Wall clock time and date at job start Wed Apr 1 2020 03:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21279 * 120.00331 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00011 * 0.02562 * 13 12 11 16 16 C 1.52999 * 109.47017 * 179.97438 * 15 13 12 17 17 N 1.46501 * 109.47078 * 179.97438 * 16 15 13 18 18 N 1.39736 * 119.95754 * 270.00121 * 17 16 15 19 19 N 1.28360 * 122.94759 * 179.97438 * 18 17 16 20 20 C 1.35633 * 121.97249 * 0.02562 * 19 18 17 21 21 C 1.39731 * 121.34158 * 180.02562 * 20 19 18 22 22 C 1.37636 * 119.73817 * 179.97438 * 21 20 19 23 23 C 1.38881 * 120.81314 * 0.02562 * 22 21 20 24 24 C 1.37751 * 120.53253 * 0.02571 * 23 22 21 25 25 C 1.39381 * 119.56553 * 359.94811 * 24 23 22 26 26 C 1.35396 * 119.95589 * 89.72690 * 17 16 15 27 27 O 1.21739 * 121.31783 * 359.97438 * 26 17 16 28 28 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 29 29 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 30 30 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 31 31 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 32 32 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 33 33 H 1.08992 * 109.46728 * 299.99633 * 15 13 12 34 34 H 1.08994 * 109.46926 * 59.99489 * 15 13 12 35 35 H 1.09002 * 109.47467 * 300.00294 * 16 15 13 36 36 H 1.09004 * 109.46732 * 60.00018 * 16 15 13 37 37 H 1.07994 * 120.13291 * 0.02562 * 21 20 19 38 38 H 1.08004 * 119.59073 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.73004 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.21717 * 180.02562 * 24 23 22 41 41 H 1.09003 * 113.76727 * 221.05145 * 28 12 11 42 42 H 1.09000 * 113.86995 * 89.67487 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2133 -6.5461 0.2150 15 6 -0.7362 -5.8951 1.3748 16 6 -0.9866 -7.4037 1.4236 17 7 -2.2431 -7.6676 2.1291 18 7 -2.2392 -7.8593 3.5132 19 7 -3.3054 -8.0934 4.1886 20 6 -4.5251 -8.1727 3.6007 21 6 -5.6774 -8.4277 4.3488 22 6 -6.8986 -8.5008 3.7181 23 6 -7.0015 -8.3246 2.3444 24 6 -5.8799 -8.0732 1.5851 25 6 -4.6337 -7.9947 2.2043 26 6 -3.4074 -7.7198 1.4399 27 8 -3.4375 -7.5507 0.2347 28 6 2.1608 -3.7358 -0.1538 29 1 -0.4850 -0.8357 0.0860 30 1 -0.0835 -1.7161 -1.5945 31 1 0.8051 -2.6872 1.8427 32 1 -0.6172 -2.9282 0.7358 33 1 -0.6722 -5.5041 2.3901 34 1 -1.5571 -5.4077 0.8488 35 1 -1.0507 -7.7945 0.4080 36 1 -0.1657 -7.8914 1.9494 37 1 -5.6102 -8.5660 5.4177 38 1 -7.7876 -8.6984 4.2987 39 1 -7.9685 -8.3860 1.8675 40 1 -5.9659 -7.9366 0.5172 41 1 2.4415 -4.1971 -1.1007 42 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614708024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:04 Heat of formation + Delta-G solvation = 13.852307 kcal Electronic energy + Delta-G solvation = -29039.461294 eV Core-core repulsion = 24794.579147 eV Total energy + Delta-G solvation = -4244.882147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68320 -39.82990 -39.03328 -38.10603 -37.73883 -35.12570 -34.33255 -32.42045 -32.26247 -31.54055 -31.03733 -28.66079 -26.22413 -25.66050 -25.53780 -24.75417 -23.22631 -22.65735 -20.36884 -20.00066 -19.24142 -18.56685 -18.03755 -17.36901 -16.63830 -16.43946 -15.90292 -15.72008 -15.58816 -15.43811 -15.08420 -14.76545 -14.51858 -14.26836 -14.06912 -13.93220 -13.43303 -13.35445 -13.19646 -12.75961 -12.68636 -12.55376 -12.38164 -12.24638 -12.12215 -11.64249 -11.39308 -11.17191 -10.95475 -10.93453 -10.59497 -10.51148 -10.41070 -10.24188 -9.78363 -9.63305 -9.37660 -8.90378 -8.85618 -8.47643 -7.96697 -6.72078 -4.51652 -0.47172 0.20934 1.42752 1.55839 2.15391 2.98295 3.23207 3.24155 3.28661 3.32280 3.37207 3.50880 3.53871 4.05789 4.23974 4.29777 4.55271 4.60011 4.67590 4.72930 4.79118 4.82893 4.91595 5.18499 5.27856 5.30953 5.38418 5.42193 5.47341 5.61763 5.64575 5.72438 5.82139 5.90899 5.99990 6.10089 6.12197 6.28046 6.34317 6.41462 6.73478 7.19044 7.61483 7.86083 8.05693 8.24895 8.40455 8.52089 8.80221 9.18850 10.59357 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.002334 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.450509 B =11996.135911 C =12664.166259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.037 3.963 3 Si 1.067 2.933 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.617 4.617 8 H 0.066 0.934 9 C 0.216 3.784 10 O -0.566 6.566 11 C 0.068 3.932 12 N -0.631 5.631 13 C 0.538 3.462 14 O -0.562 6.562 15 C -0.151 4.151 16 C 0.140 3.860 17 N -0.453 5.453 18 N 0.091 4.909 19 N -0.207 5.207 20 C 0.061 3.939 21 C -0.071 4.071 22 C -0.085 4.085 23 C -0.104 4.104 24 C -0.051 4.051 25 C -0.150 4.150 26 C 0.524 3.476 27 O -0.494 6.494 28 C 0.124 3.876 29 H 0.268 0.732 30 H 0.375 0.625 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.073 0.927 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.141 -14.944 9.662 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.169 4.169 3 Si 0.893 3.107 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.655 4.655 8 H 0.084 0.916 9 C 0.175 3.825 10 O -0.373 6.373 11 C -0.055 4.055 12 N -0.364 5.364 13 C 0.327 3.673 14 O -0.442 6.442 15 C -0.192 4.192 16 C 0.019 3.981 17 N -0.278 5.278 18 N 0.106 4.894 19 N -0.098 5.098 20 C -0.048 4.048 21 C -0.094 4.094 22 C -0.104 4.104 23 C -0.124 4.124 24 C -0.070 4.070 25 C -0.161 4.161 26 C 0.314 3.686 27 O -0.365 6.365 28 C 0.002 3.998 29 H 0.079 0.921 30 H 0.224 0.776 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.091 0.909 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.912 -14.433 9.357 21.508 hybrid contribution -1.027 -1.065 -0.505 1.563 sum -13.939 -15.498 8.852 22.646 Atomic orbital electron populations 1.70953 1.07005 1.30665 1.44737 1.25997 0.96206 1.03080 0.91643 0.83578 0.75161 0.74919 0.76994 1.20560 1.21075 1.20969 1.22220 0.97842 0.91962 1.53467 0.91591 1.20141 0.88330 0.93006 0.81024 1.86258 1.57050 1.56302 1.37664 1.24522 0.99743 0.78827 1.02393 1.50153 1.25849 1.04445 1.55978 1.19723 0.86375 0.81525 0.79717 1.90661 1.58740 1.42854 1.51957 1.21878 0.97738 0.96770 1.02821 1.21591 0.82224 0.95808 0.98500 1.51261 1.10031 1.60983 1.05540 1.80278 1.18434 1.01881 0.88848 1.73945 0.96203 1.12675 1.26980 1.19655 0.92996 1.01212 0.90954 1.21039 0.89853 0.97671 1.00845 1.21418 0.97750 0.96464 0.94811 1.21444 0.98965 0.98029 0.94007 1.21166 0.90002 0.94488 1.01360 1.20618 0.95410 1.06619 0.93414 1.18777 0.83699 0.78193 0.87940 1.90935 1.85193 1.47818 1.12550 1.23312 0.89424 0.90262 0.96759 0.92061 0.77587 0.89302 0.91712 0.88355 0.88639 0.86993 0.87120 0.83276 0.83987 0.84088 0.83538 0.90876 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.53 12.80 55.43 0.71 -22.82 16 2 C 0.04 0.93 5.26 -17.82 -0.09 0.83 16 3 Si 1.07 22.65 29.93 -169.99 -5.09 17.56 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.62 -15.52 8.56 -34.44 -0.29 -15.81 16 8 H 0.07 1.64 7.85 -52.49 -0.41 1.23 16 9 C 0.22 5.07 1.08 -90.84 -0.10 4.97 16 10 O -0.57 -13.99 13.45 -35.23 -0.47 -14.46 16 11 C 0.07 1.42 7.05 -2.97 -0.02 1.40 16 12 N -0.63 -12.98 3.61 -178.27 -0.64 -13.62 16 13 C 0.54 10.45 8.06 -10.98 -0.09 10.36 16 14 O -0.56 -12.16 16.71 5.56 0.09 -12.07 16 15 C -0.15 -2.34 5.77 -27.88 -0.16 -2.50 16 16 C 0.14 1.98 5.02 -4.04 -0.02 1.96 16 17 N -0.45 -6.18 3.52 -61.31 -0.22 -6.40 16 18 N 0.09 1.17 12.77 60.35 0.77 1.94 16 19 N -0.21 -2.42 11.61 32.27 0.37 -2.05 16 20 C 0.06 0.64 6.72 -84.51 -0.57 0.07 16 21 C -0.07 -0.49 10.02 -39.24 -0.39 -0.88 16 22 C -0.09 -0.43 10.00 -39.56 -0.40 -0.82 16 23 C -0.10 -0.60 10.02 -39.52 -0.40 -1.00 16 24 C -0.05 -0.45 9.67 -39.33 -0.38 -0.83 16 25 C -0.15 -1.74 5.90 -104.76 -0.62 -2.36 16 26 C 0.52 7.49 7.75 -12.39 -0.10 7.40 16 27 O -0.49 -8.28 16.34 5.15 0.08 -8.20 16 28 C 0.12 2.67 8.22 -2.97 -0.02 2.65 16 29 H 0.27 6.82 5.52 -40.82 -0.23 6.60 16 30 H 0.38 9.07 6.95 45.56 0.32 9.39 16 31 H 0.09 1.81 8.09 -51.93 -0.42 1.39 16 32 H 0.06 1.31 7.80 -51.92 -0.41 0.91 16 33 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.11 1.70 7.45 -51.93 -0.39 1.32 16 36 H 0.11 1.43 8.10 -51.93 -0.42 1.01 16 37 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.14 0.25 8.06 -52.48 -0.42 -0.17 16 39 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.15 1.25 7.81 -52.48 -0.41 0.84 16 41 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -31.61 367.44 -6.62 -38.23 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.12 Total: 10.92 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.65 Total: 5.43 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 1.00 Total: -42.95 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.30 Total: -34.73 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.09 Total: 17.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.61 -6.62 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614708024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.081 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds