Wall clock time and date at job start Wed Apr 1 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42904 * 109.47352 * 2 1 4 4 C 1.35667 * 117.00258 * 179.97438 * 3 2 1 5 5 C 1.39126 * 119.86477 * 359.72617 * 4 3 2 6 6 C 1.36589 * 120.13544 * 179.71902 * 5 4 3 7 7 C 1.40255 * 119.86195 * 0.53426 * 6 5 4 8 8 C 1.46410 * 120.13620 * 179.76528 * 7 6 5 9 9 C 1.37876 * 119.99896 * 29.57099 * 8 7 6 10 10 C 1.43199 * 119.99794 * 6.79697 * 9 8 7 11 11 N 6.16637 * 160.31906 * 247.07661 * 2 1 3 12 12 C 1.46967 * 119.99960 * 186.80187 * 9 8 7 13 13 O 1.21567 * 119.99956 * 359.97438 * 12 9 8 14 14 O 1.34828 * 119.99637 * 180.02562 * 12 9 8 15 15 C 1.45204 * 116.99332 * 179.97438 * 14 12 9 16 16 C 1.50701 * 109.46625 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00463 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00040 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00451 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99786 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00441 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99498 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00124 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47102 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46946 * 120.00168 * 23 21 19 26 26 H 1.48493 * 109.47352 * 240.00033 * 23 21 19 27 27 C 1.40264 * 119.73021 * 359.73920 * 7 6 5 28 28 C 1.36586 * 119.86172 * 0.02562 * 27 7 6 29 29 H 1.09003 * 109.47237 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47474 * 299.99864 * 1 2 3 31 31 H 1.09003 * 109.46951 * 60.00307 * 1 2 3 32 32 H 1.09003 * 109.46951 * 119.99693 * 2 1 3 33 33 H 1.08998 * 109.47570 * 239.99632 * 2 1 3 34 34 H 1.07996 * 119.92718 * 359.97438 * 5 4 3 35 35 H 1.07998 * 120.06755 * 180.29911 * 6 5 4 36 36 H 1.07997 * 120.00056 * 209.57161 * 8 7 6 37 37 H 1.08998 * 109.47370 * 299.99475 * 15 14 12 38 38 H 1.08999 * 109.47438 * 60.00027 * 15 14 12 39 39 H 0.97004 * 119.99928 * 359.97438 * 18 16 15 40 40 H 0.97003 * 119.99808 * 179.97438 * 22 21 19 41 41 H 1.08007 * 120.06616 * 180.02562 * 27 7 6 42 42 H 1.08001 * 119.93114 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 0.0005 5 6 4.1962 0.4197 0.0068 6 6 5.5511 0.5923 0.0016 7 6 6.0902 1.8871 0.0012 8 6 7.5417 2.0790 0.0008 9 6 8.3611 1.1396 -0.5884 10 6 7.7899 0.0529 -1.3256 11 7 7.3361 -0.8089 -1.9127 12 6 9.8207 1.2536 -0.4599 13 8 10.3056 2.1764 0.1656 14 8 10.6219 0.3353 -1.0367 15 6 12.0535 0.5114 -0.8689 16 6 12.7826 -0.6019 -1.5761 17 8 12.1574 -1.4590 -2.1639 18 7 14.1296 -0.6446 -1.5561 19 6 14.7930 -1.6570 -2.1998 20 1 14.2362 -2.4207 -2.7226 21 6 16.1817 -1.7008 -2.1797 22 7 16.8591 -0.7713 -1.5441 23 14 17.0855 -3.0807 -3.0562 24 1 16.1004 -3.9923 -3.6917 25 1 17.9729 -2.5068 -4.0995 26 1 17.9016 -3.8396 -2.0749 27 6 5.2332 2.9974 0.0007 28 6 3.8800 2.8120 0.0010 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 3.7798 -0.5767 0.0117 35 1 6.2060 -0.2665 0.0016 36 1 7.9706 2.9563 0.4621 37 1 12.3539 1.4696 -1.2928 38 1 12.3003 0.4901 0.1925 39 1 14.6297 0.0415 -1.0869 40 1 17.8285 -0.8019 -1.5297 41 1 5.6425 3.9969 0.0000 42 1 3.2190 3.6661 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731239692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:14 Heat of formation + Delta-G solvation = -101.376013 kcal Electronic energy + Delta-G solvation = -27353.128613 eV Core-core repulsion = 23070.957039 eV Total energy + Delta-G solvation = -4282.171573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.71400 -41.32114 -40.08557 -39.28040 -37.71992 -37.54904 -36.04635 -34.84646 -33.42559 -32.81853 -32.23729 -30.80555 -29.69984 -26.79123 -25.75719 -25.08699 -23.48800 -22.52595 -22.35506 -21.44326 -20.08484 -20.00524 -19.37825 -18.06778 -17.73055 -17.70228 -17.27238 -17.17385 -16.81612 -16.44198 -16.12038 -15.82938 -15.78557 -15.46314 -14.92671 -14.91251 -14.71251 -14.42356 -14.33547 -14.09617 -13.87614 -13.63757 -13.61408 -13.57626 -13.39395 -13.17275 -12.95326 -12.86081 -12.67656 -12.47679 -12.13042 -11.91891 -11.89253 -11.86055 -11.72281 -11.59480 -10.89328 -10.52667 -10.22620 -10.11792 -9.08741 -8.53201 -6.03484 -1.01099 0.29698 0.52193 1.21614 1.22299 1.33679 1.42292 1.55770 1.66961 1.86789 2.09807 2.28548 2.29622 2.67683 2.77336 3.01542 3.12403 3.44418 3.57452 3.72646 3.84735 3.97996 3.99464 4.07166 4.13980 4.20508 4.20829 4.25056 4.30663 4.46580 4.58366 4.69409 4.82639 4.87606 4.89547 5.10665 5.16810 5.22996 5.25218 5.34462 5.36610 5.59538 5.88595 6.25200 6.31491 6.46098 6.58730 7.03054 7.39663 7.94693 8.63921 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.026657 B = 0.001676 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.135175 B =16701.627978 C =17620.697090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.320 6.320 4 C 0.156 3.844 5 C -0.226 4.226 6 C -0.055 4.055 7 C -0.169 4.169 8 C 0.144 3.856 9 C -0.148 4.148 10 C 0.273 3.727 11 N -0.455 5.455 12 C 0.524 3.476 13 O -0.509 6.509 14 O -0.350 6.350 15 C 0.074 3.926 16 C 0.432 3.568 17 O -0.624 6.624 18 N -0.555 5.555 19 C -0.340 4.340 20 H 0.080 0.920 21 C -0.005 4.005 22 N -0.912 5.912 23 Si 0.996 3.004 24 H -0.276 1.276 25 H -0.268 1.268 26 H -0.268 1.268 27 C -0.013 4.013 28 C -0.166 4.166 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.205 0.795 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.402 0.598 40 H 0.281 0.719 41 H 0.184 0.816 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.127 12.284 8.773 32.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.233 6.233 4 C 0.110 3.890 5 C -0.244 4.244 6 C -0.074 4.074 7 C -0.169 4.169 8 C 0.122 3.878 9 C -0.153 4.153 10 C -0.040 4.040 11 N -0.132 5.132 12 C 0.370 3.630 13 O -0.399 6.399 14 O -0.265 6.265 15 C -0.003 4.003 16 C 0.219 3.781 17 O -0.511 6.511 18 N -0.193 5.193 19 C -0.469 4.469 20 H 0.098 0.902 21 C -0.206 4.206 22 N -0.552 5.552 23 Si 0.819 3.181 24 H -0.200 1.200 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.031 4.031 28 C -0.184 4.184 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.133 0.867 36 H 0.221 0.779 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.237 0.763 40 H 0.091 0.909 41 H 0.201 0.799 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -29.990 10.794 7.677 32.785 hybrid contribution 1.363 -0.776 -0.089 1.571 sum -28.627 10.018 7.587 31.264 Atomic orbital electron populations 1.21806 0.91078 1.04200 1.03536 1.23121 0.97249 0.80588 1.02279 1.86034 1.18696 1.31367 1.87198 1.19683 0.82622 0.94728 0.92003 1.21070 0.93979 0.99303 1.10096 1.21328 0.95383 0.97024 0.93659 1.18993 0.92237 0.94030 1.11635 1.23551 0.90448 0.93139 0.80631 1.17124 0.88514 0.97935 1.11694 1.25552 0.92668 0.92927 0.92881 1.81293 1.10185 1.10612 1.11090 1.20597 0.87345 0.79251 0.75797 1.90868 1.76293 1.32689 1.40079 1.86661 1.19256 1.50892 1.69720 1.22601 0.76385 0.98515 1.02814 1.20260 0.83086 0.88693 0.86048 1.90549 1.67488 1.43379 1.49710 1.41706 1.04159 1.25919 1.47504 1.19722 0.90044 1.05712 1.31437 0.90233 1.26068 0.96484 1.00529 0.97561 1.69667 1.08905 1.34533 1.42055 0.84830 0.77742 0.77400 0.78096 1.20026 1.19276 1.19271 1.21390 0.91393 0.99410 0.90867 1.20548 0.96087 0.94976 1.06787 0.88537 0.91282 0.91642 0.90906 0.91629 0.84476 0.86724 0.77867 0.86559 0.86634 0.76330 0.90898 0.79866 0.82168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 71.98 0.74 -0.24 16 2 C 0.04 0.43 5.45 71.98 0.39 0.82 16 3 O -0.32 -4.62 10.12 -89.83 -0.91 -5.53 16 4 C 0.16 2.33 6.70 22.70 0.15 2.48 16 5 C -0.23 -3.79 8.97 22.10 0.20 -3.59 16 6 C -0.06 -1.03 8.26 22.37 0.18 -0.85 16 7 C -0.17 -2.37 5.59 -20.17 -0.11 -2.48 16 8 C 0.14 2.00 9.46 24.31 0.23 2.23 16 9 C -0.15 -3.48 5.84 -19.83 -0.12 -3.60 16 10 C 0.27 8.22 11.27 88.32 1.00 9.21 16 11 N -0.45 -15.91 17.92 19.02 0.34 -15.57 16 12 C 0.52 15.40 7.87 70.11 0.55 15.95 16 13 O -0.51 -14.48 16.09 19.62 0.32 -14.16 16 14 O -0.35 -13.34 9.30 -51.01 -0.47 -13.82 16 15 C 0.07 2.74 5.96 71.24 0.42 3.17 16 16 C 0.43 21.64 7.86 87.66 0.69 22.33 16 17 O -0.62 -37.34 16.08 15.75 0.25 -37.09 16 18 N -0.56 -28.78 5.29 -306.98 -1.62 -30.40 16 19 C -0.34 -19.47 9.68 84.04 0.81 -18.65 16 20 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 21 C -0.01 -0.28 5.50 84.93 0.47 0.18 16 22 N -0.91 -48.31 13.05 21.66 0.28 -48.03 16 23 Si 1.00 42.73 29.55 68.60 2.03 44.75 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 C -0.01 -0.11 9.75 22.38 0.22 0.11 16 28 C -0.17 -1.77 9.92 22.10 0.22 -1.55 16 29 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.63 7.63 -2.39 -0.02 0.61 16 33 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 34 H 0.14 2.05 6.27 -2.91 -0.02 2.03 16 35 H 0.11 2.58 5.35 -2.91 -0.02 2.56 16 36 H 0.20 1.37 7.61 -2.91 -0.02 1.34 16 37 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 38 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 40 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 41 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 42 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -79.45 381.79 6.62 -72.83 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.36 Total: 21.50 kcal Atomic # 6 Polarization: 19.47 SS G_CDS: 6.05 Total: 25.52 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -1.00 Total: -94.00 kcal Atomic # 8 Polarization: -69.78 SS G_CDS: -0.81 Total: -70.60 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -79.45 6.62 -72.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.551 kcal (2) G-P(sol) polarization free energy of solvation -79.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds