C 0.044 3.956 23 C -0.046 4.046 24 N 0.029 4.971 25 O -0.178 6.178 26 O -0.141 6.141 27 C 0.081 3.919 28 C -0.092 4.092 29 H 0.260 0.740 30 H -0.002 1.002 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.158 0.842 36 H 0.245 0.755 37 H 0.444 0.556 38 H 0.197 0.803 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.798 -23.439 3.817 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.068 0.932 9 C 0.029 3.971 10 C -0.135 4.135 11 C -0.051 4.051 12 N -0.225 5.225 13 C 0.083 3.917 14 C -0.157 4.157 15 C 0.085 3.915 16 N -0.254 5.254 17 C 0.071 3.929 18 N -0.284 5.284 19 C 0.253 3.747 20 O -0.278 6.278 21 C -0.211 4.211 22 C 0.023 3.977 23 C -0.131 4.131 24 N 0.547 4.453 25 O -0.389 6.389 26 O -0.360 6.360 27 C -0.045 4.045 28 C -0.130 4.130 29 H 0.069 0.931 30 H 0.016 0.984 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.176 0.824 36 H 0.261 0.739 37 H 0.311 0.689 38 H 0.214 0.786 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.235 -23.950 2.713 25.471 hybrid contribution 0.430 1.825 0.484 1.936 sum -7.804 -22.126 3.197 23.678 Atomic orbital electron populations 1.69970 1.06944 1.27044 1.51614 1.25658 0.95654 1.02060 0.94944 0.85758 0.78502 0.79576 0.78684 1.19773 1.21055 1.19989 1.21523 0.93008 0.92178 1.50154 0.93173 1.18630 0.93028 0.92360 0.93042 1.21529 0.98108 0.93100 1.00743 1.22169 0.95658 0.99228 0.88080 1.59687 1.23055 0.99227 1.40534 1.18662 0.91171 0.91279 0.90604 1.21561 0.97659 0.95564 1.00957 1.18953 0.90840 0.93074 0.88653 1.69055 1.11135 1.15996 1.29212 1.25788 0.91457 0.83969 0.91725 1.68247 1.18744 1.37035 1.04397 1.19537 0.84379 0.82754 0.88029 1.84594 1.58472 1.60433 1.24272 1.19430 1.05394 0.97736 0.98496 1.20962 0.87573 0.90525 0.98688 1.20981 1.01872 0.98161 0.92104 1.43599 1.00207 1.00573 1.00890 1.94448 1.66938 1.58151 1.19346 1.94763 1.50727 1.06970 1.83582 1.22135 0.91936 0.90714 0.99675 1.21413 0.99361 0.93539 0.98692 0.93124 0.98427 0.92838 0.92031 0.90407 0.93729 0.82396 0.73949 0.68872 0.78630 0.94383 0.91789 0.94782 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.25 11.37 21.45 0.24 -52.00 16 2 C 0.02 0.85 5.31 84.65 0.45 1.30 16 3 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.53 -29.19 8.56 25.60 0.22 -28.97 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 9 C 0.05 2.35 2.16 -11.46 -0.02 2.33 16 10 C -0.10 -3.96 5.32 30.65 0.16 -3.80 16 11 C 0.07 2.48 5.10 86.33 0.44 2.92 16 12 N -0.50 -17.12 2.41 -695.53 -1.68 -18.80 16 13 C 0.18 5.12 4.67 38.34 0.18 5.30 16 14 C -0.14 -3.34 8.63 22.63 0.20 -3.14 16 15 C 0.21 4.51 6.61 40.06 0.26 4.77 16 16 N -0.54 -10.44 10.45 -193.95 -2.03 -12.47 16 17 C 0.36 4.88 12.22 180.89 2.21 7.09 16 18 N -0.56 -8.11 10.42 -312.06 -3.25 -11.36 16 19 C 0.45 6.14 7.89 85.34 0.67 6.82 16 20 O -0.46 -3.61 12.91 -85.75 -1.11 -4.72 16 21 C -0.20 -3.51 5.75 -21.20 -0.12 -3.63 16 22 C 0.04 0.79 9.08 22.23 0.20 0.99 16 23 C -0.05 -1.20 6.83 36.30 0.25 -0.95 16 24 N 0.03 0.90 4.45 -46.64 -0.21 0.69 16 25 O -0.18 -5.25 18.38 18.89 0.35 -4.90 16 26 O -0.14 -5.35 17.03 18.87 0.32 -5.03 16 27 C 0.08 3.02 5.16 86.33 0.45 3.47 16 28 C -0.09 -4.32 5.12 30.65 0.16 -4.16 16 29 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.08 2.35 8.10 -2.39 -0.02 2.33 16 34 H 0.04 1.42 7.29 -2.39 -0.02 1.40 16 35 H 0.16 3.97 7.05 -2.91 -0.02 3.95 16 36 H 0.24 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.44 -1.41 9.06 -74.05 -0.67 -2.08 16 38 H 0.20 2.38 7.19 -2.91 -0.02 2.36 16 39 H 0.04 1.39 7.51 -2.39 -0.02 1.37 16 40 H 0.06 2.29 8.11 -2.38 -0.02 2.27 16 41 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 3.58 6.17 -2.39 -0.01 3.56 16 Total: -1.00 -70.00 353.87 0.79 -69.21 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 0.43 Total: 3.13 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 5.70 Total: -9.67 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -6.92 Total: -93.93 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.44 Total: -14.65 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -70.00 0.79 -69.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541933328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.771 kcal (2) G-P(sol) polarization free energy of solvation -70.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds