Wall clock time and date at job start Wed Apr 1 2020 02:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.46893 * 2 1 4 4 C 1.34728 * 116.99798 * 179.97438 * 3 2 1 5 5 O 1.21483 * 120.00276 * 0.02562 * 4 3 2 6 6 C 1.47615 * 119.99669 * 180.02562 * 4 3 2 7 7 C 1.41234 * 126.33675 * 179.97438 * 6 4 3 8 8 C 1.36685 * 105.43846 * 180.28164 * 7 6 4 9 9 C 1.47986 * 126.59023 * 179.71838 * 8 7 6 10 10 C 1.39511 * 120.07052 * 22.99197 * 9 8 7 11 11 C 1.37949 * 120.00322 * 179.71657 * 10 9 8 12 12 C 1.38710 * 120.20674 * 0.60948 * 11 10 9 13 13 C 1.39405 * 120.04770 * 359.65369 * 12 11 10 14 14 C 1.38292 * 119.96702 * 0.03495 * 13 12 11 15 15 O 1.36526 * 108.62045 * 180.02562 * 13 12 11 16 16 C 1.43982 * 105.48123 * 342.69276 * 15 13 12 17 17 O 1.36526 * 131.35823 * 179.69679 * 12 11 10 18 18 N 1.36380 * 106.82156 * 359.59842 * 8 7 6 19 19 C 1.46498 * 125.00814 * 180.16140 * 18 8 7 20 20 C 1.50701 * 109.46542 * 265.60596 * 19 18 8 21 21 H 1.07997 * 120.00569 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99647 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00065 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00222 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47223 * 59.99497 * 24 22 20 26 26 H 1.48495 * 109.47146 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46830 * 300.00164 * 24 22 20 28 28 N 1.28458 * 109.98507 * 0.42482 * 18 8 7 29 29 H 1.09003 * 109.46842 * 59.99929 * 1 2 3 30 30 H 1.09002 * 109.46738 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47099 * 299.99772 * 1 2 3 32 32 H 1.08998 * 109.47478 * 240.00611 * 2 1 3 33 33 H 1.09001 * 109.47238 * 119.99719 * 2 1 3 34 34 H 1.08003 * 127.28387 * 0.03240 * 7 6 4 35 35 H 1.07996 * 119.99652 * 0.02562 * 10 9 8 36 36 H 1.07998 * 119.89524 * 180.23516 * 11 10 9 37 37 H 1.07994 * 120.04483 * 180.02562 * 14 13 12 38 38 H 1.08996 * 110.56346 * 268.61728 * 16 15 13 39 39 H 1.09003 * 110.56900 * 145.75108 * 16 15 13 40 40 H 1.08995 * 109.46958 * 25.60109 * 19 18 8 41 41 H 1.08995 * 109.47242 * 145.60972 * 19 18 8 42 42 H 0.97000 * 120.00401 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5456 0.0005 5 8 4.0897 0.5822 0.0005 6 6 3.9138 2.9097 0.0011 7 6 5.2849 3.2482 0.0022 8 6 5.3224 4.6145 0.0089 9 6 6.5343 5.4637 0.0184 10 6 7.7467 4.9569 -0.4501 11 6 8.8742 5.7517 -0.4460 12 6 8.8103 7.0513 0.0347 13 6 7.6029 7.5614 0.5092 14 6 6.4682 6.7708 0.5013 15 8 7.8045 8.8476 0.9203 16 6 9.2297 8.9831 1.0735 17 8 9.7666 8.0189 0.1490 18 7 4.0282 5.0448 0.0024 19 6 3.6093 6.4486 0.0029 20 6 3.3533 6.8959 1.4190 21 1 3.4894 6.2038 2.2369 22 6 2.9452 8.1887 1.6705 23 7 2.7799 9.0316 0.6747 24 14 2.6285 8.7434 3.4259 25 1 3.8730 8.5985 4.2230 26 1 2.2038 10.1663 3.4264 27 1 1.5575 7.9063 4.0240 28 7 3.2307 4.0378 0.0013 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 6.1261 2.5708 0.0023 35 1 7.8013 3.9440 -0.8206 36 1 9.8110 5.3588 -0.8127 37 1 5.5321 7.1649 0.8683 38 1 9.5296 8.7437 2.0937 39 1 9.5497 9.9900 0.8055 40 1 4.3960 7.0627 -0.4354 41 1 2.6962 6.5555 -0.5826 42 1 2.4932 9.9412 0.8516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601931921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:54 Heat of formation + Delta-G solvation = -43.491116 kcal Electronic energy + Delta-G solvation = -29469.890706 eV Core-core repulsion = 25190.229210 eV Total energy + Delta-G solvation = -4279.661496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16530 -41.84605 -39.86694 -37.67255 -36.33023 -36.10066 -34.16006 -32.21181 -31.75949 -31.52309 -30.20161 -28.36069 -27.90280 -25.64171 -24.83194 -23.43017 -22.89176 -22.68931 -21.95673 -20.50697 -19.75401 -18.09409 -17.68934 -17.11985 -17.00380 -16.82983 -16.62533 -16.36660 -15.62770 -15.58230 -14.92490 -14.47073 -14.37883 -13.98846 -13.84438 -13.73393 -13.52064 -13.30813 -13.08389 -12.81516 -12.76366 -12.73458 -12.44244 -12.08631 -11.89541 -11.85256 -11.54895 -11.24118 -10.99977 -10.97093 -10.59888 -10.52039 -10.41255 -10.38124 -10.19645 -10.02568 -9.19442 -8.81565 -8.51147 -8.37176 -7.58461 -6.44803 -4.55087 1.01728 1.45317 1.79590 2.64611 2.73762 2.93157 3.15903 3.20327 3.22567 3.38139 3.57815 3.58121 3.92623 4.17190 4.64950 4.70886 4.74436 4.84373 4.92178 4.94356 4.99760 5.01561 5.18261 5.26348 5.27882 5.36906 5.45680 5.70962 5.77525 5.77713 5.83309 5.97231 6.00934 6.22393 6.31151 6.41425 6.52547 6.56536 6.61062 6.71613 6.82728 6.87821 7.30664 7.36039 7.53905 7.59725 7.99533 8.47602 8.63477 9.13106 10.62635 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.009138 B = 0.003873 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.343037 B = 7228.153152 C = 9864.513542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.342 6.342 4 C 0.566 3.434 5 O -0.515 6.515 6 C -0.045 4.045 7 C -0.165 4.165 8 C 0.047 3.953 9 C -0.005 4.005 10 C -0.091 4.091 11 C -0.105 4.105 12 C 0.026 3.974 13 C 0.038 3.962 14 C -0.093 4.093 15 O -0.301 6.301 16 C 0.212 3.788 17 O -0.313 6.313 18 N -0.223 5.223 19 C 0.233 3.767 20 C -0.551 4.551 21 H 0.070 0.930 22 C 0.074 3.926 23 N -0.880 5.880 24 Si 0.907 3.093 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.272 1.272 28 N -0.210 5.210 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.182 0.818 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.403 -7.324 -1.462 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.258 6.258 4 C 0.410 3.590 5 O -0.402 6.402 6 C -0.197 4.197 7 C -0.193 4.193 8 C -0.076 4.076 9 C -0.007 4.007 10 C -0.110 4.110 11 C -0.123 4.123 12 C -0.019 4.019 13 C -0.007 4.007 14 C -0.111 4.111 15 O -0.217 6.217 16 C 0.099 3.901 17 O -0.229 6.229 18 N -0.014 5.014 19 C 0.116 3.884 20 C -0.589 4.589 21 H 0.088 0.912 22 C -0.132 4.132 23 N -0.515 5.515 24 Si 0.733 3.267 25 H -0.197 1.197 26 H -0.207 1.207 27 H -0.197 1.197 28 N -0.051 5.051 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.199 0.801 38 H 0.098 0.902 39 H 0.145 0.855 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.442 -6.714 -1.583 9.438 hybrid contribution 0.699 0.256 1.054 1.290 sum 7.141 -6.457 -0.529 9.642 Atomic orbital electron populations 1.21795 0.92715 1.02572 1.03851 1.23011 0.95380 0.80468 1.02371 1.86691 1.23591 1.31580 1.83894 1.19613 0.80280 0.87358 0.71755 1.90798 1.60685 1.41268 1.47488 1.20360 0.91789 0.90179 1.17384 1.21412 0.95692 0.92821 1.09328 1.19630 0.85825 0.92359 1.09812 1.17476 0.90854 0.91936 1.00423 1.20848 0.90314 1.00051 0.99836 1.19817 0.99734 0.89131 1.03652 1.19966 0.87098 0.91483 1.03303 1.19610 0.94973 0.84245 1.01823 1.21274 0.99448 0.91452 0.98969 1.87456 1.24153 1.25655 1.84429 1.25585 0.76191 0.94617 0.93663 1.87308 1.40267 1.32405 1.62965 1.46876 1.02062 1.08688 1.43768 1.20396 0.98874 0.68737 1.00348 1.21114 1.49386 0.97472 0.90885 0.91196 1.24909 0.93963 0.95859 0.98431 1.69892 1.44106 1.06116 1.31421 0.86379 0.79236 0.77796 0.83256 1.19668 1.20721 1.19682 1.73679 1.22678 0.93706 1.15047 0.91382 0.90475 0.91326 0.91338 0.91325 0.82256 0.84100 0.84678 0.80114 0.90188 0.85466 0.91296 0.91809 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.29 37.16 0.38 -1.09 16 2 C 0.06 0.77 6.20 37.16 0.23 1.00 16 3 O -0.34 -5.79 10.23 -40.57 -0.41 -6.20 16 4 C 0.57 10.41 7.97 34.56 0.28 10.69 16 5 O -0.52 -9.65 16.71 -19.25 -0.32 -9.97 16 6 C -0.04 -0.89 7.14 -82.88 -0.59 -1.48 16 7 C -0.16 -2.95 10.17 -39.01 -0.40 -3.34 16 8 C 0.05 0.90 6.70 -82.41 -0.55 0.35 16 9 C -0.01 -0.09 5.80 -104.96 -0.61 -0.70 16 10 C -0.09 -1.27 9.56 -39.21 -0.38 -1.65 16 11 C -0.10 -1.40 10.04 -39.51 -0.40 -1.80 16 12 C 0.03 0.41 7.15 -38.97 -0.28 0.13 16 13 C 0.04 0.67 7.14 -39.13 -0.28 0.40 16 14 C -0.09 -1.79 8.40 -39.09 -0.33 -2.12 16 15 O -0.30 -5.21 11.40 -45.77 -0.52 -5.74 16 16 C 0.21 2.61 8.89 101.05 0.90 3.51 16 17 O -0.31 -4.49 11.40 -45.77 -0.52 -5.01 16 18 N -0.22 -4.86 3.32 -58.55 -0.19 -5.05 16 19 C 0.23 5.48 5.22 -5.19 -0.03 5.45 16 20 C -0.55 -13.93 7.71 -34.44 -0.27 -14.20 16 21 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 23 N -0.88 -23.19 13.29 55.43 0.74 -22.45 16 24 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 N -0.21 -4.61 11.97 33.36 0.40 -4.21 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.16 2.37 7.84 -52.48 -0.41 1.96 16 35 H 0.14 1.57 7.55 -52.49 -0.40 1.18 16 36 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.18 4.02 4.01 -52.49 -0.21 3.81 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.63 5.78 -51.93 -0.30 1.32 16 41 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -29.79 367.50 -7.40 -37.19 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.67 Total: 3.87 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.41 Total: -3.06 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.94 Total: -31.71 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.78 Total: -26.92 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.79 -7.40 -37.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601931921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.296 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds