Wall clock time and date at job start Wed Apr 1 2020 02:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81394 * 109.47302 * 2 1 4 4 O 1.42102 * 110.54221 * 68.37706 * 3 2 1 5 5 O 1.42108 * 110.54420 * 291.62720 * 3 2 1 6 6 N 1.65603 * 104.45208 * 180.02562 * 3 2 1 7 7 C 1.46496 * 119.99393 * 64.99975 * 6 3 2 8 8 H 1.09003 * 109.47840 * 335.00329 * 7 6 3 9 9 C 1.53007 * 109.47111 * 95.00431 * 7 6 3 10 10 C 1.50706 * 109.47007 * 215.00032 * 7 6 3 11 11 O 1.21282 * 119.99505 * 331.77202 * 10 7 6 12 12 N 1.34780 * 120.00170 * 151.49831 * 10 7 6 13 13 C 1.46501 * 119.99778 * 355.21889 * 12 10 7 14 14 C 1.50703 * 109.46812 * 91.86309 * 13 12 10 15 15 H 1.08003 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99837 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00278 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00050 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47064 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47411 * 120.00137 * 18 16 14 21 21 H 1.48501 * 109.47528 * 240.00283 * 18 16 14 22 22 C 1.46492 * 119.99928 * 175.22307 * 12 10 7 23 23 C 1.50708 * 109.47229 * 87.31007 * 22 12 10 24 24 C 1.34509 * 125.78476 * 95.42062 * 23 22 12 25 25 C 1.41386 * 106.83957 * 180.02562 * 24 23 22 26 26 C 1.34519 * 106.83884 * 359.97438 * 25 24 23 27 27 O 1.34302 * 125.78735 * 275.11477 * 23 22 12 28 28 H 1.09000 * 109.47169 * 59.99633 * 1 2 3 29 29 H 1.08998 * 109.47590 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46647 * 299.99986 * 1 2 3 31 31 H 1.08998 * 109.46714 * 239.99931 * 2 1 3 32 32 H 1.09000 * 109.47169 * 120.00367 * 2 1 3 33 33 H 0.96996 * 119.99803 * 244.99918 * 6 3 2 34 34 H 1.09000 * 109.46984 * 306.41149 * 9 7 6 35 35 H 1.08996 * 109.46969 * 66.41281 * 9 7 6 36 36 H 1.09002 * 109.46817 * 186.40990 * 9 7 6 37 37 H 1.08993 * 109.47361 * 211.86021 * 13 12 10 38 38 H 1.08998 * 109.47327 * 331.86514 * 13 12 10 39 39 H 0.96997 * 120.00234 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.47147 * 207.30932 * 22 12 10 41 41 H 1.09004 * 109.47366 * 327.31176 * 22 12 10 42 42 H 1.07999 * 126.58393 * 359.96671 * 24 23 22 43 43 H 1.07999 * 126.58429 * 179.97438 * 25 24 23 44 44 H 1.07997 * 125.79099 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3438 1.2370 5 8 1.8386 2.3439 -1.2370 6 7 3.7844 1.5652 -0.0007 7 6 4.4665 0.9672 -1.1510 8 1 3.7804 0.3013 -1.6746 9 6 4.9287 2.0734 -2.1017 10 6 5.6618 0.1829 -0.6741 11 8 6.2286 0.5037 0.3490 12 7 6.0976 -0.8782 -1.3817 13 6 5.3487 -1.3332 -2.5558 14 6 5.8901 -0.6579 -3.7895 15 1 6.7097 0.0406 -3.7072 16 6 5.3391 -0.9318 -5.0233 17 7 4.3407 -1.7820 -5.1235 18 14 6.0105 -0.0954 -6.5527 19 1 7.1248 0.8099 -6.1729 20 1 6.5089 -1.1238 -7.5010 21 1 4.9314 0.6932 -7.1999 22 6 7.3200 -1.5766 -0.9768 23 6 6.9796 -2.6383 0.0372 24 6 6.7562 -3.9376 -0.2293 25 6 6.4728 -4.5661 1.0051 26 6 6.5405 -3.6132 1.9521 27 8 6.8535 -2.4486 1.3608 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.2989 1.8763 0.7604 34 1 4.0818 2.7104 -2.3569 35 1 5.6997 2.6713 -1.6158 36 1 5.3337 1.6264 -3.0096 37 1 5.4534 -2.4133 -2.6574 38 1 4.2955 -1.0798 -2.4356 39 1 3.9533 -1.9750 -5.9916 40 1 7.7790 -2.0414 -1.8493 41 1 8.0169 -0.8635 -0.5362 42 1 6.7865 -4.4101 -1.2000 43 1 6.2455 -5.6107 1.1583 44 1 6.3758 -3.7605 3.0093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597025089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:46 Heat of formation + Delta-G solvation = -91.129453 kcal Electronic energy + Delta-G solvation = -29639.011874 eV Core-core repulsion = 25492.728576 eV Total energy + Delta-G solvation = -4146.283298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.26178 -39.56348 -36.99075 -35.86187 -35.58758 -35.03034 -33.17678 -32.92129 -32.60588 -30.73812 -29.25476 -27.46513 -25.94725 -24.08861 -23.45024 -22.92799 -21.42880 -20.38677 -19.24338 -18.96784 -17.89130 -17.23338 -16.65644 -16.48101 -16.27871 -16.05031 -15.73729 -15.41093 -14.87431 -14.58528 -14.43466 -14.00419 -13.87628 -13.33640 -13.25045 -12.79497 -12.56747 -12.54928 -12.54011 -12.50034 -12.33090 -12.03547 -11.97149 -11.89433 -11.63759 -11.59592 -11.48755 -11.31748 -11.16782 -11.02023 -10.83773 -10.61584 -10.27704 -9.93128 -9.67241 -9.55604 -9.10008 -8.68639 -8.27663 -8.04002 -6.32123 -4.40137 0.34993 1.93642 2.70470 2.84528 3.06402 3.16064 3.26272 3.28117 3.37586 3.72441 3.93442 4.23225 4.27245 4.57936 4.80008 4.94970 4.99145 5.01734 5.11484 5.20341 5.26512 5.31415 5.49293 5.57601 5.62309 5.70850 5.71397 5.84289 5.93139 6.02367 6.17546 6.27863 6.33581 6.43114 6.49432 6.73772 6.82589 6.94154 7.19335 7.24584 7.44094 7.61921 7.86130 8.04173 8.59389 8.73888 9.28582 10.74767 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.006875 B = 0.005881 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4071.642248 B = 4759.613330 C = 7337.646398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.638 4.638 3 S 2.611 3.389 4 O -0.963 6.963 5 O -0.948 6.948 6 N -1.105 6.105 7 C 0.140 3.860 8 H 0.110 0.890 9 C -0.165 4.165 10 C 0.515 3.485 11 O -0.553 6.553 12 N -0.589 5.589 13 C 0.233 3.767 14 C -0.543 4.543 15 H 0.068 0.932 16 C 0.069 3.931 17 N -0.887 5.887 18 Si 0.895 3.105 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.280 1.280 22 C 0.198 3.802 23 C -0.015 4.015 24 C -0.204 4.204 25 C -0.217 4.217 26 C -0.052 4.052 27 O -0.163 6.163 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.422 0.578 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.267 0.733 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 -2.258 8.953 9.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.767 4.767 3 S 2.703 3.297 4 O -0.954 6.954 5 O -0.938 6.938 6 N -0.865 5.865 7 C 0.030 3.970 8 H 0.128 0.872 9 C -0.224 4.224 10 C 0.301 3.699 11 O -0.432 6.432 12 N -0.320 5.320 13 C 0.113 3.887 14 C -0.582 4.582 15 H 0.086 0.914 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.722 3.278 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.206 1.206 22 C 0.074 3.926 23 C -0.067 4.067 24 C -0.224 4.224 25 C -0.236 4.236 26 C -0.121 4.121 27 O -0.058 6.058 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.258 0.742 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.134 0.866 41 H 0.107 0.893 42 H 0.166 0.834 43 H 0.161 0.839 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.095 -1.156 9.314 9.617 hybrid contribution 0.561 -0.846 -0.682 1.223 sum -1.535 -2.002 8.632 8.993 Atomic orbital electron populations 1.21477 0.90481 1.05052 1.03233 1.30547 1.07276 1.26757 1.12112 1.05004 0.73003 0.77326 0.74382 1.93582 1.83265 1.73254 1.45281 1.93622 1.83293 1.71807 1.45100 1.55534 1.25458 1.77340 1.28194 1.20731 0.94642 0.95660 0.85988 0.87218 1.22274 1.02517 0.97575 1.00082 1.20537 0.85657 0.80420 0.83296 1.90625 1.58902 1.69143 1.24499 1.48302 1.25688 1.28357 1.29610 1.19606 0.91406 0.96652 0.80994 1.21470 1.18926 1.26695 0.91068 0.91421 1.24928 0.94634 0.94816 0.99133 1.69906 1.23648 1.33528 1.25335 0.86482 0.79202 0.79483 0.82633 1.19461 1.20858 1.20611 1.19749 0.87901 0.91489 0.93473 1.23209 1.04897 0.96636 0.81982 1.21669 1.07609 0.93580 0.99520 1.21789 1.08468 1.00505 0.92876 1.23982 1.05829 0.83278 0.98978 1.84133 1.67641 1.33914 1.20141 0.90808 0.89997 0.91230 0.84544 0.85008 0.74152 0.90548 0.92533 0.88115 0.94010 0.94491 0.92344 0.86644 0.89324 0.83366 0.83894 0.78746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.92 37.16 0.37 -1.12 16 2 C -0.64 -7.56 6.68 37.16 0.25 -7.31 16 3 S 2.61 38.08 5.38 -107.50 -0.58 37.50 16 4 O -0.96 -15.94 18.08 -57.54 -1.04 -16.98 16 5 O -0.95 -16.45 17.04 -57.54 -0.98 -17.43 16 6 N -1.10 -17.04 5.32 -5.88 -0.03 -17.07 16 7 C 0.14 2.43 2.52 -69.08 -0.17 2.25 16 8 H 0.11 1.88 4.84 -51.93 -0.25 1.63 16 9 C -0.17 -2.89 9.50 37.16 0.35 -2.53 16 10 C 0.51 9.78 6.83 -10.98 -0.07 9.70 16 11 O -0.55 -11.34 15.84 5.56 0.09 -11.25 16 12 N -0.59 -11.10 2.44 -176.43 -0.43 -11.53 16 13 C 0.23 4.87 4.95 -5.19 -0.03 4.85 16 14 C -0.54 -12.42 7.71 -34.44 -0.27 -12.69 16 15 H 0.07 1.55 7.57 -52.48 -0.40 1.16 16 16 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -22.44 13.29 55.43 0.74 -21.70 16 18 Si 0.89 19.10 29.54 -169.99 -5.02 14.08 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 C 0.20 3.35 5.88 -5.19 -0.03 3.32 16 23 C -0.02 -0.26 6.89 -35.62 -0.25 -0.50 16 24 C -0.20 -3.13 10.81 -39.70 -0.43 -3.56 16 25 C -0.22 -2.94 10.91 -39.70 -0.43 -3.37 16 26 C -0.05 -0.70 12.09 29.42 0.36 -0.35 16 27 O -0.16 -2.78 10.65 5.70 0.06 -2.72 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 31 H 0.14 1.62 7.44 -51.93 -0.39 1.23 16 32 H 0.13 1.38 8.14 -51.92 -0.42 0.95 16 33 H 0.42 6.35 8.10 -34.47 -0.28 6.07 16 34 H 0.08 1.30 7.35 -51.93 -0.38 0.92 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 1.89 6.07 -51.93 -0.32 1.58 16 37 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.04 0.79 5.81 -51.93 -0.30 0.49 16 39 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 40 H 0.12 1.80 8.05 -51.93 -0.42 1.38 16 41 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 42 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 43 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.20 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -31.02 383.12 -7.94 -38.96 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -6.06 Total: 12.11 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -0.45 Total: -9.75 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.27 Total: -50.31 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -1.87 Total: -48.37 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 38.08 SS G_CDS: -0.58 Total: 37.50 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.02 -7.94 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597025089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.173 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds