Wall clock time and date at job start Wed Apr 1 2020 02:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33609 * 1 3 3 C 1.47608 * 126.11035 * 2 1 4 4 C 1.38938 * 133.93778 * 359.93189 * 3 2 1 5 5 C 1.38115 * 119.75116 * 180.02562 * 4 3 2 6 6 C 1.38600 * 120.49011 * 0.04156 * 5 4 3 7 7 C 1.37987 * 120.56446 * 359.95766 * 6 5 4 8 8 C 1.39292 * 119.76898 * 0.02562 * 7 6 5 9 9 C 1.47128 * 133.63929 * 179.97438 * 8 7 6 10 10 O 1.21646 * 125.44267 * 0.02562 * 9 8 7 11 11 N 1.34507 * 109.11311 * 179.78465 * 9 8 7 12 12 C 1.46497 * 124.94003 * 180.22578 * 11 9 8 13 13 H 1.09006 * 109.47225 * 180.18529 * 12 11 9 14 14 C 1.53002 * 109.47222 * 60.18826 * 12 11 9 15 15 C 1.50702 * 109.47408 * 300.18847 * 12 11 9 16 16 O 1.20824 * 119.99757 * 359.97438 * 15 12 11 17 17 O 1.34231 * 119.99783 * 180.02562 * 15 12 11 18 18 C 1.45198 * 116.99730 * 179.97438 * 17 15 12 19 19 C 1.50703 * 109.47421 * 180.02562 * 18 17 15 20 20 O 1.21293 * 119.99456 * 359.97438 * 19 18 17 21 21 N 1.34768 * 120.00241 * 180.02562 * 19 18 17 22 22 C 1.37102 * 120.00087 * 179.97438 * 21 19 18 23 23 H 1.07996 * 119.99831 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99934 * 179.97438 * 22 21 19 25 25 N 1.31417 * 120.00015 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00185 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47152 * 90.00300 * 26 24 22 28 28 H 1.48510 * 109.47127 * 209.99973 * 26 24 22 29 29 H 1.48498 * 109.47331 * 329.99979 * 26 24 22 30 30 H 1.08002 * 120.00523 * 0.03611 * 1 2 3 31 31 H 1.08005 * 119.99708 * 179.75282 * 1 2 3 32 32 H 1.07993 * 120.12479 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.75329 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.71339 * 179.97438 * 6 5 4 35 35 H 1.07991 * 120.11449 * 179.97438 * 7 6 5 36 36 H 1.09006 * 109.47235 * 300.00252 * 14 12 11 37 37 H 1.09004 * 109.47187 * 59.99488 * 14 12 11 38 38 H 1.08998 * 109.47651 * 179.97438 * 14 12 11 39 39 H 1.09003 * 109.47266 * 299.99898 * 18 17 15 40 40 H 1.09003 * 109.47650 * 59.99544 * 18 17 15 41 41 H 0.97000 * 119.99964 * 359.97438 * 21 19 18 42 42 H 0.96999 * 120.00255 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3361 0.0000 0.0000 3 6 2.2060 1.1925 0.0000 4 6 1.9659 2.5610 -0.0012 5 6 3.0285 3.4433 -0.0013 6 6 4.3325 2.9736 -0.0011 7 6 4.5901 1.6180 0.0000 8 6 3.5313 0.7129 0.0005 9 6 3.4514 -0.7562 0.0013 10 8 4.4027 -1.5144 0.0020 11 7 2.1585 -1.1270 0.0063 12 6 1.6830 -2.5126 0.0132 13 1 0.5930 -2.5228 0.0129 14 6 2.1992 -3.2227 1.2663 15 6 2.1924 -3.2247 -1.2134 16 8 2.8814 -2.6351 -2.0117 17 8 1.8796 -4.5137 -1.4195 18 6 2.4045 -5.1352 -2.6222 19 6 1.9525 -6.5715 -2.6839 20 8 1.2567 -7.0267 -1.8007 21 7 2.3221 -7.3504 -3.7197 22 6 1.9112 -8.6572 -3.7755 23 1 1.2917 -9.0625 -2.9892 24 6 2.2918 -9.4601 -4.8438 25 7 1.8976 -10.7126 -4.8976 26 14 3.3627 -8.7588 -6.2042 27 1 4.7935 -8.9630 -5.8629 28 1 3.0552 -9.4498 -7.4822 29 1 3.0909 -7.3061 -6.3491 30 1 -0.5401 0.9353 -0.0006 31 1 -0.5400 -0.9354 -0.0040 32 1 0.9522 2.9334 -0.0028 33 1 2.8419 4.5070 -0.0018 34 1 5.1540 3.6747 -0.0017 35 1 5.6089 1.2601 -0.0002 36 1 3.2892 -3.2126 1.2668 37 1 1.8308 -2.7077 2.1536 38 1 1.8451 -4.2536 1.2718 39 1 2.0360 -4.6008 -3.4978 40 1 3.4938 -5.0971 -2.6052 41 1 2.8788 -6.9864 -4.4258 42 1 2.1630 -11.2730 -5.6435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731241032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:26 Heat of formation + Delta-G solvation = -71.159209 kcal Electronic energy + Delta-G solvation = -29044.138273 eV Core-core repulsion = 24763.276998 eV Total energy + Delta-G solvation = -4280.861274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.08285 -40.38140 -38.66927 -38.20800 -37.11767 -36.18036 -34.08294 -33.95564 -32.07124 -31.80000 -30.46136 -30.21752 -28.59338 -25.57260 -24.61460 -23.97716 -23.39361 -21.97420 -20.96824 -19.67267 -19.41884 -18.59777 -18.13253 -17.25246 -17.13406 -16.64178 -16.45685 -15.97564 -15.79221 -15.35009 -14.98871 -14.86490 -14.73033 -14.37914 -14.30237 -14.08168 -13.71835 -13.24035 -13.04878 -12.96792 -12.91513 -12.61915 -12.51224 -12.30680 -12.22953 -12.15445 -11.89854 -11.77310 -11.55618 -11.26079 -10.64794 -10.54859 -10.51267 -10.20404 -10.05053 -9.67621 -9.56926 -9.42222 -8.67751 -8.44491 -8.29336 -6.39266 -3.92149 -0.00727 0.67461 1.83543 1.93530 2.14133 2.57460 2.92322 2.99446 3.04471 3.12696 3.39226 3.55041 3.64747 3.92229 4.04063 4.26460 4.34039 4.47422 4.52120 4.59882 4.78186 4.80871 4.89924 5.01338 5.11173 5.12970 5.31448 5.32672 5.42492 5.44912 5.50594 5.54288 5.57814 5.67089 5.75352 5.85046 5.89573 5.93319 6.30312 6.34455 6.44115 6.66943 7.44139 7.62794 7.76986 8.00525 8.47529 8.83370 9.29780 9.65026 10.72911 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.002218 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.354754 B =12621.770694 C =13132.019677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.136 3.864 3 C -0.046 4.046 4 C -0.091 4.091 5 C -0.090 4.090 6 C -0.122 4.122 7 C -0.042 4.042 8 C -0.152 4.152 9 C 0.571 3.429 10 O -0.484 6.484 11 N -0.551 5.551 12 C 0.167 3.833 13 H 0.136 0.864 14 C -0.164 4.164 15 C 0.448 3.552 16 O -0.493 6.493 17 O -0.319 6.319 18 C 0.059 3.941 19 C 0.449 3.551 20 O -0.557 6.557 21 N -0.579 5.579 22 C -0.308 4.308 23 H 0.123 0.877 24 C 0.045 3.955 25 N -0.874 5.874 26 Si 0.879 3.121 27 H -0.268 1.268 28 H -0.274 1.274 29 H -0.268 1.268 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.373 0.627 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.221 30.789 10.509 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.042 3.958 3 C -0.048 4.048 4 C -0.109 4.109 5 C -0.108 4.108 6 C -0.140 4.140 7 C -0.061 4.061 8 C -0.156 4.156 9 C 0.361 3.639 10 O -0.357 6.357 11 N -0.276 5.276 12 C 0.063 3.937 13 H 0.154 0.846 14 C -0.222 4.222 15 C 0.288 3.712 16 O -0.380 6.380 17 O -0.233 6.233 18 C -0.019 4.019 19 C 0.234 3.766 20 O -0.439 6.439 21 N -0.219 5.219 22 C -0.436 4.436 23 H 0.140 0.860 24 C -0.159 4.159 25 N -0.514 5.514 26 Si 0.705 3.295 27 H -0.194 1.194 28 H -0.199 1.199 29 H -0.194 1.194 30 H 0.149 0.851 31 H 0.135 0.865 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.206 0.794 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.537 29.812 10.728 31.688 hybrid contribution 0.883 0.370 -1.550 1.822 sum 1.420 30.183 9.178 31.579 Atomic orbital electron populations 1.23848 0.91544 1.04165 1.03915 1.18455 0.91288 0.83828 1.02245 1.19419 0.92909 0.92827 0.99617 1.20585 1.00063 0.90124 1.00150 1.21299 0.92235 1.00017 0.97248 1.21235 0.97378 0.94934 1.00477 1.20792 0.98571 0.91977 0.94775 1.20528 0.94878 0.93883 1.06268 1.18069 0.82151 0.88091 0.75556 1.90835 1.39074 1.59336 1.46447 1.45445 1.06839 1.04395 1.70904 1.20501 1.01520 0.78814 0.92846 0.84617 1.22175 1.03834 1.01980 0.94209 1.23688 0.78555 0.81514 0.87447 1.90691 1.34721 1.67074 1.45465 1.86513 1.68856 1.24318 1.43600 1.22786 0.99790 0.93844 0.85476 1.19141 0.86466 0.85970 0.85048 1.90598 1.40333 1.74248 1.38696 1.42033 1.47225 1.11777 1.20859 1.19421 1.30989 0.83530 1.09652 0.85965 1.25037 0.97711 0.95386 0.97756 1.69614 1.44182 1.05725 1.31841 0.86685 0.81335 0.79168 0.82357 1.19373 1.19917 1.19380 0.85104 0.86452 0.84777 0.84704 0.84708 0.84671 0.90348 0.90436 0.88426 0.89444 0.89301 0.79378 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.30 14.31 29.11 0.42 -0.88 16 2 C 0.14 1.32 6.73 -82.16 -0.55 0.77 16 3 C -0.05 -0.44 6.28 -104.79 -0.66 -1.09 16 4 C -0.09 -0.58 10.09 -39.37 -0.40 -0.98 16 5 C -0.09 -0.48 10.03 -39.49 -0.40 -0.88 16 6 C -0.12 -0.76 10.02 -39.54 -0.40 -1.16 16 7 C -0.04 -0.39 10.09 -39.28 -0.40 -0.78 16 8 C -0.15 -1.77 6.36 -104.87 -0.67 -2.43 16 9 C 0.57 8.34 6.67 -12.77 -0.09 8.26 16 10 O -0.48 -8.61 15.62 -8.88 -0.14 -8.74 16 11 N -0.55 -6.89 2.44 -107.74 -0.26 -7.15 16 12 C 0.17 2.05 3.30 -69.08 -0.23 1.83 16 13 H 0.14 1.23 6.49 -51.93 -0.34 0.89 16 14 C -0.16 -1.85 9.14 37.16 0.34 -1.51 16 15 C 0.45 7.37 6.99 36.01 0.25 7.62 16 16 O -0.49 -9.32 14.66 -23.97 -0.35 -9.67 16 17 O -0.32 -5.84 9.66 -45.90 -0.44 -6.28 16 18 C 0.06 1.10 5.94 36.01 0.21 1.32 16 19 C 0.45 10.55 7.86 -10.99 -0.09 10.46 16 20 O -0.56 -15.29 16.08 -14.11 -0.23 -15.51 16 21 N -0.58 -13.97 5.09 -10.97 -0.06 -14.03 16 22 C -0.31 -8.67 10.16 -14.93 -0.15 -8.83 16 23 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 24 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 25 N -0.87 -25.25 13.96 55.50 0.77 -24.48 16 26 Si 0.88 19.34 27.73 -169.99 -4.71 14.63 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 28 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 29 H -0.27 -5.42 6.52 56.52 0.37 -5.06 16 30 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 31 H 0.12 0.69 6.70 -52.48 -0.35 0.34 16 32 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 33 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 34 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.08 1.05 6.88 -51.93 -0.36 0.69 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 1.09 8.11 -51.93 -0.42 0.67 16 39 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 40 H 0.09 1.54 8.13 -51.93 -0.42 1.12 16 41 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 42 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -37.48 369.80 -7.38 -44.86 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.64 Total: 7.96 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: -2.89 Total: 12.85 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.46 Total: -45.66 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.16 Total: -40.21 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.48 -7.38 -44.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.299 kcal (2) G-P(sol) polarization free energy of solvation -37.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds