Wall clock time and date at job start Wed Apr 1 2020 03:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34780 * 116.99691 * 2 1 4 4 O 1.21527 * 120.00239 * 0.02562 * 3 2 1 5 5 C 1.47275 * 119.99544 * 180.02562 * 3 2 1 6 6 N 1.36107 * 126.46230 * 0.02562 * 5 3 2 7 7 C 1.29913 * 108.47688 * 180.02562 * 6 5 3 8 8 O 1.34056 * 109.26368 * 359.97438 * 7 6 5 9 9 C 1.34238 * 108.24161 * 0.02562 * 8 7 6 10 10 C 1.50697 * 126.53270 * 180.02562 * 9 8 7 11 11 C 1.53009 * 109.46847 * 269.97385 * 10 9 8 12 12 C 1.50697 * 109.46847 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00167 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99759 * 179.97438 * 12 11 10 15 15 C 1.39239 * 120.00032 * 175.70715 * 14 12 11 16 16 C 1.39477 * 119.83536 * 215.01502 * 15 14 12 17 17 C 1.36375 * 120.17256 * 179.75985 * 16 15 14 18 18 C 1.40871 * 119.82339 * 0.51582 * 17 16 15 19 19 C 1.41158 * 120.16495 * 179.72129 * 18 17 16 20 20 H 1.07995 * 119.99887 * 214.80589 * 19 18 17 21 21 C 1.39898 * 119.99756 * 34.79554 * 19 18 17 22 22 N 1.30869 * 120.00316 * 355.56723 * 21 19 18 23 23 Si 1.86808 * 119.99895 * 175.56364 * 21 19 18 24 24 H 1.48503 * 109.47042 * 89.99998 * 23 21 19 25 25 H 1.48501 * 109.46995 * 210.00300 * 23 21 19 26 26 H 1.48503 * 109.46723 * 330.00257 * 23 21 19 27 27 C 1.40869 * 119.67458 * 359.73541 * 18 17 16 28 28 C 1.36373 * 119.82901 * 0.02562 * 27 18 17 29 29 H 1.09001 * 109.47043 * 299.99671 * 1 2 3 30 30 H 1.09002 * 109.47174 * 59.99076 * 1 2 3 31 31 H 1.08992 * 109.47335 * 180.02562 * 1 2 3 32 32 H 1.08004 * 125.37148 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.46881 * 29.96848 * 10 9 8 34 34 H 1.08998 * 109.47388 * 149.97612 * 10 9 8 35 35 H 1.08994 * 109.46842 * 300.00153 * 11 10 9 36 36 H 1.08998 * 109.46941 * 59.99953 * 11 10 9 37 37 H 0.97000 * 119.99827 * 355.71245 * 14 12 11 38 38 H 1.08000 * 119.91467 * 0.02562 * 16 15 14 39 39 H 1.07995 * 120.09165 * 180.25327 * 17 16 15 40 40 H 0.97009 * 120.00351 * 179.97438 * 22 21 19 41 41 H 1.07997 * 120.08943 * 179.97438 * 27 18 17 42 42 H 1.07995 * 119.92200 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4019 2.2201 0.0005 5 6 3.5346 1.2780 -0.0006 6 7 4.3996 0.2271 -0.0016 7 6 5.6126 0.6924 -0.0013 8 8 5.5723 2.0323 -0.0006 9 6 4.2854 2.4141 0.0001 10 6 3.7697 3.8301 0.0004 11 6 3.5952 4.3089 1.4432 12 6 3.0801 5.7251 1.4435 13 8 2.8734 6.2955 0.3934 14 7 2.8492 6.3578 2.6109 15 6 2.4591 7.6945 2.6130 16 6 2.8949 8.5429 3.6307 17 6 2.5210 9.8544 3.6369 18 6 1.6836 10.3489 2.6178 19 6 1.2873 11.7037 2.6204 20 1 0.3039 11.9794 2.2695 21 6 2.1686 12.6893 3.0777 22 7 3.3263 12.3483 3.5837 23 14 1.6927 14.4923 2.9662 24 1 0.9885 14.8963 4.2096 25 1 2.9160 15.3177 2.7995 26 1 0.7954 14.6962 1.8006 27 6 1.2432 9.4847 1.5962 28 6 1.6295 8.1768 1.6008 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 6.5117 0.0940 -0.0023 33 1 4.4816 4.4761 -0.5132 34 1 2.8090 3.8671 -0.5133 35 1 2.8834 3.6628 1.9568 36 1 4.5559 4.2719 1.9569 37 1 2.9549 5.8821 3.4496 38 1 3.5337 8.1613 4.4135 39 1 2.8626 10.5111 4.4232 40 1 3.9376 13.0317 3.9005 41 1 0.6007 9.8566 0.8119 42 1 1.2924 7.5128 0.8186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596671331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:06 Heat of formation + Delta-G solvation = -98.006145 kcal Electronic energy + Delta-G solvation = -28341.227429 eV Core-core repulsion = 24059.201984 eV Total energy + Delta-G solvation = -4282.025445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.61853 -41.38171 -41.23184 -39.14311 -37.70996 -36.23518 -36.01976 -35.17382 -34.68369 -31.53990 -31.32307 -30.46736 -28.93841 -27.28445 -25.95838 -24.96144 -23.47546 -23.06456 -22.49461 -21.72913 -21.10143 -19.47848 -19.27910 -18.57319 -18.22884 -17.95967 -17.86625 -17.21728 -17.05579 -16.90501 -16.81181 -15.88076 -15.66280 -15.43430 -15.03204 -14.83387 -14.55306 -14.42438 -14.35439 -14.04974 -13.94877 -13.58638 -13.42059 -13.21403 -13.07266 -12.85603 -12.78667 -12.56923 -12.47904 -12.41190 -12.02400 -11.88065 -11.79305 -11.66975 -11.39776 -11.20838 -10.83342 -10.60718 -10.17319 -9.46934 -8.73286 -8.50564 -6.33271 -0.28593 0.78729 0.84348 1.13594 1.25014 1.39406 1.44296 1.53304 1.66665 1.78543 1.85466 2.23856 2.35140 2.80262 3.04215 3.33363 3.57797 3.68036 3.76420 3.92109 4.01627 4.24418 4.29052 4.30471 4.36169 4.40533 4.46972 4.55476 4.67513 4.85058 4.88324 4.94047 5.05526 5.14135 5.14933 5.21573 5.34634 5.43723 5.69664 5.90922 6.02193 6.13685 6.25947 6.39143 6.60105 6.66562 6.71514 6.96607 6.99763 7.37665 8.42106 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.022375 B = 0.001960 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.074478 B =14279.435470 C =15016.322536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.548 3.452 4 O -0.514 6.514 5 C -0.080 4.080 6 N -0.484 5.484 7 C 0.209 3.791 8 O -0.189 6.189 9 C 0.070 3.930 10 C -0.029 4.029 11 C -0.116 4.116 12 C 0.503 3.497 13 O -0.571 6.571 14 N -0.645 5.645 15 C 0.021 3.979 16 C -0.118 4.118 17 C -0.160 4.160 18 C 0.067 3.933 19 C -0.498 4.498 20 H 0.071 0.929 21 C 0.027 3.973 22 N -0.841 5.841 23 Si 0.988 3.012 24 H -0.259 1.259 25 H -0.269 1.269 26 H -0.264 1.264 27 C -0.222 4.222 28 C -0.097 4.097 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.135 0.865 32 H 0.312 0.688 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.419 0.581 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.285 0.715 41 H 0.094 0.906 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 -24.823 -2.260 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.392 3.608 4 O -0.403 6.403 5 C -0.197 4.197 6 N -0.212 5.212 7 C -0.020 4.020 8 O -0.076 6.076 9 C 0.012 3.988 10 C -0.067 4.067 11 C -0.155 4.155 12 C 0.292 3.708 13 O -0.451 6.451 14 N -0.290 5.290 15 C -0.073 4.073 16 C -0.138 4.138 17 C -0.180 4.180 18 C 0.064 3.936 19 C -0.529 4.529 20 H 0.090 0.910 21 C -0.185 4.185 22 N -0.468 5.468 23 Si 0.809 3.191 24 H -0.184 1.184 25 H -0.193 1.193 26 H -0.188 1.188 27 C -0.242 4.242 28 C -0.118 4.118 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.327 0.673 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.256 0.744 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.973 -24.731 -2.893 25.392 hybrid contribution -0.237 1.347 0.123 1.373 sum 4.736 -23.384 -2.770 24.020 Atomic orbital electron populations 1.23657 0.73859 1.06066 1.02909 1.86632 1.25350 1.31035 1.83426 1.19646 0.86682 0.81973 0.72456 1.90930 1.66058 1.36364 1.46984 1.20273 0.92331 0.90194 1.16889 1.70852 1.01055 1.31162 1.18130 1.29405 0.99028 0.77238 0.96322 1.84486 1.26852 1.27436 1.68812 1.23503 0.80838 0.96981 0.97452 1.20057 1.03133 0.85413 0.98110 1.21495 1.05164 0.91262 0.97626 1.21128 0.77256 0.89214 0.83231 1.90695 1.52918 1.68718 1.32738 1.42914 1.66715 1.09715 1.09613 1.17324 1.04294 0.84804 1.00835 1.20572 1.00807 0.93338 0.99052 1.21189 1.02934 0.94017 0.99835 1.18045 0.91947 0.93446 0.90140 1.19710 1.01616 0.92063 1.39464 0.91049 1.26733 0.94062 1.05862 0.91803 1.69820 1.08202 1.37126 1.31697 0.85109 0.78696 0.75569 0.79712 1.18383 1.19333 1.18791 1.20934 1.08263 0.94832 1.00171 1.20521 0.97297 0.95525 0.98408 0.91526 0.91699 0.84659 0.67336 0.88038 0.87811 0.87080 0.85233 0.74382 0.85540 0.86251 0.90456 0.88763 0.87514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.57 113.37 1.20 1.60 16 2 O -0.35 -7.64 10.58 -56.91 -0.60 -8.24 16 3 C 0.55 13.51 7.96 70.20 0.56 14.07 16 4 O -0.51 -14.63 14.60 19.75 0.29 -14.35 16 5 C -0.08 -1.78 7.04 40.38 0.28 -1.49 16 6 N -0.48 -9.07 11.36 -305.21 -3.47 -12.53 16 7 C 0.21 2.12 13.19 130.53 1.72 3.84 16 8 O -0.19 -2.77 10.72 0.51 0.01 -2.77 16 9 C 0.07 1.37 6.70 25.20 0.17 1.54 16 10 C -0.03 -0.66 4.50 29.85 0.13 -0.52 16 11 C -0.12 -2.42 5.68 29.85 0.17 -2.25 16 12 C 0.50 16.14 7.66 87.66 0.67 16.81 16 13 O -0.57 -23.79 13.40 -3.03 -0.04 -23.83 16 14 N -0.64 -20.91 5.30 -303.11 -1.61 -22.52 16 15 C 0.02 0.91 6.31 38.57 0.24 1.16 16 16 C -0.12 -5.25 9.90 22.13 0.22 -5.03 16 17 C -0.16 -8.38 8.62 22.48 0.19 -8.18 16 18 C 0.07 3.72 5.55 -21.27 -0.12 3.60 16 19 C -0.50 -27.72 9.02 23.39 0.21 -27.51 16 20 H 0.07 3.86 7.85 -2.91 -0.02 3.83 16 21 C 0.03 1.41 5.42 85.24 0.46 1.87 16 22 N -0.84 -44.56 10.60 21.82 0.23 -44.32 16 23 Si 0.99 39.50 29.56 68.60 2.03 41.53 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 25 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 27 C -0.22 -11.80 9.74 22.48 0.22 -11.58 16 28 C -0.10 -4.79 8.61 22.14 0.19 -4.59 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.31 -0.88 8.06 -2.91 -0.02 -0.90 16 33 H 0.10 2.25 8.10 -2.39 -0.02 2.23 16 34 H 0.10 2.84 6.44 -2.39 -0.02 2.82 16 35 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.42 9.82 8.82 -92.71 -0.82 9.00 16 38 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 39 H 0.12 6.50 6.13 -2.91 -0.02 6.48 16 40 H 0.28 13.68 8.30 -92.70 -0.77 12.91 16 41 H 0.09 4.85 8.06 -2.91 -0.02 4.83 16 42 H 0.11 5.23 6.22 -2.91 -0.02 5.21 16 Total: -1.00 -77.86 370.63 3.64 -74.22 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.27 Total: 29.47 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 6.53 Total: -16.66 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -4.84 Total: -79.38 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.35 Total: -49.18 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -77.86 3.64 -74.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596671331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.784 kcal (2) G-P(sol) polarization free energy of solvation -77.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds