Wall clock time and date at job start Wed Apr 1 2020 02:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34514 * 124.44441 * 2 1 4 4 O 1.21428 * 125.72290 * 359.96774 * 3 2 1 5 5 C 1.48047 * 108.55058 * 180.23844 * 3 2 1 6 6 C 1.38585 * 134.10747 * 179.70237 * 5 3 2 7 7 C 1.38451 * 119.89308 * 180.02562 * 6 5 3 8 8 C 1.39458 * 120.31247 * 0.02562 * 7 6 5 9 9 C 1.48014 * 119.92416 * 180.02562 * 8 7 6 10 10 O 1.21531 * 120.00308 * 352.10881 * 9 8 7 11 11 N 1.34778 * 120.00223 * 172.10371 * 9 8 7 12 12 C 1.47022 * 125.64764 * 5.36058 * 11 9 8 13 13 C 1.54315 * 107.27236 * 181.02229 * 12 11 9 14 14 C 1.55153 * 102.94359 * 22.18873 * 13 12 11 15 15 O 1.42899 * 111.00003 * 82.57696 * 14 13 12 16 16 C 1.50700 * 111.00686 * 206.38426 * 14 13 12 17 17 H 1.07997 * 120.00024 * 0.02562 * 16 14 13 18 18 C 1.37872 * 120.00212 * 180.02562 * 16 14 13 19 19 N 1.31513 * 120.00133 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00212 * 180.02562 * 18 16 14 21 21 H 1.48512 * 109.47061 * 90.00180 * 20 18 16 22 22 H 1.48501 * 109.47440 * 209.99698 * 20 18 16 23 23 H 1.48500 * 109.47172 * 330.00607 * 20 18 16 24 24 C 1.47426 * 125.65090 * 185.04755 * 11 9 8 25 25 C 1.39765 * 120.15346 * 0.02562 * 8 7 6 26 26 C 1.38431 * 119.61912 * 359.97438 * 25 8 7 27 27 C 1.34501 * 124.44346 * 179.79718 * 2 1 3 28 28 O 1.21443 * 125.69098 * 0.03296 * 27 2 1 29 29 H 1.09003 * 109.47499 * 270.19686 * 1 2 3 30 30 H 1.09004 * 109.47465 * 30.20073 * 1 2 3 31 31 H 1.09000 * 109.46972 * 150.19473 * 1 2 3 32 32 H 1.07994 * 120.05274 * 0.03635 * 6 5 3 33 33 H 1.08006 * 119.83766 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.88161 * 300.44066 * 12 11 9 35 35 H 1.09002 * 109.88115 * 61.44461 * 12 11 9 36 36 H 1.08996 * 110.72263 * 140.55975 * 13 12 11 37 37 H 1.09002 * 110.72000 * 263.82951 * 13 12 11 38 38 H 0.96698 * 114.00003 * 180.02562 * 15 14 13 39 39 H 0.96995 * 120.00571 * 179.97438 * 19 18 16 40 40 H 1.08995 * 110.37046 * 274.75463 * 24 11 9 41 41 H 1.09000 * 110.36174 * 37.07507 * 24 11 9 42 42 H 1.08006 * 120.19215 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2258 1.1093 0.0000 4 8 1.8139 2.2516 -0.0006 5 6 3.6497 0.7039 -0.0058 6 6 4.8499 1.3968 -0.0135 7 6 6.0476 0.7023 -0.0180 8 6 6.0526 -0.6923 -0.0154 9 6 7.3380 -1.4261 -0.0197 10 8 8.3820 -0.8223 -0.1700 11 7 7.3509 -2.7639 0.1431 12 6 6.1646 -3.6288 0.2230 13 6 6.6642 -5.0733 0.4355 14 6 8.0827 -4.8666 1.0292 15 8 8.0188 -4.6248 2.4361 16 6 8.9720 -6.0450 0.7266 17 1 8.5868 -6.8814 0.1623 18 6 10.2774 -6.0554 1.1700 19 7 10.7465 -5.0372 1.8576 20 14 11.3799 -7.5158 0.7942 21 1 12.0812 -7.2879 -0.4949 22 1 12.3801 -7.6734 1.8805 23 1 10.5551 -8.7469 0.6981 24 6 8.5568 -3.6033 0.2640 25 6 4.8466 -1.3987 -0.0088 26 6 3.6480 -0.7060 -0.0043 27 6 2.2257 -1.1092 0.0039 28 8 1.8131 -2.2514 0.0074 29 1 -0.3634 0.0035 1.0277 30 1 -0.3634 0.8882 -0.5170 31 1 -0.3633 -0.8917 -0.5108 32 1 4.8509 2.4767 -0.0158 33 1 6.9824 1.2432 -0.0244 34 1 5.5403 -3.3250 1.0633 35 1 5.5952 -3.5636 -0.7042 36 1 6.0242 -5.6029 1.1412 37 1 6.7175 -5.6066 -0.5136 38 1 8.8814 -4.4892 2.8515 39 1 11.6647 -5.0446 2.1699 40 1 8.9317 -3.8733 -0.7232 41 1 9.3263 -3.0819 0.8333 42 1 4.8497 -2.4787 -0.0072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592836965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:03 Heat of formation + Delta-G solvation = -87.356099 kcal Electronic energy + Delta-G solvation = -29864.015139 eV Core-core repulsion = 25582.451515 eV Total energy + Delta-G solvation = -4281.563624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.48724 -41.52029 -39.87951 -39.50353 -38.69992 -37.03724 -36.30523 -34.14929 -33.49022 -32.76412 -31.74800 -29.68566 -28.93126 -27.37029 -26.24301 -25.36054 -23.84477 -23.42179 -21.78602 -21.33087 -20.45961 -19.30366 -19.02004 -18.38169 -18.06316 -17.96613 -17.19666 -16.92755 -16.81692 -16.62758 -16.29719 -15.92253 -15.69349 -15.25283 -15.23570 -14.96848 -14.84475 -14.65046 -14.40384 -14.33448 -13.67410 -13.61976 -13.54207 -13.50584 -13.36364 -13.00604 -12.81600 -12.37652 -12.33212 -12.22108 -12.13149 -11.73244 -11.59951 -11.18422 -11.11449 -11.03135 -10.63501 -10.45795 -10.42476 -10.32595 -9.57645 -8.26099 -6.42225 -1.31881 -0.34497 0.56404 1.17749 1.42889 1.45982 1.54997 1.66049 1.74974 1.88905 2.35807 2.39541 2.50884 3.00429 3.05020 3.27645 3.39235 3.70529 3.80202 3.94333 4.04962 4.08242 4.12453 4.23271 4.26371 4.32786 4.41227 4.45943 4.57504 4.64777 4.71094 4.72816 4.80770 4.95222 4.99759 5.04825 5.22350 5.31319 5.37942 5.44249 5.44696 5.76553 5.94858 6.03634 6.44665 6.48530 6.66062 6.96736 7.30458 7.39845 8.79583 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.002722 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.947913 B =10284.041992 C =11233.970276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.577 5.577 3 C 0.584 3.416 4 O -0.477 6.477 5 C -0.124 4.124 6 C -0.034 4.034 7 C -0.031 4.031 8 C -0.110 4.110 9 C 0.556 3.444 10 O -0.579 6.579 11 N -0.602 5.602 12 C 0.089 3.911 13 C -0.116 4.116 14 C 0.233 3.767 15 O -0.589 6.589 16 C -0.554 4.554 17 H 0.071 0.929 18 C 0.026 3.974 19 N -0.917 5.917 20 Si 0.964 3.036 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.266 1.266 24 C 0.105 3.895 25 C -0.048 4.048 26 C -0.155 4.155 27 C 0.582 3.418 28 O -0.478 6.478 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.181 0.819 33 H 0.162 0.838 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.378 0.622 39 H 0.271 0.729 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.762 10.565 -4.590 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.319 5.319 3 C 0.373 3.627 4 O -0.349 6.349 5 C -0.128 4.128 6 C -0.052 4.052 7 C -0.050 4.050 8 C -0.113 4.113 9 C 0.346 3.654 10 O -0.461 6.461 11 N -0.333 5.333 12 C -0.032 4.032 13 C -0.154 4.154 14 C 0.192 3.808 15 O -0.399 6.399 16 C -0.593 4.593 17 H 0.089 0.911 18 C -0.174 4.174 19 N -0.557 5.557 20 Si 0.789 3.211 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.017 4.017 25 C -0.066 4.066 26 C -0.159 4.159 27 C 0.372 3.628 28 O -0.350 6.350 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.198 0.802 33 H 0.179 0.821 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.229 0.771 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.286 10.924 -4.694 21.811 hybrid contribution 1.756 -0.700 0.137 1.896 sum -16.529 10.224 -4.557 19.963 Atomic orbital electron populations 1.22213 0.73204 1.06015 1.05224 1.46456 1.10569 1.07516 1.67348 1.18337 0.86425 0.83899 0.74023 1.90807 1.79557 1.19802 1.44782 1.20840 0.94308 0.94249 1.03441 1.20977 0.87731 1.02370 0.94154 1.21748 0.99978 0.91847 0.91405 1.20013 0.91708 0.95139 1.04438 1.18333 0.89054 0.80842 0.77128 1.90741 1.34946 1.67844 1.52555 1.48684 1.10091 1.05614 1.68872 1.22763 0.87475 0.90624 1.02306 1.22721 0.95886 0.94900 1.01856 1.19876 0.92505 0.89613 0.78787 1.86060 1.36158 1.94393 1.23264 1.21829 0.96656 1.04636 1.36132 0.91085 1.25802 0.99243 0.98506 0.93864 1.69658 1.17220 1.31496 1.37358 0.85461 0.78270 0.79642 0.77688 1.20269 1.21061 1.19033 1.22998 0.86564 0.92520 0.99642 1.22355 0.88642 1.03982 0.91602 1.20377 0.93547 0.94697 1.07244 1.18282 0.86404 0.84025 0.74087 1.90823 1.79541 1.20006 1.44677 0.89344 0.87943 0.88207 0.80175 0.82073 0.89514 0.87711 0.89375 0.88746 0.77113 0.91966 0.92861 0.93498 0.80135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 10.77 127.77 1.38 2.17 16 2 N -0.58 -10.19 3.02 -786.16 -2.38 -12.57 16 3 C 0.58 11.26 8.03 86.89 0.70 11.96 16 4 O -0.48 -10.72 17.68 -3.49 -0.06 -10.78 16 5 C -0.12 -2.36 6.41 -19.92 -0.13 -2.49 16 6 C -0.03 -0.56 10.08 22.40 0.23 -0.33 16 7 C -0.03 -0.65 9.58 22.61 0.22 -0.43 16 8 C -0.11 -2.94 5.88 -20.02 -0.12 -3.06 16 9 C 0.56 20.40 7.81 86.84 0.68 21.08 16 10 O -0.58 -25.30 16.65 -3.81 -0.06 -25.36 16 11 N -0.60 -22.85 3.32 -827.57 -2.75 -25.60 16 12 C 0.09 2.72 4.87 86.73 0.42 3.14 16 13 C -0.12 -4.11 6.12 31.78 0.19 -3.92 16 14 C 0.23 10.73 0.89 -10.07 -0.01 10.72 16 15 O -0.59 -29.37 13.19 -148.98 -1.97 -31.34 16 16 C -0.55 -27.67 8.25 25.60 0.21 -27.46 16 17 H 0.07 3.42 7.76 -2.91 -0.02 3.40 16 18 C 0.03 1.34 5.30 84.65 0.45 1.79 16 19 N -0.92 -48.43 10.72 21.45 0.23 -48.20 16 20 Si 0.96 40.62 29.54 68.60 2.03 42.65 16 21 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 C 0.11 4.87 5.63 86.93 0.49 5.36 16 25 C -0.05 -1.12 8.62 22.69 0.20 -0.92 16 26 C -0.15 -3.30 6.39 -20.02 -0.13 -3.42 16 27 C 0.58 12.41 8.02 86.83 0.70 13.11 16 28 O -0.48 -12.21 17.67 -3.54 -0.06 -12.28 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.90 7.97 -2.39 -0.02 0.88 16 31 H 0.10 0.96 7.96 -2.39 -0.02 0.94 16 32 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.16 3.24 7.64 -2.91 -0.02 3.22 16 34 H 0.09 2.43 6.65 -2.38 -0.02 2.42 16 35 H 0.11 2.46 6.79 -2.39 -0.02 2.44 16 36 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.09 3.07 8.01 -2.39 -0.02 3.05 16 38 H 0.38 20.00 6.93 -74.06 -0.51 19.49 16 39 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 40 H 0.05 2.53 8.04 -2.39 -0.02 2.51 16 41 H 0.05 2.50 7.70 -2.39 -0.02 2.48 16 42 H 0.18 4.12 2.76 -7.90 -0.02 4.10 16 Total: -1.00 -66.08 356.63 1.03 -65.05 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.58 Total: 31.15 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: 5.47 Total: 27.29 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -4.90 Total: -86.37 kcal Atomic # 8 Polarization: -77.61 SS G_CDS: -2.15 Total: -79.76 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -66.08 1.03 -65.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592836965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.304 kcal (2) G-P(sol) polarization free energy of solvation -66.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds