Wall clock time and date at job start Wed Apr 1 2020 03:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99649 * 2 1 4 4 H 1.48499 * 109.46865 * 270.00050 * 3 2 1 5 5 H 1.48501 * 109.46936 * 29.99852 * 3 2 1 6 6 H 1.48495 * 109.46791 * 150.00040 * 3 2 1 7 7 C 1.37872 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00233 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00312 * 270.00148 * 10 9 7 12 12 O 1.21290 * 120.00018 * 184.76712 * 11 10 9 13 13 C 1.50698 * 119.99735 * 4.76546 * 11 10 9 14 14 N 1.46501 * 109.47142 * 179.97438 * 13 11 10 15 15 C 1.34425 * 126.82152 * 125.00014 * 14 13 11 16 16 N 1.30842 * 108.07408 * 179.97438 * 15 14 13 17 17 C 1.33234 * 109.82613 * 0.02562 * 16 15 14 18 18 N 1.30712 * 108.95125 * 359.75410 * 17 16 15 19 19 C 1.40100 * 120.00130 * 90.00483 * 10 9 7 20 20 C 1.38850 * 120.02211 * 248.36689 * 19 10 9 21 21 C 1.38123 * 120.03698 * 180.32489 * 20 19 10 22 22 C 1.38716 * 120.16297 * 359.44019 * 21 20 19 23 23 C 1.38991 * 119.93159 * 0.20817 * 22 21 20 24 24 C 1.38649 * 119.88568 * 0.10757 * 23 22 21 25 25 O 1.36121 * 120.77965 * 180.20495 * 23 22 21 26 26 C 1.43167 * 116.71369 * 342.70921 * 25 23 22 27 27 C 1.53476 * 108.22738 * 46.28095 * 26 25 23 28 28 O 1.36199 * 119.31496 * 180.02562 * 22 21 20 29 29 H 0.96998 * 120.00412 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46730 * 60.00130 * 9 7 2 31 31 H 1.08997 * 109.47254 * 300.00402 * 9 7 2 32 32 H 1.08992 * 109.47392 * 300.00246 * 13 11 10 33 33 H 1.09003 * 109.46820 * 60.00452 * 13 11 10 34 34 H 1.07994 * 125.96313 * 0.02562 * 15 14 13 35 35 H 1.08002 * 125.52325 * 179.97438 * 17 16 15 36 36 H 1.08000 * 119.97773 * 0.05786 * 20 19 10 37 37 H 1.07997 * 119.91759 * 179.72195 * 21 20 19 38 38 H 1.08000 * 119.98751 * 179.90568 * 24 23 22 39 39 H 1.08996 * 109.71447 * 286.59628 * 26 25 23 40 40 H 1.09000 * 109.71387 * 165.95801 * 26 25 23 41 41 H 1.09003 * 109.70678 * 180.54099 * 27 26 25 42 42 H 1.08994 * 109.74228 * 59.93683 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0027 11 6 2.6412 -4.1258 -1.1641 12 8 3.3611 -5.1020 -1.1649 13 6 2.2365 -3.4868 -2.4675 14 7 2.8383 -4.2248 -3.5808 15 6 2.1952 -4.7661 -4.6297 16 7 3.0848 -5.3369 -5.4009 17 6 4.3010 -5.1820 -4.8792 18 7 4.2023 -4.5030 -3.7666 19 6 2.6584 -4.1440 1.2165 20 6 3.9829 -3.9731 1.5964 21 6 4.4336 -4.5026 2.7898 22 6 3.5630 -5.1962 3.6176 23 6 2.2348 -5.3626 3.2434 24 6 1.7844 -4.8365 2.0423 25 8 1.3647 -6.0366 4.0443 26 6 1.9366 -6.8701 5.0581 27 6 3.0425 -6.0752 5.7657 28 8 4.0258 -5.7107 4.7907 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5574 -0.8881 31 1 0.6248 -2.5563 0.8919 32 1 1.1508 -3.5087 -2.5612 33 1 2.5822 -2.4533 -2.4881 34 1 1.1301 -4.7346 -4.8057 35 1 5.2198 -5.5538 -5.3081 36 1 4.6621 -3.4295 0.9564 37 1 5.4653 -4.3725 3.0813 38 1 0.7530 -4.9662 1.7492 39 1 2.3610 -7.7646 4.6024 40 1 1.1687 -7.1525 5.7783 41 1 3.5019 -6.6921 6.5380 42 1 2.6198 -5.1770 6.2159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609154330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:16 Heat of formation + Delta-G solvation = 11.871939 kcal Electronic energy + Delta-G solvation = -29862.277227 eV Core-core repulsion = 25617.309205 eV Total energy + Delta-G solvation = -4244.968023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.98213 -42.30574 -41.13643 -38.66775 -38.25789 -36.60238 -34.94633 -34.55557 -32.14001 -32.03656 -31.56892 -29.81914 -29.28371 -28.22437 -25.71456 -25.09006 -24.04329 -23.25667 -22.85203 -22.16299 -20.59440 -19.58383 -18.81752 -18.71081 -18.19548 -18.06473 -17.87100 -17.05660 -16.67121 -16.42921 -16.41502 -15.99323 -15.79565 -15.68428 -15.40918 -15.06413 -14.95328 -14.91181 -14.55617 -14.36218 -14.25982 -13.73879 -13.62320 -13.38927 -13.07573 -12.88282 -12.76070 -12.65673 -12.23627 -12.10759 -12.00482 -11.79730 -11.49761 -11.31699 -10.99000 -10.73292 -10.63468 -10.50655 -10.05174 -9.62810 -8.96115 -8.22582 -6.36044 0.12015 0.21868 0.73958 1.27949 1.41109 1.44138 1.47916 1.54275 1.89578 2.05962 2.08925 2.36245 2.42589 2.59043 3.09349 3.26616 3.43079 3.54636 3.63766 3.70699 3.95782 4.01847 4.05560 4.12023 4.16363 4.29264 4.33873 4.44365 4.45383 4.57876 4.64729 4.75434 4.96058 5.01170 5.07951 5.25552 5.29656 5.42611 5.54210 5.66872 5.79904 5.84318 5.93280 5.99741 6.33855 6.37021 6.73258 7.09547 7.16421 7.36170 8.82776 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.007606 B = 0.004268 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3680.248962 B = 6558.659835 C = 9158.903635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.033 3.967 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.249 3.751 10 N -0.553 5.553 11 C 0.508 3.492 12 O -0.560 6.560 13 C 0.123 3.877 14 N -0.374 5.374 15 C 0.261 3.739 16 N -0.570 5.570 17 C 0.185 3.815 18 N -0.339 5.339 19 C 0.152 3.848 20 C -0.114 4.114 21 C -0.103 4.103 22 C 0.040 3.960 23 C 0.058 3.942 24 C -0.130 4.130 25 O -0.322 6.322 26 C 0.013 3.987 27 C 0.013 3.987 28 O -0.317 6.317 29 H 0.269 0.731 30 H 0.054 0.946 31 H 0.024 0.976 32 H 0.166 0.834 33 H 0.127 0.873 34 H 0.264 0.736 35 H 0.241 0.759 36 H 0.122 0.878 37 H 0.157 0.843 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -10.159 5.168 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.168 4.168 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.202 1.202 7 C -0.586 4.586 8 H 0.071 0.929 9 C 0.130 3.870 10 N -0.282 5.282 11 C 0.297 3.703 12 O -0.438 6.438 13 C -0.002 4.002 14 N -0.164 5.164 15 C -0.034 4.034 16 N -0.298 5.298 17 C -0.118 4.118 18 N -0.167 5.167 19 C 0.061 3.939 20 C -0.134 4.134 21 C -0.122 4.122 22 C -0.005 4.005 23 C 0.012 3.988 24 C -0.150 4.150 25 O -0.237 6.237 26 C -0.062 4.062 27 C -0.061 4.061 28 O -0.232 6.232 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.183 0.817 33 H 0.145 0.855 34 H 0.279 0.721 35 H 0.257 0.743 36 H 0.140 0.860 37 H 0.174 0.826 38 H 0.153 0.847 39 H 0.098 0.902 40 H 0.176 0.824 41 H 0.178 0.822 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.937 -10.499 5.421 11.973 hybrid contribution 0.039 1.197 0.341 1.245 sum 1.976 -9.302 5.761 11.119 Atomic orbital electron populations 1.69964 1.06874 1.28294 1.49954 1.25461 0.95439 1.01676 0.94254 0.85716 0.78583 0.79848 0.78538 1.19597 1.20842 1.20238 1.21571 0.93321 0.91269 1.52447 0.92929 1.19393 0.86962 0.81831 0.98780 1.45781 1.45479 1.34338 1.02572 1.20845 0.80137 0.83408 0.85938 1.90713 1.38142 1.27382 1.87566 1.21734 1.01429 0.96222 0.80785 1.50127 1.04930 1.42157 1.19203 1.26988 1.02117 0.90823 0.83517 1.70541 1.00111 1.26727 1.32428 1.26559 0.98239 0.96587 0.90385 1.78118 0.95549 1.22522 1.20476 1.17330 0.92726 0.96334 0.87529 1.21042 0.95255 1.00436 0.96670 1.20422 1.00716 0.97697 0.93403 1.18835 0.92084 1.00521 0.89043 1.18541 0.89115 0.98806 0.92315 1.20426 1.01090 1.00752 0.92704 1.86281 1.33120 1.58930 1.45325 1.24031 0.99494 0.92229 0.90417 1.24007 0.90371 1.01315 0.90412 1.86293 1.35385 1.78148 1.23387 0.92149 0.92785 0.95744 0.81682 0.85516 0.72068 0.74296 0.86041 0.82577 0.84740 0.90174 0.82448 0.82234 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.55 13.29 21.45 0.28 -46.27 16 2 C 0.03 1.63 5.46 84.65 0.46 2.09 16 3 Si 0.95 39.97 29.54 68.60 2.03 42.00 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.55 -26.41 9.16 25.60 0.23 -26.17 16 8 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 9 C 0.25 10.82 4.88 85.63 0.42 11.24 16 10 N -0.55 -22.52 2.51 -635.26 -1.59 -24.11 16 11 C 0.51 20.15 7.57 87.66 0.66 20.81 16 12 O -0.56 -25.58 15.53 -3.06 -0.05 -25.63 16 13 C 0.12 3.93 5.70 85.63 0.49 4.42 16 14 N -0.37 -12.04 3.40 -355.81 -1.21 -13.25 16 15 C 0.26 6.79 12.63 180.36 2.28 9.06 16 16 N -0.57 -16.83 11.19 -204.01 -2.28 -19.11 16 17 C 0.18 5.61 13.03 180.77 2.36 7.97 16 18 N -0.34 -12.39 11.83 -61.25 -0.72 -13.11 16 19 C 0.15 6.16 4.74 38.09 0.18 6.34 16 20 C -0.11 -4.40 9.57 22.39 0.21 -4.19 16 21 C -0.10 -3.44 9.95 22.36 0.22 -3.22 16 22 C 0.04 1.30 6.49 22.56 0.15 1.45 16 23 C 0.06 1.96 6.49 22.55 0.15 2.11 16 24 C -0.13 -4.88 9.61 22.49 0.22 -4.66 16 25 O -0.32 -9.24 10.42 -82.70 -0.86 -10.10 16 26 C 0.01 0.22 7.26 72.14 0.52 0.75 16 27 C 0.01 0.23 7.26 72.14 0.52 0.75 16 28 O -0.32 -8.41 10.42 -83.59 -0.87 -9.28 16 29 H 0.27 13.14 8.31 -92.71 -0.77 12.36 16 30 H 0.05 2.20 6.48 -2.39 -0.02 2.18 16 31 H 0.02 1.16 7.87 -2.39 -0.02 1.14 16 32 H 0.17 3.98 7.20 -2.39 -0.02 3.96 16 33 H 0.13 4.27 7.91 -2.39 -0.02 4.25 16 34 H 0.26 3.78 8.06 -2.91 -0.02 3.76 16 35 H 0.24 5.27 8.06 -2.91 -0.02 5.25 16 36 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 37 H 0.16 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.16 1.49 8.14 -2.39 -0.02 1.48 16 41 H 0.16 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -72.72 367.66 4.86 -67.86 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 1.06 Total: 22.26 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 9.07 Total: 28.76 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -5.53 Total: -115.86 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.78 Total: -45.01 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -72.72 4.86 -67.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609154330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.731 kcal (2) G-P(sol) polarization free energy of solvation -72.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds