Wall clock time and date at job start Wed Apr 1 2020 03:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99619 * 2 1 4 4 H 1.48494 * 109.47015 * 264.78039 * 3 2 1 5 5 H 1.48504 * 109.47011 * 24.77664 * 3 2 1 6 6 H 1.48497 * 109.46973 * 144.77617 * 3 2 1 7 7 C 1.37873 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99899 * 5.94380 * 7 2 1 9 9 C 1.50693 * 120.00157 * 185.94207 * 7 2 1 10 10 C 1.53119 * 109.52652 * 215.14155 * 9 7 2 11 11 C 1.53036 * 109.28307 * 182.43995 * 10 9 7 12 12 N 1.46850 * 109.52151 * 59.17345 * 11 10 9 13 13 C 1.38301 * 110.99949 * 174.15993 * 12 11 10 14 14 N 1.33089 * 118.63497 * 0.02562 * 13 12 11 15 15 C 1.32245 * 121.46353 * 179.97438 * 14 13 12 16 16 O 1.35269 * 120.82748 * 180.02562 * 15 14 13 17 17 C 1.41534 * 118.34819 * 359.97438 * 15 14 13 18 18 C 1.39983 * 122.02104 * 180.02562 * 17 15 14 19 19 C 1.36375 * 119.52077 * 179.97438 * 18 17 15 20 20 N 1.48021 * 119.54681 * 180.02562 * 19 18 17 21 21 O 1.21796 * 120.00243 * 180.02562 * 20 19 18 22 22 O 1.21801 * 120.00302 * 0.02562 * 20 19 18 23 23 C 1.39215 * 120.90476 * 0.04873 * 19 18 17 24 24 C 1.36309 * 121.02203 * 359.95828 * 23 19 18 25 25 C 1.40181 * 119.59361 * 0.02562 * 24 23 19 26 26 N 1.31897 * 118.64096 * 179.73237 * 13 12 11 27 27 C 1.46842 * 111.20128 * 298.26227 * 12 11 10 28 28 C 1.53040 * 109.52464 * 61.73839 * 27 12 11 29 29 H 0.97001 * 120.00576 * 0.02562 * 1 2 3 30 30 H 1.09011 * 109.57550 * 335.29538 * 9 7 2 31 31 H 1.09000 * 109.50402 * 62.49107 * 10 9 7 32 32 H 1.09007 * 109.53070 * 302.40157 * 10 9 7 33 33 H 1.09001 * 109.46069 * 179.19017 * 11 10 9 34 34 H 1.08994 * 109.46015 * 299.15883 * 11 10 9 35 35 H 0.96701 * 114.00563 * 89.99421 * 16 15 14 36 36 H 1.08001 * 120.23957 * 359.96887 * 18 17 15 37 37 H 1.07993 * 119.48997 * 179.97438 * 23 19 18 38 38 H 1.07998 * 120.20379 * 179.97438 * 24 23 19 39 39 H 1.09004 * 109.46321 * 301.72698 * 27 12 11 40 40 H 1.09000 * 109.46375 * 181.75962 * 27 12 11 41 41 H 1.09001 * 109.50202 * 180.88337 * 28 27 12 42 42 H 1.09000 * 109.49866 * 60.76797 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.6069 1.9828 -1.3942 5 1 1.3956 2.6821 0.5868 6 1 3.4871 1.4747 0.8075 7 6 2.0046 -1.1940 0.0005 8 1 1.4690 -2.1268 -0.0959 9 6 3.5055 -1.1974 0.1356 10 6 4.0924 -2.3344 -0.7053 11 6 5.6106 -2.3711 -0.5162 12 7 5.9235 -2.5764 0.9038 13 6 7.2833 -2.7447 1.0924 14 7 8.0846 -2.7014 0.0306 15 6 9.3930 -2.8548 0.1466 16 8 10.1956 -2.8080 -0.9412 17 6 9.9328 -3.0682 1.4375 18 6 11.3059 -3.2395 1.6488 19 6 11.7709 -3.4415 2.9148 20 7 13.2229 -3.6221 3.1389 21 8 13.6472 -3.8035 4.2661 22 8 13.9934 -3.5895 2.1962 23 6 10.8988 -3.4805 3.9992 24 6 9.5564 -3.3173 3.8273 25 6 9.0439 -3.1074 2.5395 26 7 7.7327 -2.9355 2.3176 27 6 5.4108 -1.4727 1.7255 28 6 3.8866 -1.4092 1.6033 29 1 -0.4851 0.8400 -0.0004 30 1 3.9055 -0.2443 -0.2107 31 1 3.8605 -2.1664 -1.7570 32 1 3.6628 -3.2837 -0.3851 33 1 6.0300 -3.1887 -1.1025 34 1 6.0410 -1.4270 -0.8501 35 1 10.5218 -1.9223 -1.1516 36 1 11.9921 -3.2121 0.8152 37 1 11.2918 -3.6422 4.9919 38 1 8.8918 -3.3504 4.6778 39 1 5.8422 -0.5327 1.3811 40 1 5.6852 -1.6378 2.7674 41 1 3.5079 -0.5801 2.2010 42 1 3.4538 -2.3437 1.9605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561265871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:37 Heat of formation + Delta-G solvation = 24.566523 kcal Electronic energy + Delta-G solvation = -29324.770614 eV Core-core repulsion = 25080.353069 eV Total energy + Delta-G solvation = -4244.417544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.43822 -42.85522 -40.65120 -39.37781 -38.45232 -37.71301 -35.68790 -34.76413 -33.78734 -32.77691 -31.93302 -31.60565 -28.59189 -27.12446 -26.22826 -24.77267 -24.17165 -23.50223 -23.29101 -21.12723 -20.76075 -20.26155 -19.95848 -19.53221 -18.96097 -18.65290 -18.16931 -17.88677 -17.23020 -16.77164 -16.37605 -16.04619 -15.69414 -15.43316 -15.13988 -14.96830 -14.93333 -14.59019 -14.25055 -13.82802 -13.64394 -13.50159 -13.29561 -13.13246 -12.84482 -12.74068 -12.64299 -12.47763 -12.32911 -12.30872 -12.17688 -12.04220 -11.80878 -11.50508 -11.20033 -11.04716 -10.95061 -10.68478 -10.58585 -10.36479 -9.44819 -8.26812 -6.30370 -1.65594 -0.99628 -0.32899 0.24523 0.38148 1.30258 1.36315 1.36483 1.47392 1.71621 2.07701 2.35976 2.47364 2.80231 2.99506 3.07875 3.13165 3.32387 3.44081 3.78325 3.92557 3.97115 4.05258 4.09374 4.29267 4.31585 4.36556 4.48246 4.55074 4.58218 4.67513 4.71744 4.86898 4.91084 4.95123 5.04234 5.19645 5.22772 5.40139 5.46991 5.56225 5.68013 5.75855 5.94120 6.25524 6.35158 6.43708 6.75917 6.77324 7.35187 8.90274 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.024639 B = 0.002367 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.158908 B =11825.464161 C =12228.271833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.009 3.991 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.241 1.241 7 C -0.510 4.510 8 H 0.029 0.971 9 C 0.009 3.991 10 C -0.100 4.100 11 C 0.080 3.920 12 N -0.460 5.460 13 C 0.543 3.457 14 N -0.585 5.585 15 C 0.470 3.530 16 O -0.462 6.462 17 C -0.228 4.228 18 C 0.050 3.950 19 C -0.075 4.075 20 N 0.034 4.966 21 O -0.169 6.169 22 O -0.177 6.177 23 C -0.021 4.021 24 C -0.097 4.097 25 C 0.226 3.774 26 N -0.552 5.552 27 C 0.078 3.922 28 C -0.105 4.105 29 H 0.264 0.736 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.443 0.557 36 H 0.185 0.815 37 H 0.183 0.817 38 H 0.181 0.819 39 H 0.048 0.952 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.133 -3.387 4.668 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.187 4.187 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.164 1.164 7 C -0.548 4.548 8 H 0.048 0.952 9 C -0.010 4.010 10 C -0.139 4.139 11 C -0.046 4.046 12 N -0.177 5.177 13 C 0.188 3.812 14 N -0.316 5.316 15 C 0.267 3.733 16 O -0.275 6.275 17 C -0.237 4.237 18 C 0.028 3.972 19 C -0.159 4.159 20 N 0.550 4.450 21 O -0.384 6.384 22 O -0.390 6.390 23 C -0.043 4.043 24 C -0.116 4.116 25 C 0.095 3.905 26 N -0.275 5.275 27 C -0.047 4.047 28 C -0.143 4.143 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.310 0.690 36 H 0.203 0.797 37 H 0.201 0.799 38 H 0.199 0.801 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.079 0.921 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 24.857 -4.026 4.566 25.592 hybrid contribution 0.996 1.313 -0.395 1.695 sum 25.854 -2.714 4.171 26.328 Atomic orbital electron populations 1.70073 1.08377 1.27982 1.52746 1.25979 0.95401 1.03051 0.94314 0.85815 0.79474 0.78650 0.79433 1.19303 1.21888 1.16425 1.21222 0.91725 0.92864 1.49019 0.95216 1.19231 0.93803 0.95223 0.92701 1.21618 0.92399 0.99334 1.00507 1.22114 0.96521 1.02138 0.83802 1.58273 1.05280 1.42075 1.12091 1.20974 0.89659 0.86767 0.83825 1.67961 1.05860 1.22623 1.35144 1.19450 0.85885 0.83006 0.84938 1.84607 1.62416 1.37586 1.42848 1.19276 0.94960 1.14518 0.94901 1.20867 0.94182 0.85551 0.96569 1.20855 0.79752 1.17987 0.97308 1.43743 1.03810 0.97180 1.00312 1.94545 1.81752 1.52582 1.09548 1.94548 1.54303 1.55147 1.35012 1.20920 0.91560 0.92156 0.99703 1.20839 0.94408 1.00891 0.95485 1.19321 0.87531 0.89135 0.94539 1.68607 1.14383 1.22710 1.21807 1.22299 0.96347 0.88526 0.97539 1.21798 0.91912 1.01531 0.99089 0.92674 0.94822 0.91119 0.92983 0.89205 0.92391 0.69010 0.79740 0.79941 0.80132 0.93330 0.88211 0.92052 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.09 13.96 21.45 0.30 -57.79 16 2 C 0.01 0.52 5.47 84.65 0.46 0.98 16 3 Si 0.94 41.92 27.02 68.60 1.85 43.77 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.24 -9.60 6.78 99.48 0.67 -8.93 16 7 C -0.51 -27.67 8.86 25.60 0.23 -27.44 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C 0.01 0.40 1.85 -11.46 -0.02 0.38 16 10 C -0.10 -3.69 5.36 30.65 0.16 -3.53 16 11 C 0.08 2.43 4.61 86.32 0.40 2.83 16 12 N -0.46 -14.01 4.71 -709.04 -3.34 -17.35 16 13 C 0.54 14.74 7.17 261.54 1.88 16.61 16 14 N -0.59 -13.97 8.58 -310.09 -2.66 -16.63 16 15 C 0.47 8.18 7.89 85.44 0.67 8.85 16 16 O -0.46 -4.94 12.92 -85.54 -1.11 -6.05 16 17 C -0.23 -3.72 5.75 -21.20 -0.12 -3.84 16 18 C 0.05 0.63 9.09 22.26 0.20 0.84 16 19 C -0.08 -1.08 6.81 36.17 0.25 -0.84 16 20 N 0.03 0.62 4.45 -46.94 -0.21 0.41 16 21 O -0.17 -3.42 18.40 18.89 0.35 -3.07 16 22 O -0.18 -3.58 18.38 18.89 0.35 -3.24 16 23 C -0.02 -0.25 9.46 22.05 0.21 -0.04 16 24 C -0.10 -1.28 10.01 22.29 0.22 -1.06 16 25 C 0.23 4.33 6.61 40.11 0.27 4.60 16 26 N -0.55 -13.79 9.60 -191.89 -1.84 -15.63 16 27 C 0.08 2.37 5.32 86.33 0.46 2.83 16 28 C -0.10 -3.96 5.36 30.65 0.16 -3.80 16 29 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.03 1.41 5.24 -2.38 -0.01 1.39 16 31 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.09 2.56 7.66 -2.39 -0.02 2.54 16 34 H 0.06 1.67 8.09 -2.39 -0.02 1.66 16 35 H 0.44 -0.15 9.06 -74.06 -0.67 -0.82 16 36 H 0.19 1.59 7.21 -2.91 -0.02 1.57 16 37 H 0.18 1.32 7.56 -2.91 -0.02 1.30 16 38 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.10 2.80 7.52 -2.39 -0.02 2.78 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -70.95 356.13 -0.49 -71.43 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.39 Total: 6.76 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 5.43 Total: -2.63 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -7.75 Total: -106.99 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.41 Total: -12.35 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.85 Total: 43.77 kcal Total: -70.95 -0.49 -71.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561265871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.001 kcal (2) G-P(sol) polarization free energy of solvation -70.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds