Wall clock time and date at job start Wed Apr 1 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81394 * 109.47302 * 2 1 4 4 O 1.42102 * 110.54221 * 68.37706 * 3 2 1 5 5 O 1.42108 * 110.54420 * 291.62720 * 3 2 1 6 6 N 1.65603 * 104.45208 * 180.02562 * 3 2 1 7 7 C 1.46496 * 119.99393 * 64.99975 * 6 3 2 8 8 H 1.09003 * 109.47840 * 335.00329 * 7 6 3 9 9 C 1.53007 * 109.47111 * 95.00431 * 7 6 3 10 10 C 1.50706 * 109.47007 * 215.00032 * 7 6 3 11 11 O 1.21282 * 119.99505 * 331.77202 * 10 7 6 12 12 N 1.34780 * 120.00170 * 151.49831 * 10 7 6 13 13 C 1.46501 * 119.99778 * 355.21889 * 12 10 7 14 14 C 1.50703 * 109.46812 * 91.86309 * 13 12 10 15 15 H 1.08003 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99837 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00278 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00050 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47064 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47411 * 120.00137 * 18 16 14 21 21 H 1.48501 * 109.47528 * 240.00283 * 18 16 14 22 22 C 1.46492 * 119.99928 * 175.22307 * 12 10 7 23 23 C 1.50708 * 109.47229 * 87.31007 * 22 12 10 24 24 C 1.34509 * 125.78476 * 95.42062 * 23 22 12 25 25 C 1.41386 * 106.83957 * 180.02562 * 24 23 22 26 26 C 1.34519 * 106.83884 * 359.97438 * 25 24 23 27 27 O 1.34302 * 125.78735 * 275.11477 * 23 22 12 28 28 H 1.09000 * 109.47169 * 59.99633 * 1 2 3 29 29 H 1.08998 * 109.47590 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46647 * 299.99986 * 1 2 3 31 31 H 1.08998 * 109.46714 * 239.99931 * 2 1 3 32 32 H 1.09000 * 109.47169 * 120.00367 * 2 1 3 33 33 H 0.96996 * 119.99803 * 244.99918 * 6 3 2 34 34 H 1.09000 * 109.46984 * 306.41149 * 9 7 6 35 35 H 1.08996 * 109.46969 * 66.41281 * 9 7 6 36 36 H 1.09002 * 109.46817 * 186.40990 * 9 7 6 37 37 H 1.08993 * 109.47361 * 211.86021 * 13 12 10 38 38 H 1.08998 * 109.47327 * 331.86514 * 13 12 10 39 39 H 0.96997 * 120.00234 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.47147 * 207.30932 * 22 12 10 41 41 H 1.09004 * 109.47366 * 327.31176 * 22 12 10 42 42 H 1.07999 * 126.58393 * 359.96671 * 24 23 22 43 43 H 1.07999 * 126.58429 * 179.97438 * 25 24 23 44 44 H 1.07997 * 125.79099 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3438 1.2370 5 8 1.8386 2.3439 -1.2370 6 7 3.7844 1.5652 -0.0007 7 6 4.4665 0.9672 -1.1510 8 1 3.7804 0.3013 -1.6746 9 6 4.9287 2.0734 -2.1017 10 6 5.6618 0.1829 -0.6741 11 8 6.2286 0.5037 0.3490 12 7 6.0976 -0.8782 -1.3817 13 6 5.3487 -1.3332 -2.5558 14 6 5.8901 -0.6579 -3.7895 15 1 6.7097 0.0406 -3.7072 16 6 5.3391 -0.9318 -5.0233 17 7 4.3407 -1.7820 -5.1235 18 14 6.0105 -0.0954 -6.5527 19 1 7.1248 0.8099 -6.1729 20 1 6.5089 -1.1238 -7.5010 21 1 4.9314 0.6932 -7.1999 22 6 7.3200 -1.5766 -0.9768 23 6 6.9796 -2.6383 0.0372 24 6 6.7562 -3.9376 -0.2293 25 6 6.4728 -4.5661 1.0051 26 6 6.5405 -3.6132 1.9521 27 8 6.8535 -2.4486 1.3608 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 4.2989 1.8763 0.7604 34 1 4.0818 2.7104 -2.3569 35 1 5.6997 2.6713 -1.6158 36 1 5.3337 1.6264 -3.0096 37 1 5.4534 -2.4133 -2.6574 38 1 4.2955 -1.0798 -2.4356 39 1 3.9533 -1.9750 -5.9916 40 1 7.7790 -2.0414 -1.8493 41 1 8.0169 -0.8635 -0.5362 42 1 6.7865 -4.4101 -1.2000 43 1 6.2455 -5.6107 1.1583 44 1 6.3758 -3.7605 3.0093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597025089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:45 Heat of formation + Delta-G solvation = -112.513197 kcal Electronic energy + Delta-G solvation = -29639.939143 eV Core-core repulsion = 25492.728576 eV Total energy + Delta-G solvation = -4147.210567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.42547 -41.05968 -38.25682 -37.15380 -37.04798 -36.47038 -34.62037 -34.08542 -33.83667 -32.05417 -30.58980 -29.13432 -27.28627 -25.07669 -25.00795 -24.42080 -22.57426 -21.57597 -20.49068 -20.34757 -19.17245 -18.71751 -18.04985 -17.96601 -17.56241 -17.33168 -17.04137 -16.62049 -16.38810 -16.08722 -15.69819 -15.19172 -15.14943 -14.69115 -14.41793 -14.22431 -14.00316 -13.84936 -13.66424 -13.57639 -13.45429 -13.40425 -13.32533 -13.24393 -13.14009 -13.00530 -12.73532 -12.71664 -12.59116 -12.45807 -12.37146 -12.00385 -11.73850 -11.65337 -10.96809 -10.79795 -10.55822 -10.45271 -9.68782 -9.37549 -8.16308 -6.27532 -0.80784 0.76002 1.43221 1.45562 1.51895 1.58542 1.66661 1.72535 2.20009 2.37022 2.47675 2.72439 3.15015 3.16670 3.49182 3.66316 3.73784 3.86293 3.89806 4.13213 4.19019 4.21753 4.27623 4.36332 4.42794 4.60584 4.68502 4.80065 4.82737 4.87926 4.95277 5.03055 5.05909 5.08554 5.22526 5.23099 5.36843 5.61224 5.67400 5.79156 5.93631 6.06972 6.28033 6.48175 6.83047 7.16497 7.43811 8.89959 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.006875 B = 0.005881 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4071.642248 B = 4759.613330 C = 7337.646398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.621 4.621 3 S 2.616 3.384 4 O -0.984 6.984 5 O -0.980 6.980 6 N -1.104 6.104 7 C 0.142 3.858 8 H 0.112 0.888 9 C -0.162 4.162 10 C 0.514 3.486 11 O -0.569 6.569 12 N -0.588 5.588 13 C 0.245 3.755 14 C -0.538 4.538 15 H 0.064 0.936 16 C 0.030 3.970 17 N -0.915 5.915 18 Si 0.944 3.056 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.196 3.804 23 C -0.043 4.043 24 C -0.205 4.205 25 C -0.223 4.223 26 C -0.047 4.047 27 O -0.188 6.188 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.151 0.849 33 H 0.424 0.576 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.267 0.733 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.152 0.848 43 H 0.171 0.829 44 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 -3.363 9.829 10.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.754 4.754 3 S 2.712 3.288 4 O -0.975 6.975 5 O -0.971 6.971 6 N -0.863 5.863 7 C 0.031 3.969 8 H 0.129 0.871 9 C -0.221 4.221 10 C 0.301 3.699 11 O -0.449 6.449 12 N -0.319 5.319 13 C 0.125 3.875 14 C -0.576 4.576 15 H 0.083 0.917 16 C -0.171 4.171 17 N -0.554 5.554 18 Si 0.770 3.230 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.210 1.210 22 C 0.073 3.927 23 C -0.094 4.094 24 C -0.225 4.225 25 C -0.242 4.242 26 C -0.114 4.114 27 O -0.084 6.084 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.157 0.843 32 H 0.169 0.831 33 H 0.260 0.740 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.076 0.924 40 H 0.141 0.859 41 H 0.103 0.897 42 H 0.170 0.830 43 H 0.189 0.811 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.372 -2.227 10.193 10.700 hybrid contribution 0.650 -0.585 -0.865 1.230 sum -1.722 -2.811 9.328 9.894 Atomic orbital electron populations 1.21678 0.89015 1.06674 1.04025 1.30400 1.08559 1.23192 1.13253 1.04768 0.72401 0.78438 0.73216 1.93551 1.83319 1.74782 1.45801 1.93578 1.83516 1.73789 1.46175 1.55445 1.25752 1.77442 1.27674 1.20643 0.94226 0.95493 0.86539 0.87094 1.22220 1.02723 0.97638 0.99560 1.20755 0.85849 0.80335 0.82993 1.90611 1.59590 1.69554 1.25162 1.48265 1.26082 1.28549 1.28960 1.19313 0.91357 0.95662 0.81150 1.21645 1.18287 1.25993 0.91714 0.91737 1.25486 0.94970 0.95398 1.01288 1.69978 1.24816 1.34879 1.25733 0.85712 0.78554 0.78597 0.80099 1.19093 1.20889 1.20963 1.19800 0.87052 0.91670 0.94158 1.23062 1.07246 0.96923 0.82177 1.21908 1.06652 0.93367 1.00613 1.22135 1.08240 1.01943 0.91873 1.24834 1.03842 0.82073 1.00684 1.84110 1.68336 1.35705 1.20271 0.90693 0.87891 0.90040 0.84307 0.83060 0.74008 0.90353 0.91915 0.89558 0.95128 0.94826 0.92425 0.85881 0.89661 0.82984 0.81109 0.74889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.92 71.98 0.71 -2.13 16 2 C -0.62 -13.58 6.68 71.98 0.48 -13.09 16 3 S 2.62 74.77 5.38 -56.49 -0.30 74.47 16 4 O -0.98 -31.95 18.08 -127.65 -2.31 -34.26 16 5 O -0.98 -33.96 17.04 -127.65 -2.17 -36.14 16 6 N -1.10 -33.67 5.32 -172.51 -0.92 -34.59 16 7 C 0.14 4.89 2.52 44.25 0.11 5.00 16 8 H 0.11 3.79 4.84 -2.39 -0.01 3.77 16 9 C -0.16 -5.67 9.50 71.98 0.68 -4.99 16 10 C 0.51 19.43 6.83 87.66 0.60 20.03 16 11 O -0.57 -23.24 15.84 -3.04 -0.05 -23.28 16 12 N -0.59 -22.14 2.44 -830.50 -2.03 -24.17 16 13 C 0.25 10.26 4.95 85.63 0.42 10.69 16 14 C -0.54 -24.51 7.71 25.60 0.20 -24.31 16 15 H 0.06 2.95 7.57 -2.91 -0.02 2.93 16 16 C 0.03 1.42 5.46 84.65 0.46 1.88 16 17 N -0.92 -46.21 13.29 21.45 0.28 -45.92 16 18 Si 0.94 38.94 29.54 68.60 2.03 40.97 16 19 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 C 0.20 6.66 5.88 85.64 0.50 7.16 16 23 C -0.04 -1.41 6.89 24.83 0.17 -1.24 16 24 C -0.21 -6.07 10.81 22.19 0.24 -5.83 16 25 C -0.22 -5.48 10.91 22.19 0.24 -5.23 16 26 C -0.05 -1.15 12.09 66.97 0.81 -0.34 16 27 O -0.19 -6.19 10.65 -2.53 -0.03 -6.21 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.14 3.07 7.44 -2.39 -0.02 3.05 16 32 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.42 12.66 8.10 -96.75 -0.78 11.88 16 34 H 0.08 2.68 7.35 -2.39 -0.02 2.66 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 3.25 6.07 -2.39 -0.01 3.24 16 37 H 0.03 1.36 8.09 -2.39 -0.02 1.34 16 38 H 0.03 1.45 5.81 -2.39 -0.01 1.43 16 39 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 40 H 0.12 3.86 8.05 -2.39 -0.02 3.84 16 41 H 0.09 2.90 7.58 -2.38 -0.02 2.88 16 42 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 44 H 0.23 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -65.08 383.12 0.39 -64.70 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.25 Total: 36.86 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 5.64 Total: -12.41 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -2.66 Total: -104.68 kcal Atomic # 8 Polarization: -95.34 SS G_CDS: -4.56 Total: -99.90 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 16 Polarization: 74.77 SS G_CDS: -0.30 Total: 74.47 kcal Total: -65.08 0.39 -64.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597025089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.816 kcal (2) G-P(sol) polarization free energy of solvation -65.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds