Wall clock time and date at job start Wed Apr 1 2020 03:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00034 * 2 1 4 4 H 1.48493 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47051 * 300.00055 * 3 2 1 6 6 H 1.48500 * 109.47022 * 59.99619 * 3 2 1 7 7 C 1.37878 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00289 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.63997 * 298.31387 * 9 7 2 11 11 C 1.55147 * 110.87415 * 175.06141 * 9 7 2 12 12 C 1.54908 * 101.58511 * 206.06304 * 11 9 7 13 13 N 1.47754 * 104.84128 * 37.09472 * 12 11 9 14 14 C 1.34767 * 125.82606 * 155.82940 * 13 12 11 15 15 O 1.21358 * 120.00433 * 179.91177 * 14 13 12 16 16 C 1.49343 * 119.99940 * 359.91157 * 14 13 12 17 17 O 1.21384 * 119.99896 * 359.97438 * 16 14 13 18 18 N 1.34780 * 119.99732 * 180.02562 * 16 14 13 19 19 C 1.39897 * 119.99749 * 174.72259 * 18 16 14 20 20 C 1.39596 * 119.83985 * 146.57884 * 19 18 16 21 21 C 1.36450 * 120.74876 * 179.97438 * 20 19 18 22 22 C 1.39320 * 120.09739 * 0.02562 * 21 20 19 23 23 N 1.37183 * 133.66618 * 180.02562 * 22 21 20 24 24 H 0.97000 * 125.45835 * 359.96567 * 23 22 21 25 25 N 1.39852 * 109.07153 * 179.97438 * 23 22 21 26 26 C 1.30241 * 110.09519 * 0.02562 * 25 23 22 27 27 C 1.40799 * 119.63919 * 0.02562 * 22 21 20 28 28 C 1.38109 * 119.83660 * 326.30722 * 19 18 16 29 29 C 1.47021 * 108.52433 * 335.75384 * 13 12 11 30 30 H 0.96996 * 120.00008 * 0.02562 * 1 2 3 31 31 H 0.96703 * 113.99864 * 61.68601 * 10 9 7 32 32 H 1.08999 * 111.00895 * 324.13534 * 11 9 7 33 33 H 1.09006 * 111.00525 * 87.95547 * 11 9 7 34 34 H 1.08992 * 110.37306 * 155.84497 * 12 11 9 35 35 H 1.09001 * 110.37220 * 278.06772 * 12 11 9 36 36 H 0.96991 * 120.00149 * 354.71805 * 18 16 14 37 37 H 1.07999 * 119.62660 * 359.95810 * 20 19 18 38 38 H 1.07998 * 119.95445 * 180.02562 * 21 20 19 39 39 H 1.07999 * 126.10138 * 180.02562 * 26 25 23 40 40 H 1.08000 * 120.27153 * 0.02562 * 28 19 18 41 41 H 1.09000 * 109.87961 * 241.68251 * 29 13 12 42 42 H 1.09009 * 109.88260 * 120.67480 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.4495 -2.6180 1.1776 11 6 2.2256 -3.7000 -0.1236 12 6 1.3156 -4.7734 -0.7712 13 7 0.4615 -4.0252 -1.7165 14 6 -0.1445 -4.5362 -2.8064 15 8 -0.8269 -3.8226 -3.5120 16 6 0.0237 -5.9808 -3.1459 17 8 0.7066 -6.6945 -2.4405 18 7 -0.5819 -6.4917 -4.2363 19 6 -0.3367 -7.8154 -4.6168 20 6 -1.3516 -8.5662 -5.2125 21 6 -1.1326 -9.8587 -5.5913 22 6 0.1141 -10.4454 -5.3854 23 7 0.6312 -11.6884 -5.6493 24 1 0.1500 -12.4217 -6.0636 25 7 1.9631 -11.7287 -5.2250 26 6 2.3041 -10.5814 -4.7115 27 6 1.1448 -9.6978 -4.7844 28 6 0.9100 -8.3711 -4.4064 29 6 0.3812 -2.6274 -1.2677 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2287 -1.9339 1.2623 32 1 3.0656 -3.4560 -0.7740 33 1 2.5746 -4.0230 0.8572 34 1 1.9172 -5.5084 -1.3059 35 1 0.7066 -5.2632 -0.0113 36 1 -1.1877 -5.9417 -4.7570 37 1 -2.3212 -8.1192 -5.3751 38 1 -1.9269 -10.4277 -6.0515 39 1 3.2722 -10.3287 -4.3049 40 1 1.6958 -7.7882 -3.9491 41 1 -0.6526 -2.3714 -1.0357 42 1 0.7610 -1.9657 -2.0463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592300994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:20 Heat of formation + Delta-G solvation = -36.028600 kcal Electronic energy + Delta-G solvation = -29286.970121 eV Core-core repulsion = 25039.924975 eV Total energy + Delta-G solvation = -4247.045146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.44089 -41.83445 -40.33610 -38.98646 -38.26386 -36.25984 -35.23738 -34.23209 -33.25258 -31.89573 -30.95963 -29.93302 -29.58891 -27.64168 -25.78481 -24.45563 -23.75318 -22.85767 -22.29791 -21.52113 -21.01764 -19.32549 -19.09164 -18.77669 -18.39420 -17.72623 -17.37249 -17.03189 -16.76229 -16.30287 -15.95732 -15.86846 -15.68891 -15.56896 -14.95041 -14.81343 -14.76889 -14.61705 -14.45875 -14.02296 -13.89614 -13.51922 -13.41965 -13.25980 -12.87977 -12.72444 -12.52415 -12.35008 -12.28315 -12.23105 -12.05761 -11.95614 -11.52260 -11.18737 -10.94033 -10.73388 -10.53780 -10.28970 -9.77649 -9.65834 -8.67521 -8.26421 -6.41620 -0.10510 -0.00217 0.60464 1.16860 1.42122 1.45921 1.49929 1.56088 1.78120 2.04050 2.36367 2.45198 2.74641 3.00248 3.18465 3.58944 3.71309 3.79962 3.82965 4.05026 4.14654 4.15227 4.24351 4.35253 4.40868 4.62084 4.69981 4.75464 4.89252 4.96881 5.06463 5.10730 5.11653 5.18155 5.27832 5.33082 5.41517 5.45881 5.73734 5.75880 5.97286 6.06716 6.34228 6.35667 6.58386 6.59566 6.67268 6.84417 7.27881 7.35824 8.80122 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.025304 B = 0.002268 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.293992 B =12341.453694 C =12829.888413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.027 3.973 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.068 0.932 9 C 0.233 3.767 10 O -0.587 6.587 11 C -0.115 4.115 12 C 0.108 3.892 13 N -0.582 5.582 14 C 0.507 3.493 15 O -0.557 6.557 16 C 0.520 3.480 17 O -0.507 6.507 18 N -0.629 5.629 19 C 0.086 3.914 20 C -0.077 4.077 21 C -0.114 4.114 22 C 0.111 3.889 23 N -0.505 5.505 24 H 0.452 0.548 25 N -0.271 5.271 26 C 0.078 3.922 27 C -0.184 4.184 28 C -0.053 4.053 29 C 0.118 3.882 30 H 0.271 0.729 31 H 0.376 0.624 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.430 0.570 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.221 0.779 40 H 0.130 0.870 41 H 0.045 0.955 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 -19.865 -11.979 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.174 4.174 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.086 0.914 9 C 0.193 3.807 10 O -0.395 6.395 11 C -0.153 4.153 12 C -0.013 4.013 13 N -0.314 5.314 14 C 0.290 3.710 15 O -0.437 6.437 16 C 0.301 3.699 17 O -0.382 6.382 18 N -0.276 5.276 19 C -0.008 4.008 20 C -0.099 4.099 21 C -0.137 4.137 22 C -0.006 4.006 23 N -0.222 5.222 24 H 0.299 0.701 25 N -0.085 5.085 26 C -0.120 4.120 27 C -0.192 4.192 28 C -0.076 4.076 29 C -0.005 4.005 30 H 0.080 0.920 31 H 0.226 0.774 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.088 0.912 36 H 0.270 0.730 37 H 0.183 0.817 38 H 0.184 0.816 39 H 0.238 0.762 40 H 0.148 0.852 41 H 0.063 0.937 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.823 -21.604 -12.079 24.765 hybrid contribution -0.964 2.548 -0.171 2.730 sum -1.787 -19.055 -12.250 22.723 Atomic orbital electron populations 1.69786 1.06983 1.28487 1.50073 1.25783 0.95826 1.02675 0.93078 0.85427 0.79132 0.79072 0.77537 1.19027 1.20816 1.20491 1.21820 0.93962 0.91093 1.52395 0.91424 1.19728 0.87024 0.93485 0.80482 1.86125 1.51718 1.56299 1.45359 1.22820 0.97114 0.93748 1.01579 1.22721 0.92521 0.94530 0.91545 1.48787 1.46419 1.12478 1.23748 1.19942 0.81167 0.88646 0.81279 1.90724 1.40628 1.61717 1.50616 1.19840 0.80951 0.87492 0.81570 1.90721 1.38060 1.59988 1.49450 1.42952 1.46056 1.11977 1.26621 1.17581 0.94480 0.84547 1.04206 1.20789 0.98508 0.93122 0.97472 1.19936 0.94340 0.94936 1.04442 1.19145 0.95784 0.87119 0.98536 1.45962 1.08534 1.11664 1.56049 0.70140 1.76527 0.94340 1.22464 1.15150 1.25582 0.99771 0.88704 0.97905 1.19909 0.95172 0.95504 1.08634 1.20532 0.95770 0.93461 0.97823 1.22767 1.00392 0.78759 0.98547 0.91985 0.77441 0.89518 0.89115 0.87460 0.91186 0.73029 0.81748 0.81553 0.76216 0.85220 0.93654 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.18 10.96 21.45 0.24 -47.94 16 2 C 0.03 1.41 5.28 84.66 0.45 1.85 16 3 Si 0.96 41.14 29.54 68.60 2.03 43.16 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -28.42 8.13 25.60 0.21 -28.21 16 8 H 0.07 3.40 7.78 -2.91 -0.02 3.37 16 9 C 0.23 11.09 0.85 -10.35 -0.01 11.09 16 10 O -0.59 -29.24 13.07 -148.98 -1.95 -31.19 16 11 C -0.11 -4.46 6.23 31.98 0.20 -4.26 16 12 C 0.11 3.89 6.08 86.79 0.53 4.42 16 13 N -0.58 -23.63 3.34 -812.66 -2.71 -26.34 16 14 C 0.51 19.02 7.91 87.24 0.69 19.71 16 15 O -0.56 -23.11 16.81 -3.27 -0.05 -23.16 16 16 C 0.52 15.75 7.58 87.24 0.66 16.41 16 17 O -0.51 -16.16 11.49 -3.35 -0.04 -16.20 16 18 N -0.63 -14.64 5.33 -304.81 -1.62 -16.26 16 19 C 0.09 1.80 6.27 38.15 0.24 2.04 16 20 C -0.08 -1.11 9.87 22.18 0.22 -0.89 16 21 C -0.11 -1.46 10.01 22.11 0.22 -1.24 16 22 C 0.11 1.92 7.33 39.19 0.29 2.20 16 23 N -0.50 -7.85 7.38 -51.44 -0.38 -8.23 16 24 H 0.45 4.03 8.96 -213.48 -1.91 2.12 16 25 N -0.27 -5.25 12.55 -53.08 -0.67 -5.92 16 26 C 0.08 1.43 12.28 86.93 1.07 2.49 16 27 C -0.18 -3.81 6.36 -20.24 -0.13 -3.94 16 28 C -0.05 -1.21 8.71 22.65 0.20 -1.01 16 29 C 0.12 5.62 5.23 86.73 0.45 6.07 16 30 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 31 H 0.38 19.35 7.44 -74.06 -0.55 18.79 16 32 H 0.09 3.19 8.04 -2.39 -0.02 3.17 16 33 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 34 H 0.11 3.45 6.17 -2.39 -0.01 3.44 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.43 8.57 8.29 -92.72 -0.77 7.80 16 37 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.22 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.13 3.24 6.42 -2.91 -0.02 3.22 16 41 H 0.05 2.37 7.91 -2.39 -0.02 2.35 16 42 H 0.05 2.51 7.81 -2.38 -0.02 2.49 16 Total: -1.00 -65.77 357.51 -1.98 -67.76 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: -2.11 Total: 37.59 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: 5.28 Total: 26.73 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -5.14 Total: -104.69 kcal Atomic # 8 Polarization: -68.50 SS G_CDS: -2.04 Total: -70.55 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -65.77 -1.98 -67.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592300994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.728 kcal (2) G-P(sol) polarization free energy of solvation -65.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds