Wall clock time and date at job start Wed Apr 1 2020 03:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99649 * 2 1 4 4 H 1.48499 * 109.46865 * 270.00050 * 3 2 1 5 5 H 1.48501 * 109.46936 * 29.99852 * 3 2 1 6 6 H 1.48495 * 109.46791 * 150.00040 * 3 2 1 7 7 C 1.37872 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00233 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00312 * 270.00148 * 10 9 7 12 12 O 1.21290 * 120.00018 * 184.76712 * 11 10 9 13 13 C 1.50698 * 119.99735 * 4.76546 * 11 10 9 14 14 N 1.46501 * 109.47142 * 179.97438 * 13 11 10 15 15 C 1.34425 * 126.82152 * 125.00014 * 14 13 11 16 16 N 1.30842 * 108.07408 * 179.97438 * 15 14 13 17 17 C 1.33234 * 109.82613 * 0.02562 * 16 15 14 18 18 N 1.30712 * 108.95125 * 359.75410 * 17 16 15 19 19 C 1.40100 * 120.00130 * 90.00483 * 10 9 7 20 20 C 1.38850 * 120.02211 * 248.36689 * 19 10 9 21 21 C 1.38123 * 120.03698 * 180.32489 * 20 19 10 22 22 C 1.38716 * 120.16297 * 359.44019 * 21 20 19 23 23 C 1.38991 * 119.93159 * 0.20817 * 22 21 20 24 24 C 1.38649 * 119.88568 * 0.10757 * 23 22 21 25 25 O 1.36121 * 120.77965 * 180.20495 * 23 22 21 26 26 C 1.43167 * 116.71369 * 342.70921 * 25 23 22 27 27 C 1.53476 * 108.22738 * 46.28095 * 26 25 23 28 28 O 1.36199 * 119.31496 * 180.02562 * 22 21 20 29 29 H 0.96998 * 120.00412 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46730 * 60.00130 * 9 7 2 31 31 H 1.08997 * 109.47254 * 300.00402 * 9 7 2 32 32 H 1.08992 * 109.47392 * 300.00246 * 13 11 10 33 33 H 1.09003 * 109.46820 * 60.00452 * 13 11 10 34 34 H 1.07994 * 125.96313 * 0.02562 * 15 14 13 35 35 H 1.08002 * 125.52325 * 179.97438 * 17 16 15 36 36 H 1.08000 * 119.97773 * 0.05786 * 20 19 10 37 37 H 1.07997 * 119.91759 * 179.72195 * 21 20 19 38 38 H 1.08000 * 119.98751 * 179.90568 * 24 23 22 39 39 H 1.08996 * 109.71447 * 286.59628 * 26 25 23 40 40 H 1.09000 * 109.71387 * 165.95801 * 26 25 23 41 41 H 1.09003 * 109.70678 * 180.54099 * 27 26 25 42 42 H 1.08994 * 109.74228 * 59.93683 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0027 11 6 2.6412 -4.1258 -1.1641 12 8 3.3611 -5.1020 -1.1649 13 6 2.2365 -3.4868 -2.4675 14 7 2.8383 -4.2248 -3.5808 15 6 2.1952 -4.7661 -4.6297 16 7 3.0848 -5.3369 -5.4009 17 6 4.3010 -5.1820 -4.8792 18 7 4.2023 -4.5030 -3.7666 19 6 2.6584 -4.1440 1.2165 20 6 3.9829 -3.9731 1.5964 21 6 4.4336 -4.5026 2.7898 22 6 3.5630 -5.1962 3.6176 23 6 2.2348 -5.3626 3.2434 24 6 1.7844 -4.8365 2.0423 25 8 1.3647 -6.0366 4.0443 26 6 1.9366 -6.8701 5.0581 27 6 3.0425 -6.0752 5.7657 28 8 4.0258 -5.7107 4.7907 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5574 -0.8881 31 1 0.6248 -2.5563 0.8919 32 1 1.1508 -3.5087 -2.5612 33 1 2.5822 -2.4533 -2.4881 34 1 1.1301 -4.7346 -4.8057 35 1 5.2198 -5.5538 -5.3081 36 1 4.6621 -3.4295 0.9564 37 1 5.4653 -4.3725 3.0813 38 1 0.7530 -4.9662 1.7492 39 1 2.3610 -7.7646 4.6024 40 1 1.1687 -7.1525 5.7783 41 1 3.5019 -6.6921 6.5380 42 1 2.6198 -5.1770 6.2159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609154330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:17 Heat of formation + Delta-G solvation = 30.344473 kcal Electronic energy + Delta-G solvation = -29861.476198 eV Core-core repulsion = 25617.309205 eV Total energy + Delta-G solvation = -4244.166993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79927 -41.13086 -39.69314 -37.31787 -37.14185 -35.02703 -33.69342 -32.75453 -30.96997 -30.91192 -30.25047 -28.59402 -27.69552 -26.82904 -24.63267 -23.36628 -22.72206 -21.98216 -21.71127 -20.98313 -19.30354 -18.38104 -17.40100 -17.26890 -17.00126 -16.64754 -16.38001 -15.73651 -15.33231 -15.25902 -14.94499 -14.76895 -14.48490 -14.36776 -14.32981 -13.94190 -13.70971 -13.66365 -13.25179 -13.01667 -12.62560 -12.42674 -12.21769 -11.82520 -11.70242 -11.53157 -11.18117 -11.10272 -10.98668 -10.86945 -10.46712 -10.32213 -10.00097 -9.89805 -9.79056 -9.50697 -9.17106 -8.72786 -8.55422 -8.24101 -7.58876 -6.34866 -4.43750 1.47971 1.57118 1.90046 2.46650 2.96065 3.04273 3.14406 3.19677 3.22093 3.22935 3.27537 3.66207 3.94289 4.20249 4.21205 4.50865 4.72103 4.74111 4.76929 4.80343 4.95993 5.01799 5.09294 5.13873 5.34980 5.46808 5.50152 5.54024 5.61317 5.65472 5.97143 6.07581 6.32073 6.41877 6.48573 6.64974 6.69382 6.81534 6.92426 6.97861 6.98900 7.33189 7.55453 7.60157 7.81673 7.92331 8.31136 8.54894 8.69850 9.25632 10.71758 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.007606 B = 0.004268 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3680.248962 B = 6558.659835 C = 9158.903635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.070 3.930 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.235 3.765 10 N -0.555 5.555 11 C 0.511 3.489 12 O -0.528 6.528 13 C 0.115 3.885 14 N -0.360 5.360 15 C 0.250 3.750 16 N -0.552 5.552 17 C 0.181 3.819 18 N -0.288 5.288 19 C 0.181 3.819 20 C -0.097 4.097 21 C -0.103 4.103 22 C 0.037 3.963 23 C 0.057 3.943 24 C -0.115 4.115 25 O -0.307 6.307 26 C 0.022 3.978 27 C 0.021 3.979 28 O -0.310 6.310 29 H 0.268 0.732 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.217 0.783 35 H 0.212 0.788 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 -9.450 4.398 10.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.117 3.883 10 N -0.284 5.284 11 C 0.298 3.702 12 O -0.404 6.404 13 C -0.010 4.010 14 N -0.151 5.151 15 C -0.047 4.047 16 N -0.280 5.280 17 C -0.121 4.121 18 N -0.115 5.115 19 C 0.090 3.910 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.007 4.007 23 C 0.012 3.988 24 C -0.135 4.135 25 O -0.222 6.222 26 C -0.054 4.054 27 C -0.055 4.055 28 O -0.225 6.225 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.234 0.766 35 H 0.229 0.771 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.271 -9.782 4.636 11.061 hybrid contribution -0.061 1.119 0.437 1.203 sum 2.210 -8.663 5.073 10.280 Atomic orbital electron populations 1.69902 1.06018 1.27690 1.48928 1.24913 0.94855 0.99353 0.94310 0.86496 0.79970 0.82688 0.78437 1.20326 1.20947 1.19628 1.21429 0.93788 0.90065 1.53106 0.91709 1.19677 0.87129 0.82156 0.99346 1.45842 1.45781 1.34822 1.01980 1.20294 0.80883 0.83876 0.85154 1.90744 1.36726 1.25852 1.87090 1.21749 0.99630 0.97229 0.82363 1.50122 1.05121 1.41241 1.18580 1.26000 1.00444 0.93131 0.85111 1.70478 0.99838 1.25848 1.31819 1.25917 0.97034 0.97943 0.91249 1.78174 0.94005 1.20513 1.18789 1.17053 0.91947 0.94960 0.87080 1.21030 0.95558 0.99368 0.95682 1.20203 0.99556 0.98331 0.94169 1.18785 0.92507 1.01233 0.88212 1.18505 0.88621 0.99155 0.92522 1.20367 1.01208 1.00070 0.91853 1.86302 1.32659 1.58631 1.44623 1.23577 0.98032 0.92949 0.90864 1.23574 0.90678 1.00452 0.90786 1.86301 1.33775 1.78623 1.23771 0.92254 0.94050 0.93696 0.85104 0.84690 0.76645 0.77131 0.85017 0.84775 0.84679 0.90727 0.86372 0.86465 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.69 13.29 55.43 0.74 -21.96 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.55 -12.97 9.16 -34.44 -0.32 -13.29 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.24 5.01 4.88 -5.20 -0.03 4.99 16 10 N -0.56 -10.97 2.51 -114.72 -0.29 -11.26 16 11 C 0.51 9.92 7.57 -10.98 -0.08 9.83 16 12 O -0.53 -11.72 15.53 5.55 0.09 -11.64 16 13 C 0.12 1.86 5.70 -5.19 -0.03 1.83 16 14 N -0.36 -5.91 3.40 -63.82 -0.22 -6.13 16 15 C 0.25 3.48 12.63 -90.65 -1.14 2.33 16 16 N -0.55 -8.54 11.19 -15.83 -0.18 -8.72 16 17 C 0.18 2.81 13.03 -91.82 -1.20 1.62 16 18 N -0.29 -5.22 11.83 29.29 0.35 -4.88 16 19 C 0.18 3.54 4.74 -83.66 -0.40 3.14 16 20 C -0.10 -1.79 9.57 -39.40 -0.38 -2.17 16 21 C -0.10 -1.71 9.95 -39.45 -0.39 -2.11 16 22 C 0.04 0.61 6.49 -39.13 -0.25 0.36 16 23 C 0.06 0.97 6.49 -39.15 -0.25 0.72 16 24 C -0.11 -2.10 9.61 -39.24 -0.38 -2.48 16 25 O -0.31 -4.60 10.42 -32.91 -0.34 -4.94 16 26 C 0.02 0.22 7.26 37.40 0.27 0.49 16 27 C 0.02 0.21 7.26 37.40 0.27 0.48 16 28 O -0.31 -4.42 10.42 -33.16 -0.35 -4.76 16 29 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.04 0.85 6.48 -51.93 -0.34 0.51 16 31 H 0.04 1.04 7.87 -51.93 -0.41 0.63 16 32 H 0.13 1.68 7.20 -51.93 -0.37 1.31 16 33 H 0.14 2.25 7.91 -51.93 -0.41 1.84 16 34 H 0.22 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.21 2.42 8.06 -52.49 -0.42 2.00 16 36 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 37 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.14 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -32.91 367.66 -8.96 -41.87 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.88 Total: 5.02 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -4.40 Total: 7.36 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.40 Total: -52.94 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.60 Total: -21.35 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.91 -8.96 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609154330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.213 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds