Wall clock time and date at job start Wed Apr 1 2020 03:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99619 * 2 1 4 4 H 1.48494 * 109.47015 * 264.78039 * 3 2 1 5 5 H 1.48504 * 109.47011 * 24.77664 * 3 2 1 6 6 H 1.48497 * 109.46973 * 144.77617 * 3 2 1 7 7 C 1.37873 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99899 * 5.94380 * 7 2 1 9 9 C 1.50693 * 120.00157 * 185.94207 * 7 2 1 10 10 C 1.53119 * 109.52652 * 215.14155 * 9 7 2 11 11 C 1.53036 * 109.28307 * 182.43995 * 10 9 7 12 12 N 1.46850 * 109.52151 * 59.17345 * 11 10 9 13 13 C 1.38301 * 110.99949 * 174.15993 * 12 11 10 14 14 N 1.33089 * 118.63497 * 0.02562 * 13 12 11 15 15 C 1.32245 * 121.46353 * 179.97438 * 14 13 12 16 16 O 1.35269 * 120.82748 * 180.02562 * 15 14 13 17 17 C 1.41534 * 118.34819 * 359.97438 * 15 14 13 18 18 C 1.39983 * 122.02104 * 180.02562 * 17 15 14 19 19 C 1.36375 * 119.52077 * 179.97438 * 18 17 15 20 20 N 1.48021 * 119.54681 * 180.02562 * 19 18 17 21 21 O 1.21796 * 120.00243 * 180.02562 * 20 19 18 22 22 O 1.21801 * 120.00302 * 0.02562 * 20 19 18 23 23 C 1.39215 * 120.90476 * 0.04873 * 19 18 17 24 24 C 1.36309 * 121.02203 * 359.95828 * 23 19 18 25 25 C 1.40181 * 119.59361 * 0.02562 * 24 23 19 26 26 N 1.31897 * 118.64096 * 179.73237 * 13 12 11 27 27 C 1.46842 * 111.20128 * 298.26227 * 12 11 10 28 28 C 1.53040 * 109.52464 * 61.73839 * 27 12 11 29 29 H 0.97001 * 120.00576 * 0.02562 * 1 2 3 30 30 H 1.09011 * 109.57550 * 335.29538 * 9 7 2 31 31 H 1.09000 * 109.50402 * 62.49107 * 10 9 7 32 32 H 1.09007 * 109.53070 * 302.40157 * 10 9 7 33 33 H 1.09001 * 109.46069 * 179.19017 * 11 10 9 34 34 H 1.08994 * 109.46015 * 299.15883 * 11 10 9 35 35 H 0.96701 * 114.00563 * 89.99421 * 16 15 14 36 36 H 1.08001 * 120.23957 * 359.96887 * 18 17 15 37 37 H 1.07993 * 119.48997 * 179.97438 * 23 19 18 38 38 H 1.07998 * 120.20379 * 179.97438 * 24 23 19 39 39 H 1.09004 * 109.46321 * 301.72698 * 27 12 11 40 40 H 1.09000 * 109.46375 * 181.75962 * 27 12 11 41 41 H 1.09001 * 109.50202 * 180.88337 * 28 27 12 42 42 H 1.09000 * 109.49866 * 60.76797 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.6069 1.9828 -1.3942 5 1 1.3956 2.6821 0.5868 6 1 3.4871 1.4747 0.8075 7 6 2.0046 -1.1940 0.0005 8 1 1.4690 -2.1268 -0.0959 9 6 3.5055 -1.1974 0.1356 10 6 4.0924 -2.3344 -0.7053 11 6 5.6106 -2.3711 -0.5162 12 7 5.9235 -2.5764 0.9038 13 6 7.2833 -2.7447 1.0924 14 7 8.0846 -2.7014 0.0306 15 6 9.3930 -2.8548 0.1466 16 8 10.1956 -2.8080 -0.9412 17 6 9.9328 -3.0682 1.4375 18 6 11.3059 -3.2395 1.6488 19 6 11.7709 -3.4415 2.9148 20 7 13.2229 -3.6221 3.1389 21 8 13.6472 -3.8035 4.2661 22 8 13.9934 -3.5895 2.1962 23 6 10.8988 -3.4805 3.9992 24 6 9.5564 -3.3173 3.8273 25 6 9.0439 -3.1074 2.5395 26 7 7.7327 -2.9355 2.3176 27 6 5.4108 -1.4727 1.7255 28 6 3.8866 -1.4092 1.6033 29 1 -0.4851 0.8400 -0.0004 30 1 3.9055 -0.2443 -0.2107 31 1 3.8605 -2.1664 -1.7570 32 1 3.6628 -3.2837 -0.3851 33 1 6.0300 -3.1887 -1.1025 34 1 6.0410 -1.4270 -0.8501 35 1 10.5218 -1.9223 -1.1516 36 1 11.9921 -3.2121 0.8152 37 1 11.2918 -3.6422 4.9919 38 1 8.8918 -3.3504 4.6778 39 1 5.8422 -0.5327 1.3811 40 1 5.6852 -1.6378 2.7674 41 1 3.5079 -0.5801 2.2010 42 1 3.4538 -2.3437 1.9605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000561265871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:38 Heat of formation + Delta-G solvation = 45.479528 kcal Electronic energy + Delta-G solvation = -29323.863758 eV Core-core repulsion = 25080.353069 eV Total energy + Delta-G solvation = -4243.510688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.65492 -42.01847 -39.58539 -38.72423 -37.43567 -36.89952 -34.22936 -33.89945 -32.21044 -31.86845 -30.81079 -30.40322 -27.28855 -25.91229 -25.44322 -23.64386 -23.20250 -22.44728 -21.95784 -20.26518 -19.68472 -19.29760 -19.01077 -18.64103 -17.87617 -17.35205 -17.07276 -16.91729 -16.32358 -16.01637 -15.08992 -15.00770 -14.58498 -14.43736 -14.25262 -13.92684 -13.34907 -13.10027 -12.96798 -12.78779 -12.57465 -12.48472 -12.03320 -11.90183 -11.84720 -11.70988 -11.53892 -11.46659 -11.33196 -11.08309 -10.85952 -10.64844 -10.34685 -10.05284 -9.82585 -9.73652 -9.54014 -9.37881 -9.11778 -8.60735 -8.46690 -6.16768 -4.16223 -0.88513 -0.26940 0.50209 0.99937 1.10154 2.07810 2.49724 2.96556 3.18641 3.26657 3.28529 3.28677 3.56481 3.68347 3.89296 4.01681 4.24312 4.31819 4.52248 4.61296 4.91553 4.96485 5.07674 5.17590 5.19990 5.35401 5.45835 5.47053 5.60550 5.65356 5.88253 5.91753 5.99262 6.15785 6.16987 6.22031 6.47785 6.54695 6.65125 6.75567 6.84131 6.97615 7.20676 7.28955 7.32725 7.65841 7.67372 8.43209 8.89351 9.45975 10.96536 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.024639 B = 0.002367 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.158908 B =11825.464161 C =12228.271833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.011 3.989 10 C -0.106 4.106 11 C 0.064 3.936 12 N -0.442 5.442 13 C 0.553 3.447 14 N -0.562 5.562 15 C 0.458 3.542 16 O -0.465 6.465 17 C -0.230 4.230 18 C 0.038 3.962 19 C -0.072 4.072 20 N 0.033 4.967 21 O -0.158 6.158 22 O -0.166 6.166 23 C -0.035 4.035 24 C -0.099 4.099 25 C 0.243 3.757 26 N -0.536 5.536 27 C 0.064 3.936 28 C -0.110 4.110 29 H 0.264 0.736 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.419 0.581 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.342 -4.000 4.186 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.008 4.008 10 C -0.144 4.144 11 C -0.062 4.062 12 N -0.159 5.159 13 C 0.199 3.801 14 N -0.292 5.292 15 C 0.254 3.746 16 O -0.274 6.274 17 C -0.239 4.239 18 C 0.016 3.984 19 C -0.156 4.156 20 N 0.551 4.449 21 O -0.375 6.375 22 O -0.380 6.380 23 C -0.057 4.057 24 C -0.119 4.119 25 C 0.110 3.890 26 N -0.259 5.259 27 C -0.060 4.060 28 C -0.149 4.149 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.281 0.719 36 H 0.183 0.817 37 H 0.179 0.821 38 H 0.182 0.818 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.962 -4.629 4.082 21.851 hybrid contribution 2.050 1.638 -0.252 2.636 sum 23.012 -2.992 3.830 23.520 Atomic orbital electron populations 1.69905 1.06301 1.27021 1.50322 1.25085 0.94676 0.98923 0.94419 0.86877 0.80070 0.83907 0.78699 1.20234 1.21575 1.19222 1.20934 0.88956 0.94647 1.50290 0.90749 1.19244 0.97164 0.93873 0.90522 1.21774 0.90114 1.01276 1.01209 1.22371 0.99226 1.01457 0.83121 1.58360 1.03457 1.41485 1.12552 1.21205 0.90195 0.85710 0.83014 1.68013 1.04728 1.20968 1.35489 1.19378 0.86431 0.84652 0.84163 1.84634 1.63217 1.35535 1.44004 1.19261 0.94606 1.14770 0.95278 1.20741 0.94659 0.86851 0.96124 1.20700 0.80681 1.17731 0.96508 1.43540 1.03227 0.97552 1.00545 1.94545 1.81305 1.52200 1.09406 1.94550 1.53638 1.54768 1.35033 1.20686 0.92139 0.93835 0.99022 1.20668 0.94022 1.01316 0.95918 1.18961 0.88103 0.88759 0.93154 1.68668 1.12953 1.22197 1.22048 1.22543 0.99192 0.87763 0.96537 1.22027 0.89152 1.02486 1.01219 0.92587 0.95236 0.91054 0.91626 0.90084 0.93004 0.71879 0.81704 0.82111 0.81823 0.93939 0.89428 0.91409 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.96 55.43 0.77 -25.56 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 20.34 27.02 -169.99 -4.59 15.75 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -5.83 6.78 56.52 0.38 -5.44 16 7 C -0.51 -13.33 8.86 -34.45 -0.31 -13.63 16 8 H 0.07 2.14 8.06 -52.49 -0.42 1.71 16 9 C 0.01 0.23 1.85 -91.66 -0.17 0.06 16 10 C -0.11 -1.93 5.36 -26.65 -0.14 -2.07 16 11 C 0.06 1.01 4.61 -3.83 -0.02 0.99 16 12 N -0.44 -7.02 4.71 -175.46 -0.83 -7.84 16 13 C 0.55 8.01 7.17 -322.95 -2.32 5.69 16 14 N -0.56 -7.35 8.58 -13.62 -0.12 -7.47 16 15 C 0.46 4.64 7.89 -16.12 -0.13 4.52 16 16 O -0.47 -3.29 12.92 -17.50 -0.23 -3.52 16 17 C -0.23 -2.22 5.75 -106.69 -0.61 -2.84 16 18 C 0.04 0.31 9.09 -39.60 -0.36 -0.05 16 19 C -0.07 -0.64 6.81 -80.25 -0.55 -1.18 16 20 N 0.03 0.35 4.45 33.81 0.15 0.50 16 21 O -0.16 -1.78 18.40 -29.46 -0.54 -2.32 16 22 O -0.17 -1.87 18.38 -29.46 -0.54 -2.41 16 23 C -0.03 -0.26 9.46 -39.91 -0.38 -0.64 16 24 C -0.10 -0.81 10.01 -39.55 -0.40 -1.21 16 25 C 0.24 2.65 6.61 -84.86 -0.56 2.09 16 26 N -0.54 -7.23 9.60 -12.01 -0.12 -7.34 16 27 C 0.06 1.03 5.32 -3.84 -0.02 1.01 16 28 C -0.11 -2.10 5.36 -26.65 -0.14 -2.24 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.03 0.64 5.24 -51.92 -0.27 0.37 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 33 H 0.08 1.21 7.66 -51.93 -0.40 0.81 16 34 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.42 0.73 9.06 45.56 0.41 1.14 16 36 H 0.17 1.03 7.21 -52.49 -0.38 0.65 16 37 H 0.16 0.88 7.56 -52.49 -0.40 0.48 16 38 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.30 7.52 -51.93 -0.39 0.91 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -31.66 356.13 -10.82 -42.48 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -3.96 Total: 0.05 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -6.19 Total: -7.68 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.13 Total: -47.71 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -1.31 Total: -8.25 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.59 Total: 15.75 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.66 -10.82 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561265871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.961 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds