Wall clock time and date at job start Wed Apr 1 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34780 * 116.99691 * 2 1 4 4 O 1.21527 * 120.00239 * 0.02562 * 3 2 1 5 5 C 1.47275 * 119.99544 * 180.02562 * 3 2 1 6 6 N 1.36107 * 126.46230 * 0.02562 * 5 3 2 7 7 C 1.29913 * 108.47688 * 180.02562 * 6 5 3 8 8 O 1.34056 * 109.26368 * 359.97438 * 7 6 5 9 9 C 1.34238 * 108.24161 * 0.02562 * 8 7 6 10 10 C 1.50697 * 126.53270 * 180.02562 * 9 8 7 11 11 C 1.53009 * 109.46847 * 269.97385 * 10 9 8 12 12 C 1.50697 * 109.46847 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00167 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99759 * 179.97438 * 12 11 10 15 15 C 1.39239 * 120.00032 * 175.70715 * 14 12 11 16 16 C 1.39477 * 119.83536 * 215.01502 * 15 14 12 17 17 C 1.36375 * 120.17256 * 179.75985 * 16 15 14 18 18 C 1.40871 * 119.82339 * 0.51582 * 17 16 15 19 19 C 1.41158 * 120.16495 * 179.72129 * 18 17 16 20 20 H 1.07995 * 119.99887 * 214.80589 * 19 18 17 21 21 C 1.39898 * 119.99756 * 34.79554 * 19 18 17 22 22 N 1.30869 * 120.00316 * 355.56723 * 21 19 18 23 23 Si 1.86808 * 119.99895 * 175.56364 * 21 19 18 24 24 H 1.48503 * 109.47042 * 89.99998 * 23 21 19 25 25 H 1.48501 * 109.46995 * 210.00300 * 23 21 19 26 26 H 1.48503 * 109.46723 * 330.00257 * 23 21 19 27 27 C 1.40869 * 119.67458 * 359.73541 * 18 17 16 28 28 C 1.36373 * 119.82901 * 0.02562 * 27 18 17 29 29 H 1.09001 * 109.47043 * 299.99671 * 1 2 3 30 30 H 1.09002 * 109.47174 * 59.99076 * 1 2 3 31 31 H 1.08992 * 109.47335 * 180.02562 * 1 2 3 32 32 H 1.08004 * 125.37148 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.46881 * 29.96848 * 10 9 8 34 34 H 1.08998 * 109.47388 * 149.97612 * 10 9 8 35 35 H 1.08994 * 109.46842 * 300.00153 * 11 10 9 36 36 H 1.08998 * 109.46941 * 59.99953 * 11 10 9 37 37 H 0.97000 * 119.99827 * 355.71245 * 14 12 11 38 38 H 1.08000 * 119.91467 * 0.02562 * 16 15 14 39 39 H 1.07995 * 120.09165 * 180.25327 * 17 16 15 40 40 H 0.97009 * 120.00351 * 179.97438 * 22 21 19 41 41 H 1.07997 * 120.08943 * 179.97438 * 27 18 17 42 42 H 1.07995 * 119.92200 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4019 2.2201 0.0005 5 6 3.5346 1.2780 -0.0006 6 7 4.3996 0.2271 -0.0016 7 6 5.6126 0.6924 -0.0013 8 8 5.5723 2.0323 -0.0006 9 6 4.2854 2.4141 0.0001 10 6 3.7697 3.8301 0.0004 11 6 3.5952 4.3089 1.4432 12 6 3.0801 5.7251 1.4435 13 8 2.8734 6.2955 0.3934 14 7 2.8492 6.3578 2.6109 15 6 2.4591 7.6945 2.6130 16 6 2.8949 8.5429 3.6307 17 6 2.5210 9.8544 3.6369 18 6 1.6836 10.3489 2.6178 19 6 1.2873 11.7037 2.6204 20 1 0.3039 11.9794 2.2695 21 6 2.1686 12.6893 3.0777 22 7 3.3263 12.3483 3.5837 23 14 1.6927 14.4923 2.9662 24 1 0.9885 14.8963 4.2096 25 1 2.9160 15.3177 2.7995 26 1 0.7954 14.6962 1.8006 27 6 1.2432 9.4847 1.5962 28 6 1.6295 8.1768 1.6008 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 6.5117 0.0940 -0.0023 33 1 4.4816 4.4761 -0.5132 34 1 2.8090 3.8671 -0.5133 35 1 2.8834 3.6628 1.9568 36 1 4.5559 4.2719 1.9569 37 1 2.9549 5.8821 3.4496 38 1 3.5337 8.1613 4.4135 39 1 2.8626 10.5111 4.4232 40 1 3.9376 13.0317 3.9005 41 1 0.6007 9.8566 0.8119 42 1 1.2924 7.5128 0.8186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596671331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:07 Heat of formation + Delta-G solvation = -74.205541 kcal Electronic energy + Delta-G solvation = -28340.195357 eV Core-core repulsion = 24059.201984 eV Total energy + Delta-G solvation = -4280.993373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.91412 -40.48785 -39.74527 -37.37525 -36.81388 -35.30195 -34.60442 -34.09047 -32.90992 -30.31410 -29.57608 -28.88361 -28.14529 -25.94007 -24.66392 -24.04239 -22.40565 -21.54739 -21.00157 -20.64241 -19.60749 -18.70610 -17.56385 -17.35182 -17.31103 -16.84311 -16.48812 -16.40554 -16.07340 -15.75034 -15.18848 -14.86376 -14.29661 -13.97056 -13.87684 -13.63005 -13.49366 -13.35689 -12.80092 -12.62267 -12.44597 -12.39937 -12.12357 -11.82573 -11.70765 -11.53582 -11.35736 -11.21987 -11.15009 -11.09039 -10.97721 -10.81186 -10.72236 -10.04151 -9.53813 -9.47072 -9.40239 -9.10537 -8.87407 -7.54530 -6.86478 -6.61684 -4.34131 0.53536 1.50850 1.99066 2.38309 2.53953 2.67937 3.01309 3.08694 3.10317 3.14289 3.33218 3.59147 3.68551 3.98244 4.18293 4.44785 4.65729 4.69977 4.77105 4.82053 4.91296 4.92025 5.12307 5.21184 5.26215 5.39137 5.58767 5.66210 5.73412 5.79316 6.04651 6.19116 6.45830 6.75294 6.91877 6.96496 7.07185 7.20960 7.29840 7.43282 7.64306 7.74125 7.86541 8.06559 8.25529 8.31818 8.62140 8.73002 8.93077 9.00129 10.29352 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.022375 B = 0.001960 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.074478 B =14279.435470 C =15016.322536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.340 6.340 3 C 0.551 3.449 4 O -0.488 6.488 5 C -0.066 4.066 6 N -0.448 5.448 7 C 0.177 3.823 8 O -0.191 6.191 9 C 0.072 3.928 10 C -0.034 4.034 11 C -0.132 4.132 12 C 0.504 3.496 13 O -0.529 6.529 14 N -0.651 5.651 15 C 0.003 3.997 16 C -0.121 4.121 17 C -0.142 4.142 18 C 0.099 3.901 19 C -0.460 4.460 20 H 0.076 0.924 21 C 0.069 3.931 22 N -0.812 5.812 23 Si 0.915 3.085 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.205 4.205 28 C -0.085 4.085 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.259 0.741 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.396 0.604 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.277 0.723 41 H 0.096 0.904 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.509 -22.891 -2.981 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.256 6.256 3 C 0.394 3.606 4 O -0.375 6.375 5 C -0.184 4.184 6 N -0.176 5.176 7 C -0.052 4.052 8 O -0.077 6.077 9 C 0.015 3.985 10 C -0.071 4.071 11 C -0.172 4.172 12 C 0.290 3.710 13 O -0.406 6.406 14 N -0.293 5.293 15 C -0.089 4.089 16 C -0.141 4.141 17 C -0.162 4.162 18 C 0.097 3.903 19 C -0.491 4.491 20 H 0.094 0.906 21 C -0.146 4.146 22 N -0.440 5.440 23 Si 0.740 3.260 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.225 4.225 28 C -0.105 4.105 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.275 0.725 33 H 0.120 0.880 34 H 0.145 0.855 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.229 0.771 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.187 -22.726 -3.641 23.236 hybrid contribution 0.256 1.014 0.398 1.119 sum 3.443 -21.713 -3.242 22.222 Atomic orbital electron populations 1.23370 0.75530 1.04000 1.02987 1.86639 1.23595 1.31538 1.83828 1.19374 0.86088 0.82015 0.73080 1.90949 1.65347 1.35630 1.45572 1.20242 0.92504 0.89358 1.16278 1.70842 0.99927 1.31074 1.15806 1.28157 0.98465 0.77960 1.00644 1.84462 1.28044 1.26378 1.68811 1.23914 0.80153 0.97902 0.96530 1.20272 1.04090 0.84479 0.98297 1.21547 1.03435 0.95225 0.97012 1.20231 0.78740 0.87643 0.84374 1.90703 1.51420 1.67276 1.31167 1.42966 1.66916 1.11486 1.07945 1.17272 1.06524 0.82640 1.02513 1.20313 1.01153 0.94414 0.98205 1.21193 1.02180 0.92718 1.00103 1.17735 0.90612 0.92783 0.89169 1.19496 1.01057 0.91201 1.37362 0.90611 1.25880 0.94411 1.01597 0.92691 1.69762 1.07411 1.35481 1.31299 0.86197 0.78829 0.81393 0.79554 1.19537 1.20314 1.18723 1.20817 1.07674 0.93999 1.00056 1.20413 0.96510 0.95994 0.97550 0.91498 0.91528 0.87769 0.72546 0.87957 0.85538 0.88623 0.88662 0.77069 0.89104 0.85026 0.91164 0.88574 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 101.05 1.07 1.33 16 2 O -0.34 -3.82 10.58 -40.71 -0.43 -4.25 16 3 C 0.55 6.87 7.96 34.40 0.27 7.14 16 4 O -0.49 -6.86 14.60 -19.29 -0.28 -7.14 16 5 C -0.07 -0.77 7.04 -83.04 -0.58 -1.36 16 6 N -0.45 -4.72 11.36 -11.50 -0.13 -4.85 16 7 C 0.18 1.23 13.19 51.95 0.69 1.92 16 8 O -0.19 -1.70 10.72 6.55 0.07 -1.63 16 9 C 0.07 0.77 6.70 -35.05 -0.23 0.54 16 10 C -0.03 -0.40 4.50 -27.88 -0.13 -0.52 16 11 C -0.13 -1.53 5.68 -27.88 -0.16 -1.69 16 12 C 0.50 8.43 7.66 -10.99 -0.08 8.35 16 13 O -0.53 -10.99 13.40 5.56 0.07 -10.91 16 14 N -0.65 -11.19 5.30 -9.74 -0.05 -11.24 16 15 C 0.00 0.06 6.31 -83.57 -0.53 -0.47 16 16 C -0.12 -2.74 9.90 -39.79 -0.39 -3.13 16 17 C -0.14 -3.65 8.62 -39.26 -0.34 -3.99 16 18 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 19 C -0.46 -12.33 9.02 -37.85 -0.34 -12.67 16 20 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 21 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 22 N -0.81 -21.15 10.60 55.55 0.59 -20.56 16 23 Si 0.92 19.07 29.56 -169.99 -5.03 14.04 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 27 C -0.21 -5.24 9.74 -39.26 -0.38 -5.62 16 28 C -0.08 -2.04 8.61 -39.79 -0.34 -2.38 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 0.35 8.06 -52.48 -0.42 -0.07 16 33 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.13 1.70 6.44 -51.93 -0.33 1.37 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.40 5.27 8.82 -40.82 -0.36 4.91 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.13 3.49 6.13 -52.49 -0.32 3.17 16 40 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 41 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 42 H 0.11 2.58 6.22 -52.49 -0.33 2.25 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -34.00 370.63 -6.47 -40.47 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.69 Total: 9.31 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.17 Total: -8.81 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.41 Total: -36.65 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.57 Total: -23.93 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.00 -6.47 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596671331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.740 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds